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Conserved domains on  [gi|1942614348|ref|WP_197457110|]
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ORF6N domain-containing protein, partial [Gardnerella sp. 30-4]

Protein Classification

ORF6N domain-containing protein( domain architecture ID 10565586)

ORF6N domain-containing protein may be a DNA-binding protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ORF6N pfam10543
ORF6N domain; This domain was identified by Iyer and colleagues.
 29-100 2.52e-34

ORF6N domain; This domain was identified by Iyer and colleagues.


:

Pssm-ID: 431348  Cd Length: 84  Bit Score: 113.03  E-value: 2.52e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1942614348  29 EKIYNIRNQKVMLDFELAEIYGYETKNFNRQIKNNIEKFEgEDFMFRLTADEFKNLRCKNFTSSWGGSRYLP 100
Cdd:pfam10543   1 LKIYEIRGQRVMLDSDLAELYGVETKRLNQAVKRNIERFP-EDFMFQLTKEELRNLRSQFVTSSGGGRRYLP 71
 
Name Accession Description Interval E-value
ORF6N pfam10543
ORF6N domain; This domain was identified by Iyer and colleagues.
 29-100 2.52e-34

ORF6N domain; This domain was identified by Iyer and colleagues.


Pssm-ID: 431348  Cd Length: 84  Bit Score: 113.03  E-value: 2.52e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1942614348  29 EKIYNIRNQKVMLDFELAEIYGYETKNFNRQIKNNIEKFEgEDFMFRLTADEFKNLRCKNFTSSWGGSRYLP 100
Cdd:pfam10543   1 LKIYEIRGQRVMLDSDLAELYGVETKRLNQAVKRNIERFP-EDFMFQLTKEELRNLRSQFVTSSGGGRRYLP 71
 
Name Accession Description Interval E-value
ORF6N pfam10543
ORF6N domain; This domain was identified by Iyer and colleagues.
 29-100 2.52e-34

ORF6N domain; This domain was identified by Iyer and colleagues.


Pssm-ID: 431348  Cd Length: 84  Bit Score: 113.03  E-value: 2.52e-34
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1942614348  29 EKIYNIRNQKVMLDFELAEIYGYETKNFNRQIKNNIEKFEgEDFMFRLTADEFKNLRCKNFTSSWGGSRYLP 100
Cdd:pfam10543   1 LKIYEIRGQRVMLDSDLAELYGVETKRLNQAVKRNIERFP-EDFMFQLTKEELRNLRSQFVTSSGGGRRYLP 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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