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Conserved domains on  [gi|1942675481|ref|WP_197518231|]
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FAD-dependent oxidoreductase, partial [Mycobacterium intermedium]

Protein Classification

flavin monoamine oxidase family protein( domain architecture ID 11440890)

flavin monoamine oxidase family protein functions as an oxidoreductase that catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

EC:  1.-.-.-
Gene Ontology:  GO:0000166|GO:0016491
SCOP:  4000128

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
55-218 2.77e-31

Monoamine oxidase [Amino acid transport and metabolism];


:

Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 118.49  E-value: 2.77e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  55 SRLGFGALSKSYFRFDRRTWdEENAFFHYLGSDDGMWAQ-WFTLPAAAGP--IVLAFNAGHRGRWVENASPSELMTTALP 131
Cdd:COG1231   274 QRLPYGAAIKVFLQFDRPFW-EEDGLYGGISLTDLPIRQtWYPSNGPDGGagVLLGYVGGDDARALAALSPEERVAAALE 352
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 132 IARQLFGADVA-PMQVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEPIsDRLYLAGEAVTVDNPATVHGALLSGRSAA 210
Cdd:COG1231   353 QLARIFGVYAAePVDYVSTDWGRDPWSRGAYAAAPPGQLTAAGPALAEPD-GRIHFAGEHTSDEWPGWVEGALESGERAA 431

                  ....*...
gi 1942675481 211 AELMRRLK 218
Cdd:COG1231   432 AEILARLG 439
 
Name Accession Description Interval E-value
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
55-218 2.77e-31

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 118.49  E-value: 2.77e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  55 SRLGFGALSKSYFRFDRRTWdEENAFFHYLGSDDGMWAQ-WFTLPAAAGP--IVLAFNAGHRGRWVENASPSELMTTALP 131
Cdd:COG1231   274 QRLPYGAAIKVFLQFDRPFW-EEDGLYGGISLTDLPIRQtWYPSNGPDGGagVLLGYVGGDDARALAALSPEERVAAALE 352
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 132 IARQLFGADVA-PMQVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEPIsDRLYLAGEAVTVDNPATVHGALLSGRSAA 210
Cdd:COG1231   353 QLARIFGVYAAePVDYVSTDWGRDPWSRGAYAAAPPGQLTAAGPALAEPD-GRIHFAGEHTSDEWPGWVEGALESGERAA 431

                  ....*...
gi 1942675481 211 AELMRRLK 218
Cdd:COG1231   432 AEILARLG 439
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
56-214 3.43e-27

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 107.19  E-value: 3.43e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  56 RLGFGALSKSYFRFDRRTWDEENafFHYLGSDDGMWA----QWFTLPAAA----GPIVLAF-NAGHRGRWVENASPSELM 126
Cdd:pfam01593 280 NLGYGPVNKVHLEFDRKFWPDLG--LLGLLSELLTGLgtafSWLTFPNRAppgkGLLLLVYvGPGDRARELEGLSDEELL 357
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 127 TTALPIARQLFGADVA-PMQVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEPISDRLYLAGEAVTVDNPATVHGALLS 205
Cdd:pfam01593 358 QAVLRDLRKLFGEEAPePLRVLVSDWHTDPWPRGSYSLPQYGPGHDDYRPLARTPDPGLFFAGEHTSTGYPGTVEGAIES 437

                  ....*....
gi 1942675481 206 GRSAAAELM 214
Cdd:pfam01593 438 GRRAARAVL 446
PLN03000 PLN03000
amine oxidase
44-218 1.96e-26

amine oxidase


Pssm-ID: 178578 [Multi-domain]  Cd Length: 881  Bit Score: 106.26  E-value: 1.96e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  44 PSPTEITLDEKSRLGFGALSKSYFRFDRRTWDEENAFFHYLGSDDGMWAQWFTL----PAAAGPIVLAFNAGHRGRWVEN 119
Cdd:PLN03000  441 PELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFysyaPVAGGPLLIALVAGEAAHKFET 520
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 120 ASPSELMTTALPIARQLF---GADVA-PMQVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEPISD-RLYLAGEAVTVD 194
Cdd:PLN03000  521 MPPTDAVTRVLHILRGIYepqGINVPdPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDgRLFFAGEATTRR 600
                         170       180
                  ....*....|....*....|....
gi 1942675481 195 NPATVHGALLSGRSAAAELMRRLK 218
Cdd:PLN03000  601 YPATMHGAFVTGLREAANMAQSAK 624
HpnE TIGR03467
squalene-associated FAD-dependent desaturase; The sequences in this family are members of the ...
46-214 1.45e-05

squalene-associated FAD-dependent desaturase; The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.


Pssm-ID: 274593 [Multi-domain]  Cd Length: 419  Bit Score: 45.05  E-value: 1.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  46 PTEITLDEKSRLGFGALSKSYFRFDRRTwDEENAFFHYLGSDdgmwAQW-FTLPAAAGPI-VLAFNAGHRGRWVEnASPS 123
Cdd:TIGR03467 260 PGEDLGALLTALGYSPITTVHLRLDRAV-RLPAPMVGLVGGL----AQWlFDRGQLAGEPgYLAVVISAARDLVD-LPRE 333
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 124 ELMTTALPIARQLFGAdVAPMQVMSSGWTVDPYAlgsySFhAPGSGLDDRRRLQEPISDRLYLAGEAVTVDNPATVHGAL 203
Cdd:TIGR03467 334 ELADRIVAELRRAFPR-VAGAKPLWARVIKEKRA----TF-AATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAV 407
                         170
                  ....*....|.
gi 1942675481 204 LSGRSAAAELM 214
Cdd:TIGR03467 408 RSGYQAAEAVL 418
 
Name Accession Description Interval E-value
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
55-218 2.77e-31

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 118.49  E-value: 2.77e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  55 SRLGFGALSKSYFRFDRRTWdEENAFFHYLGSDDGMWAQ-WFTLPAAAGP--IVLAFNAGHRGRWVENASPSELMTTALP 131
Cdd:COG1231   274 QRLPYGAAIKVFLQFDRPFW-EEDGLYGGISLTDLPIRQtWYPSNGPDGGagVLLGYVGGDDARALAALSPEERVAAALE 352
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 132 IARQLFGADVA-PMQVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEPIsDRLYLAGEAVTVDNPATVHGALLSGRSAA 210
Cdd:COG1231   353 QLARIFGVYAAePVDYVSTDWGRDPWSRGAYAAAPPGQLTAAGPALAEPD-GRIHFAGEHTSDEWPGWVEGALESGERAA 431

                  ....*...
gi 1942675481 211 AELMRRLK 218
Cdd:COG1231   432 AEILARLG 439
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
56-214 3.43e-27

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 107.19  E-value: 3.43e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  56 RLGFGALSKSYFRFDRRTWDEENafFHYLGSDDGMWA----QWFTLPAAA----GPIVLAF-NAGHRGRWVENASPSELM 126
Cdd:pfam01593 280 NLGYGPVNKVHLEFDRKFWPDLG--LLGLLSELLTGLgtafSWLTFPNRAppgkGLLLLVYvGPGDRARELEGLSDEELL 357
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 127 TTALPIARQLFGADVA-PMQVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEPISDRLYLAGEAVTVDNPATVHGALLS 205
Cdd:pfam01593 358 QAVLRDLRKLFGEEAPePLRVLVSDWHTDPWPRGSYSLPQYGPGHDDYRPLARTPDPGLFFAGEHTSTGYPGTVEGAIES 437

                  ....*....
gi 1942675481 206 GRSAAAELM 214
Cdd:pfam01593 438 GRRAARAVL 446
PLN03000 PLN03000
amine oxidase
44-218 1.96e-26

amine oxidase


Pssm-ID: 178578 [Multi-domain]  Cd Length: 881  Bit Score: 106.26  E-value: 1.96e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  44 PSPTEITLDEKSRLGFGALSKSYFRFDRRTWDEENAFFHYLGSDDGMWAQWFTL----PAAAGPIVLAFNAGHRGRWVEN 119
Cdd:PLN03000  441 PELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFysyaPVAGGPLLIALVAGEAAHKFET 520
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 120 ASPSELMTTALPIARQLF---GADVA-PMQVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEPISD-RLYLAGEAVTVD 194
Cdd:PLN03000  521 MPPTDAVTRVLHILRGIYepqGINVPdPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDgRLFFAGEATTRR 600
                         170       180
                  ....*....|....*....|....
gi 1942675481 195 NPATVHGALLSGRSAAAELMRRLK 218
Cdd:PLN03000  601 YPATMHGAFVTGLREAANMAQSAK 624
PLN02328 PLN02328
lysine-specific histone demethylase 1 homolog
52-215 2.87e-25

lysine-specific histone demethylase 1 homolog


Pssm-ID: 215187 [Multi-domain]  Cd Length: 808  Bit Score: 103.15  E-value: 2.87e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  52 DEKSRLGFGALSKSYFRFDRRTWDEENAFFHYLGSDDGMWAQWFTL----PAAAGPIVLAFNAGHRGRWVENASPSELMT 127
Cdd:PLN02328  505 DAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFysysSVSGGPLLIALVAGDAAVKFETLSPVESVK 584
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 128 TALPIARQLF---GADVA-PMQVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEPISD-RLYLAGEAVTVDNPATVHGA 202
Cdd:PLN02328  585 RVLQILRGIFhpkGIVVPdPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDgRVFFAGEATNKQYPATMHGA 664
                         170
                  ....*....|...
gi 1942675481 203 LLSGRSAAAELMR 215
Cdd:PLN02328  665 FLSGMREAANILR 677
PLN02529 PLN02529
lysine-specific histone demethylase 1
56-215 8.38e-22

lysine-specific histone demethylase 1


Pssm-ID: 178144 [Multi-domain]  Cd Length: 738  Bit Score: 93.03  E-value: 8.38e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  56 RLGFGALSKSYFRFDRRTWDEENAFFHYLGSDDGMWAQWFTLPA----AAGPIVLAFNAGHRGRWVENASPSELMTTALP 131
Cdd:PLN02529  429 RLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGyhtvSGGPALVALVAGEAAQRFENTDPSTLLHRVLS 508
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 132 IARQLF---GADVA-PMQVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEPISDRLYLAGEAVTVDNPATVHGALLSGR 207
Cdd:PLN02529  509 VLRGIYnpkGINVPdPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGL 588

                  ....*...
gi 1942675481 208 SAAAELMR 215
Cdd:PLN02529  589 REASRILH 596
PLN02976 PLN02976
amine oxidase
56-209 2.83e-18

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 82.99  E-value: 2.83e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481   56 RLGFGALSKSYFRFDRRTWDEENAFFHYLGSDDGMWAQ----WFTLPAAAGPIVLAFNAGHRGRWVENASPSELMTTALP 131
Cdd:PLN02976  1019 RLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQcfmfWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALM 1098
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  132 IARQLFGADVAPMQVMS--SGWTVDPYALGSYSFHAPGSGLDDRRRLQEPISDRLYLAGEAVTVDNPATVHGALLSG-RS 208
Cdd:PLN02976  1099 VLRKLFGEALVPDPVASvvTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGlRE 1178

                   .
gi 1942675481  209 A 209
Cdd:PLN02976  1179 A 1179
PLN02268 PLN02268
probable polyamine oxidase
55-217 6.17e-17

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 78.58  E-value: 6.17e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  55 SRLGFGALSKSYFRFDRRTWdeENAFFHYLGSDDGMWAQWF-TLPAAAG-PIVLAFNAGHRGRWVENASPSELMTTALPI 132
Cdd:PLN02268  273 SDLGVGIENKIALHFDSVFW--PNVEFLGVVAPTSYGCSYFlNLHKATGhPVLVYMPAGRLARDIEKLSDEAAANFAMSQ 350
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 133 ARQLFGADVAPMQVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEPIsDRLYLAGEAVTVDNPATVHGALLSGRSAAAE 212
Cdd:PLN02268  351 LKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPV-DNLFFAGEATSSDFPGSVHGAYSTGVMAAEE 429

                  ....*
gi 1942675481 213 LMRRL 217
Cdd:PLN02268  430 CRMRL 434
PLN02568 PLN02568
polyamine oxidase
145-218 3.55e-09

polyamine oxidase


Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 55.99  E-value: 3.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 145 QVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEP---ISD---------RLYLAGEAVTVDNPATVHGALLSGRSAAAE 212
Cdd:PLN02568  451 KVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPlprISDhdqaggpplQLLFAGEATHRTHYSTTHGAYFSGLREANR 530

                  ....*.
gi 1942675481 213 LMRRLK 218
Cdd:PLN02568  531 LLQHYK 536
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
66-217 2.12e-06

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 47.54  E-value: 2.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  66 YFRFDRRTWDEENAFFHYLGSddgmWAQW-FTLPAAAGPI--VLAFNAGHRGRWVEnASPSELMTTALPIARQLFGADVA 142
Cdd:COG3349   298 HLWLDRPVTLGPPPFAGLVGS----TSQWvFDRGAGDGGQggVLSVVISAADRLLD-LSREELAAEVWAELAALLPAARE 372
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1942675481 143 PMQVMSSGwTVDPYALgsysFHA-PGSgldDRRRL-QEPISDRLYLAGEAVTVDNPATVHGALLSGRSAAAELMRRL 217
Cdd:COG3349   373 ALPVWSRV-VREKRAT----FAAtPGS---DRLRPgARTPIPNLFLAGDWTATGLPATMEGAVRSGRRAANAILARL 441
PLN02676 PLN02676
polyamine oxidase
115-218 5.25e-06

polyamine oxidase


Pssm-ID: 215362 [Multi-domain]  Cd Length: 487  Bit Score: 46.25  E-value: 5.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 115 RWVENASPSELMTTALPIARQLFGADVA-PMQVMSSGWTVDPYALGSYSFHAPGSGLDDRRRLQEPISdRLYLAGEAVTV 193
Cdd:PLN02676  371 RRIEQQPDSETKAEIMEVLRKMFGPNIPeATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVG-RVYFTGEHTSE 449
                          90       100
                  ....*....|....*....|....*
gi 1942675481 194 DNPATVHGALLSGRSAAAELMRRLK 218
Cdd:PLN02676  450 KYNGYVHGAYLAGIDTANDLLECIK 474
HpnE TIGR03467
squalene-associated FAD-dependent desaturase; The sequences in this family are members of the ...
46-214 1.45e-05

squalene-associated FAD-dependent desaturase; The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.


Pssm-ID: 274593 [Multi-domain]  Cd Length: 419  Bit Score: 45.05  E-value: 1.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481  46 PTEITLDEKSRLGFGALSKSYFRFDRRTwDEENAFFHYLGSDdgmwAQW-FTLPAAAGPI-VLAFNAGHRGRWVEnASPS 123
Cdd:TIGR03467 260 PGEDLGALLTALGYSPITTVHLRLDRAV-RLPAPMVGLVGGL----AQWlFDRGQLAGEPgYLAVVISAARDLVD-LPRE 333
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942675481 124 ELMTTALPIARQLFGAdVAPMQVMSSGWTVDPYAlgsySFhAPGSGLDDRRRLQEPISDRLYLAGEAVTVDNPATVHGAL 203
Cdd:TIGR03467 334 ELADRIVAELRRAFPR-VAGAKPLWARVIKEKRA----TF-AATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAV 407
                         170
                  ....*....|.
gi 1942675481 204 LSGRSAAAELM 214
Cdd:TIGR03467 408 RSGYQAAEAVL 418
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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