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Conserved domains on  [gi|1939822112|ref|WP_196719620|]
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MULTISPECIES: fimbrial protein [Providencia]

Protein Classification

fimbrial protein( domain architecture ID 10007530)

fimbrial protein similar to Escherichia coli fimbrial adapter PapF, which is required for the correct presentation of the PapG adhesin at the distal end of the tip fibrillum

Gene Ontology:  GO:0009289|GO:0007155
PubMed:  1670938|22411982|2890081

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
5-178 1.29e-34

Pilin (type 1 fimbrial protein) [Cell motility];


:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 119.76  E-value: 1.29e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112   5 ITSGVFSLILSIGtLPAVSTAHAQGSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQ-GPARPFVIRLVNCvl 83
Cdd:COG3539     1 MKKLLLALLLALA-LSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGStSGPKPFSIKLTNC-- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  84 erqnpDKPNWQYFRVTFDG---SHDRGLFGVN--GQAQGVGLQIQREgDGEIAIPGQGMSMSALTA-GTKDLTYRLRLVA 157
Cdd:COG3539    78 -----DAGTSNSVKVTFTGtadSANPGLLANTgsGGASGVGIQLLDS-DGTPIPLGTPSSAVTLTSnGSATLPFYARYVA 151

                         170       180
                  ....*....|....*....|.
gi 1939822112 158 NNRPLASGQYYSQLRFKLDYE 178
Cdd:COG3539   152 TGATVTAGSFNATATFTIDYQ 172
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
5-178 1.29e-34

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 119.76  E-value: 1.29e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112   5 ITSGVFSLILSIGtLPAVSTAHAQGSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQ-GPARPFVIRLVNCvl 83
Cdd:COG3539     1 MKKLLLALLLALA-LSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGStSGPKPFSIKLTNC-- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  84 erqnpDKPNWQYFRVTFDG---SHDRGLFGVN--GQAQGVGLQIQREgDGEIAIPGQGMSMSALTA-GTKDLTYRLRLVA 157
Cdd:COG3539    78 -----DAGTSNSVKVTFTGtadSANPGLLANTgsGGASGVGIQLLDS-DGTPIPLGTPSSAVTLTSnGSATLPFYARYVA 151

                         170       180
                  ....*....|....*....|.
gi 1939822112 158 NNRPLASGQYYSQLRFKLDYE 178
Cdd:COG3539   152 TGATVTAGSFNATATFTIDYQ 172
PRK15210 PRK15210
fimbrial protein;
20-177 2.45e-13

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 65.10  E-value: 2.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  20 PAVSTAHAQGSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRR-DGQGPARPFVIRLVNCVLERQNPDKPN----WQ 94
Cdd:PRK15210   26 TPTAGPFGSGKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTaDATTESKPFTIHLQNCAFDPNIPDTAGsagkMS 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  95 YFRVTFDGSHD--RGLFGVNGQAQGVGLQIQREGDGEIAIPGQGM---SMSALTAGTKDLTYRLRLVANNRPLASGQYYS 169
Cdd:PRK15210  106 KVTVSFSGTANtsKKAYTTSGSAQHVGVQLLKSDNTSIIEPNTPMpdgDAQQLQAGNNELNFFARLIALDNGVTPGDFNA 185


                  ....*...
gi 1939822112 170 QLRFKLDY 177
Cdd:PRK15210  186 SVTYTLKY 193
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
5-178 1.29e-34

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 119.76  E-value: 1.29e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112   5 ITSGVFSLILSIGtLPAVSTAHAQGSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQ-GPARPFVIRLVNCvl 83
Cdd:COG3539     1 MKKLLLALLLALA-LSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGStSGPKPFSIKLTNC-- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  84 erqnpDKPNWQYFRVTFDG---SHDRGLFGVN--GQAQGVGLQIQREgDGEIAIPGQGMSMSALTA-GTKDLTYRLRLVA 157
Cdd:COG3539    78 -----DAGTSNSVKVTFTGtadSANPGLLANTgsGGASGVGIQLLDS-DGTPIPLGTPSSAVTLTSnGSATLPFYARYVA 151

                         170       180
                  ....*....|....*....|.
gi 1939822112 158 NNRPLASGQYYSQLRFKLDYE 178
Cdd:COG3539   152 TGATVTAGSFNATATFTIDYQ 172
PRK15210 PRK15210
fimbrial protein;
20-177 2.45e-13

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 65.10  E-value: 2.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  20 PAVSTAHAQGSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRR-DGQGPARPFVIRLVNCVLERQNPDKPN----WQ 94
Cdd:PRK15210   26 TPTAGPFGSGKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTaDATTESKPFTIHLQNCAFDPNIPDTAGsagkMS 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  95 YFRVTFDGSHD--RGLFGVNGQAQGVGLQIQREGDGEIAIPGQGM---SMSALTAGTKDLTYRLRLVANNRPLASGQYYS 169
Cdd:PRK15210  106 KVTVSFSGTANtsKKAYTTSGSAQHVGVQLLKSDNTSIIEPNTPMpdgDAQQLQAGNNELNFFARLIALDNGVTPGDFNA 185


                  ....*...
gi 1939822112 170 QLRFKLDY 177
Cdd:PRK15210  186 SVTYTLKY 193
PRK09733 PRK09733
fimbrial-like protein;
13-178 5.12e-12

fimbrial-like protein;


Pssm-ID: 182053  Cd Length: 181  Bit Score: 61.12  E-value: 5.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  13 ILSIGTLPAVS----TAHAQGSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQGPARPFVIRLVNCVLERQNP 88
Cdd:PRK09733    6 LLVAGVAMILSnnvfADEGHGIVKFKGEVISAPCSIKPGDEDLTVNLGEVADTVLKSDQKSLAEPFTIHLQDCMLSQGGT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  89 --DKpnwqyFRVTF-DGSHDRG--------LFGVNGQAQGVGLQIQREGDGEIAIpGQGMSMSALTAGT-KDLTYRLRLV 156
Cdd:PRK09733   86 tySK-----AKVTFtTANTMTGqsdllkntKETEIGGATGVGVRILDSQSGEVTL-GTPVVITFNNTNSyQELNFKARME 159

                         170       180
                  ....*....|....*....|..
gi 1939822112 157 ANNRPLASGQYYSQLRFKLDYE 178
Cdd:PRK09733  160 SPSKDATPGNVYAQADYKIAYE 181
PRK15296 PRK15296
fimbrial protein SthA;
13-178 1.53e-11

fimbrial protein SthA;


Pssm-ID: 185196  Cd Length: 181  Bit Score: 59.72  E-value: 1.53e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  13 ILSIGTLPAVSTAHAQGSVSMNGSIIETACAIDV-GSRDQTIDMGSIALTQIRRDGQ-GPARPFVIRLVNCVLERQN-PD 89
Cdd:PRK15296    8 ILAMLTAVASTPVFAQNTITFNGKIYDQACTVQVnGSTDTTIDLGNYSKERIAEKGAtTDYVPFTVSLVSCPEAGTGvPT 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  90 KPNWQYFRVTfDGShDRGLF-----GVNGQAQGVGLQIQR---------EGDGEIAIPGQGmsmsaltaGTKDLTYRLRL 155
Cdd:PRK15296   88 QAMFRFHGAT-DDS-NPTYFknadeGSETGAAGVGISIQNashsdvtdnTDDAAVNLPTDG--------STADFTYYAAM 157

                         170       180
                  ....*....|....*....|....
gi 1939822112 156 VANNR-PLASGQYYSQLRFKLDYE 178
Cdd:PRK15296  158 ANDGSaTVTGGDVSTQVTYTVSYQ 181
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 9-178 1.68e-10

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 56.90  E-value: 1.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112   9 VFSL-ILSIGTLPAVSTAHAQGSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDG-QGPARPFVIRLVNCvlerq 86
Cdd:PRK15209    5 VFALsALALTSTSVFAAESGDGTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGdKSSAKPFQIKLEDC----- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  87 npDKPNWQYFRVTFDG---SHDRGLFGVN---GQAQGVGLQIQREGDGEIAIPGqGMSMSALTAGTKDLTYRLRLVANNR 160
Cdd:PRK15209   80 --DITTNKKVNVSFNGvgdADDSTLVSVSteaGAATGVGIGIYDNANTLVELNT-GKSTTTLAAGQTVLYFTANYVSTKD 156

                         170
                  ....*....|....*...
gi 1939822112 161 PLASGQYYSQLRFKLDYE 178
Cdd:PRK15209  157 TVTTGYGNAEVDFNLSYE 174
PRK15190 PRK15190
fimbrial protein BcfE; Provisional
 30-178 3.92e-09

fimbrial protein BcfE; Provisional


Pssm-ID: 185112  Cd Length: 181  Bit Score: 53.16  E-value: 3.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  30 SVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQGPA-RPFVIRLVNC--------VLERQNPDKPNWQYFRVTf 100
Cdd:PRK15190   29 NLEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKfKPFNINLKNCsrgiagakIWFTGEPDPDNPALLAIT- 107

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1939822112 101 dgshDRGLFGVNGQAQGVGLQIQREGDGEIAIPGQGMSMSALTAGTKDLTYRLRLVANNRPLASGQYYSQLRFKLDYE 178
Cdd:PRK15190  108 ----DTGMGSGNMLASGVGVEILNDDQDTISINNADSVVYPLKAGRNTLSFYIRYKSTRPTVTSGNATAVMYFDMQYE 181
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
5-178 4.63e-06

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 44.94  E-value: 4.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112   5 ITSGVFSLILSIGTLPA---VSTAHAQGSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQGPAR-PFVIRLVN 80
Cdd:PRK15194    6 ISSAIASLLFVAGAAYAadpTPVSVDGGTIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALiPFTIQLND 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  81 CvlerqnpDKPNWQYFRVTFDGSHD---RGLFGVNG-----QAQGVGLQIQREGDGEIAIPGQGMSMS-ALTAGTKDLTY 151
Cdd:PRK15194   86 C-------DPVVAATAAVAFSGQADatnDNLLAVASstnttTATGVGIEILDNTSSILKPDGATFSANqNLIEGTNTLHF 158

                         170       180
                  ....*....|....*....|....*..
gi 1939822112 152 RLRLVANNRPLASGQYYSQLRFKLDYE 178
Cdd:PRK15194  159 SARYKATGTSASAGQANADATFIMKYE 185
PRK15191 PRK15191
fimbrial protein BcfF; Provisional
 11-178 8.32e-06

fimbrial protein BcfF; Provisional


Pssm-ID: 185113 [Multi-domain]  Cd Length: 172  Bit Score: 43.94  E-value: 8.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  11 SLILSIGTLPAVSTAHAQ-GSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQGPA-RPFVIRLVNCvlerqnp 88
Cdd:PRK15191    4 DILYGIGMLLAASGVQAHdGRVYVSGTITDNTCSLSPGSENINVAMGAVSQRQFYRAGDGSAwQPFAIDLQNC------- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  89 dKPNWQYFRVTFDGSHDR------GLFGVNGQAQGVGLQIQREGDGEIAIpGQGMSMSALTAG--TKDLTYRLRLVANNR 160
Cdd:PRK15191   77 -GSTASGVTVSFSGAADSrntdllALTAGESDASGIGIALYDQNKTLIPL-GQESDVVTLSPGqaSAHLQFYARYLADGG 154

                         170
                  ....*....|....*...
gi 1939822112 161 PLASGQYYSQLRFKLDYE 178
Cdd:PRK15191  155 AVTPGDANASATFILAYE 172
PRK09934 PRK09934
fimbriae assembly protein;
23-165 1.08e-04

fimbriae assembly protein;


Pssm-ID: 182153 [Multi-domain]  Cd Length: 171  Bit Score: 40.64  E-value: 1.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  23 STAHAQGSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQGPAR-PFVIRLVNCvlerqNPDKPNwqyfrVTFD 101
Cdd:PRK09934   21 ADPLGEINIELHGNVVDFTCTVNTADSDKTVDLGTWPTKQLLNAGDTTQPvPFSLKLEGC-----PPGSAS-----ITFT 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1939822112 102 G--SHDRGLFGVN--GQAQGVGLQIqREGDgEIAIPGQGMSMSALTAGTKDLTyrLRLVANNRPLASG 165
Cdd:PRK09934   91 GtpASDTNLLALDdpAMAQTVAIEI-RDSD-RSRLALGQASPTVEVDANGNAT--LNFYANYIALADG 154
PRK15261 PRK15261
fimbrial protein SteA; Provisional
 11-81 1.74e-03

fimbrial protein SteA; Provisional


Pssm-ID: 185169  Cd Length: 195  Bit Score: 37.45  E-value: 1.74e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1939822112  11 SLILSIgtlpaVSTAHAQGS----VSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQ---GPARPFVIRLVNC 81
Cdd:PRK15261   14 SLVMGI-----VSGAQAAGSntakVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKttiNNARTFHIDLEGC 86
lpfA PRK15289
fimbrial protein; Provisional
 11-178 1.79e-03

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 37.63  E-value: 1.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  11 SLILSIGTLPAVSTA-HAQ---GSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQGPA-RPFVIRLVNCvler 85
Cdd:PRK15289    4 NIIGGAFTLASLMLAgHALaedGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASpQKFSIKLENC---- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  86 qnpdKPNWQYFRVTFDGSHDR-----------------GLFGVNGQ---AQGVGLQIQREGDG-EIAIPGQGMSMSALTA 144
Cdd:PRK15289   80 ----PATYTQAAVRFDGTEAPggdgdlkvgtpltagnpGDFTGTGQaiaATGVGIRIFNQSDNsQVKLYNDSAYTAIDAE 155

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1939822112 145 GTKDLTYRLRLVANNRPLASGQYYSQLRFKLDYE 178
Cdd:PRK15289  156 GKAEMKFIARYVATNATVTAGTANADSQFTVEYK 189
PRK15283 PRK15283
fimbrial major subunit StfA;
1-83 4.14e-03

fimbrial major subunit StfA;


Pssm-ID: 185183  Cd Length: 186  Bit Score: 36.29  E-value: 4.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112   1 MNNSITSGVFS-LILSIGTLpAVSTAHAQGSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQGPARPFVIRLV 79
Cdd:PRK15283    1 MNTAVKAAVAAaLVMGVSSF-ANAAGSNTGTVTFTGTIEDSPCSIVVGDEHQTVNLGHIGTGSLMGGKESSKVDFHIGLE 79


                  ....
gi 1939822112  80 NCVL 83
Cdd:PRK15283   80 NCAF 83
PRK15200 PRK15200
type 1 fimbrial protein subunit FimI;
29-177 6.93e-03

type 1 fimbrial protein subunit FimI;


Pssm-ID: 185122  Cd Length: 177  Bit Score: 35.60  E-value: 6.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  29 GSVSMNGSIIETACAIDVGSRDQTIDMGsialtQIRRDG-QGPAR------PFVIRLVNCVLERqnpdkpnWQYFRVTFD 101
Cdd:PRK15200   27 GRVHLRGQLVNGGCAVATESQDLRVLMG-----QYRTNAfTGPGSfapvsvPFSLRLISCSAEV-------WRHVGIAFA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112 102 G---SHDRGLFGVNGQA---QGVGLQIQREGDGEIaIPgQGMSMSALTAGTKDLTY----RLRLVANNrpLASGQYYSQL 171
Cdd:PRK15200   95 GvtpAEDPHVFLASGEGignAGIGLALFDDQQRQI-IP-NTLPLHYAPILTSEMTLhftaRYRAISEN--MTPGRIHSEV 170


                  ....*.
gi 1939822112 172 RFKLDY 177
Cdd:PRK15200  171 WFTLVY 176
PRK15187 PRK15187
fimbrial protein BcfA; Provisional
 16-145 9.63e-03

fimbrial protein BcfA; Provisional


Pssm-ID: 185109  Cd Length: 180  Bit Score: 35.18  E-value: 9.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1939822112  16 IGTLPAVSTAHAQGSVSMNGSIIETACAIDVGSRDQTIDMGSIALTQIRRDGQGPARP--FVIRLVNCvlerqnpDKPNW 93
Cdd:PRK15187   19 LSTAQADTTTVTGGTVNFVGQVVDAACSVSADSVDQTVTLGQVRASKLTEAGMVANQKedFTIKLEDC-------DTQTS 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1939822112  94 QYFRVTFDGSHDRGLFGV------NGQAQGVGLQIQREgDGEIAIPGQGMSMSALTAG 145
Cdd:PRK15187   92 QNAAVIFNGQQDANQPGSlantagAGSATNVALQLYGP-DGQALNIGESSSTVTLNDG 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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