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Conserved domains on  [gi|1937425670|ref|WP_195961227|]
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carbohydrate ABC transporter permease [Enterococcus casseliflavus]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 39-311 3.60e-65

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 206.10  E-value: 3.60e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670  39 CAYPFYYIFINTISDNQLSAMGEVLFIPKDIHFQNYKQILEIPNITNAFIISVARTVIGTTLTVLCSGFLGFMMTQQKMT 118
Cdd:COG0395    28 FLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFR 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 119 GRKFVYRFIISTMYVS--AGTIPVYMLFNYLGLLDNFLVYVIPGMV--SAYNIVLVKTYIESsIPSSLQESAEMDGAGII 194
Cdd:COG0395   108 GRKLLFLLILATLMIPgqVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRS-IPRELEEAARIDGASEF 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 195 TMFFKIALPLMVPILATLAIFSAVGQWNSFMDTVIYVTREDLHTLQYVLYRYLTQStalaneinsgnisidqvaataQTA 274
Cdd:COG0395   187 RIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQY---------------------GTD 245

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1937425670 275 QSVKLTVTMMVVLPIFAIYPFFQRFFVKGITIGAVKG 311
Cdd:COG0395   246 WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 39-311 3.60e-65

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 206.10  E-value: 3.60e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670  39 CAYPFYYIFINTISDNQLSAMGEVLFIPKDIHFQNYKQILEIPNITNAFIISVARTVIGTTLTVLCSGFLGFMMTQQKMT 118
Cdd:COG0395    28 FLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFR 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 119 GRKFVYRFIISTMYVS--AGTIPVYMLFNYLGLLDNFLVYVIPGMV--SAYNIVLVKTYIESsIPSSLQESAEMDGAGII 194
Cdd:COG0395   108 GRKLLFLLILATLMIPgqVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRS-IPRELEEAARIDGASEF 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 195 TMFFKIALPLMVPILATLAIFSAVGQWNSFMDTVIYVTREDLHTLQYVLYRYLTQStalaneinsgnisidqvaataQTA 274
Cdd:COG0395   187 RIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQY---------------------GTD 245

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1937425670 275 QSVKLTVTMMVVLPIFAIYPFFQRFFVKGITIGAVKG 311
Cdd:COG0395   246 WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
malG PRK10998
maltose ABC transporter permease MalG;
138-311 9.89e-08

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 52.40  E-value: 9.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 138 IPVYMLFNYLGLLDNFL-VYVIPGMVSAY------NIVLVKTYIESsIPSSLQESAEMDGAGIITMFFKIALPLMVPILA 210
Cdd:PRK10998  138 VALYALFDRLGQYIPFIgLNTHGGVIFAYlggialHVWTIKGYFET-IDSSLEEAAALDGATPWQAFRLVLLPLSVPILA 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 211 TLAIFSAVGQWNSFMDTVIYVTREDLHTLQYVLYRYLTQSTALANEInsgnisidqvAATAqtaqsvkltvtMMVVLPIF 290
Cdd:PRK10998  217 VVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDF----------AAAA-----------VLSAIPIT 275

                         170       180
                  ....*....|....*....|.
gi 1937425670 291 AIYPFFQRFFVKGITIGAVKG 311
Cdd:PRK10998  276 VVFLLAQRWLVGGLTAGGVKG 296
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 87-225 5.55e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 49.20  E-value: 5.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670  87 FIISVARTVIGTTLTVLCSGFLGFMMTQQKMTGRKFVYRFIISTMYV--SAGTIPVYMLFNYLGLLDNFLVYVIPGMV-- 162
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLpsLVLGLLLVLLFGVLLGWGILPGLGLPALIla 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1937425670 163 ----SAYNIVLVKTYIESsIPSSLQESAEMDGAGIITMFFKIALPLMVPILATLAIFSAVGQWNSFM 225
Cdd:cd06261    81 llliAPFARLIRRAALES-IPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFA 146
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 120-225 2.56e-03

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 38.05  E-value: 2.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 120 RKFVYRFIISTMYVSagTIPVYMLFNYLGLLDNFLVYVIPGMV-----SAYNIVLVKTYIESSIPSSLQESAEMDGAGII 194
Cdd:pfam00528  17 DRLLRPLIDLLQALP--SFVLAILLVVIAILSILGHGILPAIIlallgWAGYARLIRRAALRSLPSDLVEAARALGASRW 94

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1937425670 195 TMFFKIALPLMVPILATLAIFSAVGQWNSFM 225
Cdd:pfam00528  95 QIFRKIILPNALPPILTGLALAFGGALGGAV 125
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 39-311 3.60e-65

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 206.10  E-value: 3.60e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670  39 CAYPFYYIFINTISDNQLSAMGEVLFIPKDIHFQNYKQILEIPNITNAFIISVARTVIGTTLTVLCSGFLGFMMTQQKMT 118
Cdd:COG0395    28 FLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFR 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 119 GRKFVYRFIISTMYVS--AGTIPVYMLFNYLGLLDNFLVYVIPGMV--SAYNIVLVKTYIESsIPSSLQESAEMDGAGII 194
Cdd:COG0395   108 GRKLLFLLILATLMIPgqVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRS-IPRELEEAARIDGASEF 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 195 TMFFKIALPLMVPILATLAIFSAVGQWNSFMDTVIYVTREDLHTLQYVLYRYLTQStalaneinsgnisidqvaataQTA 274
Cdd:COG0395   187 RIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQY---------------------GTD 245

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1937425670 275 QSVKLTVTMMVVLPIFAIYPFFQRFFVKGITIGAVKG 311
Cdd:COG0395   246 WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 41-311 7.84e-34

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 124.88  E-value: 7.84e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670  41 YPFYYIFIntISDNQLSAMGEVLFIPKDIHFQNYKQILEIPN----ITNAFIISVARTVIGTTLTVLCsgflGFMMTQQK 116
Cdd:COG3833    31 FPILWVVS--ASFNPGGSLYSSSLIPENFTLENYKKLFTETPflrwFLNSLIVAVVTAIISVFLAALA----AYAFSRFR 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 117 MTGRK-FVYRFIISTMY-VSAGTIPVYMLFNYLGLLDN----FLVYVIPGMvsAYNIVLVKTYIESsIPSSLQESAEMDG 190
Cdd:COG3833   105 FKGRKaGLLALLLLQMFpAFLALVALYLLLSALGLLNTllglILVYLGGAI--PFNTWLMKGYFDT-IPKELDEAAKIDG 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 191 AGIITMFFKIALPLMVPILATLAIFSAVGQWNSFMDTVIYVTREDLHTLQYVLYRYLTQSTalaneinsgNISIDQVAAT 270
Cdd:COG3833   182 ASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVSDQR---------NTNWGVFAAG 252

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1937425670 271 AqtaqsvkltvtMMVVLPIFAIYPFFQRFFVKGITIGAVKG 311
Cdd:COG3833   253 A-----------VLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
71-231 9.62e-12

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 64.39  E-value: 9.62e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670  71 FQNYKQILEIPNITNAFIISVARTVIGTTLTVLCSGFLGFMMTQqKMTGRKFvYRFII----STMYVSAGTIPVYMLFNY 146
Cdd:COG1175    62 LDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGF-FRTLFflpwVISPVVVALIWKWLFNPD 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 147 LGLLDNFLV--------------YVIPGMV-------SAYNIVLVKTYIeSSIPSSLQESAEMDGAGIITMFFKIALPLM 205
Cdd:COG1175   140 YGLLNALLGalglepinwlgdpsLALPAVIivtvwkgTGFNMLIFLAGL-QSIPRELYEAARIDGASPWQRFRRITLPLL 218

                         170       180
                  ....*....|....*....|....*.
gi 1937425670 206 VPILATLAIFSAVGQWNSFmdTVIYV 231
Cdd:COG1175   219 RPTILFVLVLSTIGALQVF--DLVYV 242
malG PRK10998
maltose ABC transporter permease MalG;
138-311 9.89e-08

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 52.40  E-value: 9.89e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 138 IPVYMLFNYLGLLDNFL-VYVIPGMVSAY------NIVLVKTYIESsIPSSLQESAEMDGAGIITMFFKIALPLMVPILA 210
Cdd:PRK10998  138 VALYALFDRLGQYIPFIgLNTHGGVIFAYlggialHVWTIKGYFET-IDSSLEEAAALDGATPWQAFRLVLLPLSVPILA 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 211 TLAIFSAVGQWNSFMDTVIYVTREDLHTLQYVLYRYLTQSTALANEInsgnisidqvAATAqtaqsvkltvtMMVVLPIF 290
Cdd:PRK10998  217 VVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDF----------AAAA-----------VLSAIPIT 275

                         170       180
                  ....*....|....*....|.
gi 1937425670 291 AIYPFFQRFFVKGITIGAVKG 311
Cdd:PRK10998  276 VVFLLAQRWLVGGLTAGGVKG 296
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 87-225 5.55e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 49.20  E-value: 5.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670  87 FIISVARTVIGTTLTVLCSGFLGFMMTQQKMTGRKFVYRFIISTMYV--SAGTIPVYMLFNYLGLLDNFLVYVIPGMV-- 162
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLpsLVLGLLLVLLFGVLLGWGILPGLGLPALIla 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1937425670 163 ----SAYNIVLVKTYIESsIPSSLQESAEMDGAGIITMFFKIALPLMVPILATLAIFSAVGQWNSFM 225
Cdd:cd06261    81 llliAPFARLIRRAALES-IPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFA 146
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 64-250 1.83e-06

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 48.18  E-value: 1.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670  64 FIPKDIHFQNYKQILEIPNITNAFIISVARTVIGTTLTVLCSGFLGFMMTQQKMTGRKFVYRFIISTMYVS--AGTIPVY 141
Cdd:COG1177    40 FPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPgiVLGVALL 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 142 MLFNYLGLLDNF----LVYVIPGMVSAYNIVLVKTyieSSIPSSLQESAEMDGAGIITMFFKIALPLMVPILATLAIFSA 217
Cdd:COG1177   120 LLFSALGLSGGLwgliLAHVVFTLPFVVLVVLARL---QGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAF 196

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1937425670 218 VgqwNSFMDTVI--YVTREDLHTLQYVLYRYLTQS 250
Cdd:COG1177   197 T---LSFDEFVItlFLAGPGVTTLPVYIYSMIRRG 228
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
126-304 3.04e-05

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 44.73  E-value: 3.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 126 FIISTMYVSAGTIPVYMLFNYLGLLDNFLVYVIPGMVSAYNIVLVKTYIeSSIPSSLQESAEMDGAGIITMFFKIALPLM 205
Cdd:PRK10973  118 FITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFF-MTLPDELVEAARIDGASPMRFFWDIVLPLS 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 206 VPILATLAIFSAVGQWNSFMDTVIYVTREDLhtlqyvlyryltqSTALAneinsgniSIDQVAATAQTAQSVKLTVTMMV 285
Cdd:PRK10973  197 KTNLAALFVITFIYGWNQYLWPLLIITDVSL-------------GTAVA--------GIKGMIATGEGTTEWNQVMAAML 255

                         170       180
                  ....*....|....*....|.
gi 1937425670 286 V--LPIFAIYPFFQRFFVKGI 304
Cdd:PRK10973  256 LtlIPPVVIVLAMQRAFVRGL 276
malF PRK10999
maltose ABC transporter permease MalF;
177-224 3.21e-05

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 45.34  E-value: 3.21e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1937425670 177 SIPSSLQESAEMDGAGIITMFFKIALPLMVPILATLAIFSAVGQWNSF 224
Cdd:PRK10999  400 AIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNF 447
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
64-218 1.14e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 43.61  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670  64 FIPKDIHFQNYKQILEIPNITNAFIISVARTVIGTTLTVLCSGFLGFMMTQQKMTGRKFVYR-----FIISTMYVSAGTI 138
Cdd:COG1178   317 ALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRlamlpYAVPGIVLGLGLL 396

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 139 PVYMLFNYLGLLDNFLVYVIPGMVSAYNIVLVktYIESS---IPSSLQESAEMDGAGIITMFFKIALPLMVPILATLAIF 215
Cdd:COG1178   397 LLFNRPLPLLLYGTLAILVLAYVVRFLPFALR--SLEAAlaqIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALL 474


                  ...
gi 1937425670 216 SAV 218
Cdd:COG1178   475 VFV 477
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
39-214 7.86e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 40.91  E-value: 7.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670  39 CAYPFYYIFINTISDNqlsamgevlfipkdihFQNYKQILEIPNITNAFIISVARTVIGTTLTVLCSGFLGFMMTQQKMT 118
Cdd:COG1178    24 VLLPLLALLLRAFTDG----------------LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFP 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 119 GRKFVYRFIISTMYvsagtIPVY-------MLFNYLGLLDNFL----------VYVIPGMVSA-------YNIVLVKTYI 174
Cdd:COG1178    88 GRRLLRWLLLLPLA-----LPPYvvalawiALFGPNGLLNTLLralfgleppdIYGLGGIILVlvlfnypYVYLLLRAAL 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1937425670 175 ESsIPSSLQESAEMDGAGIITMFFKIALPLMVPILATLAI 214
Cdd:COG1178   163 RS-IDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGAL 201
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
177-208 1.48e-03

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 39.42  E-value: 1.48e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1937425670 177 SIPSSLQESAEMDGAGIITMFFKIALPLMVPI 208
Cdd:PRK10561  168 SIPRSLVEAAAIDGAGPIRRFFKLALPLIAPV 199
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 120-225 2.56e-03

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 38.05  E-value: 2.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1937425670 120 RKFVYRFIISTMYVSagTIPVYMLFNYLGLLDNFLVYVIPGMV-----SAYNIVLVKTYIESSIPSSLQESAEMDGAGII 194
Cdd:pfam00528  17 DRLLRPLIDLLQALP--SFVLAILLVVIAILSILGHGILPAIIlallgWAGYARLIRRAALRSLPSDLVEAARALGASRW 94

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1937425670 195 TMFFKIALPLMVPILATLAIFSAVGQWNSFM 225
Cdd:pfam00528  95 QIFRKIILPNALPPILTGLALAFGGALGGAV 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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