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Conserved domains on  [gi|1942747651|ref|WP_197549149|]
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glycosyltransferase family 2 protein [Candidatus Nitrospira inopinata]

Protein Classification

glycosyltransferase family 2 protein( domain architecture ID 10118426)

glycosyltransferase family 2 protein catalyzes the transfer of saccharide moieties from a donor to an acceptor to form glycosidic bonds

CATH:  3.90.550.10
CAZY:  GT2
EC:  2.4.-.-
Gene Ontology:  GO:0016757|GO:0006486
PubMed:  9445404|12691742|10508766|12200473|10521532
SCOP:  3000077

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Beta4Glucosyltransferase cd02511
UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of ...
 16-257 7.41e-49

UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide; UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.


:

Pssm-ID: 133005 [Multi-domain]  Cd Length: 229  Bit Score: 162.07  E-value: 7.41e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  16 PVAVVMIALNEGHNMEAVCRNLEGWAQEVFLVDSYSQDDTVEIALRYGVYVVQRRFRGFGNQWNFALAHlpITAPWTMKL 95
Cdd:cd02511     1 TLSVVIITKNEERNIERCLESVKWAVDEIIVVDSGSTDRTVEIAKEYGAKVYQRWWDGFGAQRNFALEL--ATNDWVLSL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  96 DPDERLSDALKVSLIKAMSENKDDGFLLVRRLHFMGRPL------PVRHelLRVWRTGTCRFTDVAVNEYPVVPGRIVRV 169
Cdd:cd02511    79 DADERLTPELADEILALLATDDYDGYYVPRRNFFLGRWIrhggwyPDRQ--LRLFRRGKARFEDGRVHEQVVVDGGVGIV 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651 170 S-GEINHLDSPDLDHWLEKQNRYTTAEAITAYTNASLAAMPKLLGSSlerrmwikkhyqrlpfRHAIFFLYHWLWLGAWH 248
Cdd:cd02511   157 LkGDILHYGYKSLEEFLEKHNRYSSLEAKDLAAKGKKRSLLKGLLLG----------------RPLLAFLKMYILKRGFL 220


                  ....*....
gi 1942747651 249 AGWVGYLWA 257
Cdd:cd02511   221 DGRAGFILA 229
 
Name Accession Description Interval E-value
Beta4Glucosyltransferase cd02511
UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of ...
 16-257 7.41e-49

UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide; UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.


Pssm-ID: 133005 [Multi-domain]  Cd Length: 229  Bit Score: 162.07  E-value: 7.41e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  16 PVAVVMIALNEGHNMEAVCRNLEGWAQEVFLVDSYSQDDTVEIALRYGVYVVQRRFRGFGNQWNFALAHlpITAPWTMKL 95
Cdd:cd02511     1 TLSVVIITKNEERNIERCLESVKWAVDEIIVVDSGSTDRTVEIAKEYGAKVYQRWWDGFGAQRNFALEL--ATNDWVLSL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  96 DPDERLSDALKVSLIKAMSENKDDGFLLVRRLHFMGRPL------PVRHelLRVWRTGTCRFTDVAVNEYPVVPGRIVRV 169
Cdd:cd02511    79 DADERLTPELADEILALLATDDYDGYYVPRRNFFLGRWIrhggwyPDRQ--LRLFRRGKARFEDGRVHEQVVVDGGVGIV 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651 170 S-GEINHLDSPDLDHWLEKQNRYTTAEAITAYTNASLAAMPKLLGSSlerrmwikkhyqrlpfRHAIFFLYHWLWLGAWH 248
Cdd:cd02511   157 LkGDILHYGYKSLEEFLEKHNRYSSLEAKDLAAKGKKRSLLKGLLLG----------------RPLLAFLKMYILKRGFL 220


                  ....*....
gi 1942747651 249 AGWVGYLWA 257
Cdd:cd02511   221 DGRAGFILA 229
WcaA COG0463
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ...
 17-152 2.63e-12

Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440231 [Multi-domain]  Cd Length: 208  Bit Score: 64.72  E-value: 2.63e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  17 VAVVMIALNEGHNMEAV---CRNLEGWAQEVFLVDSYSQDDTVEIALRYG------VYVVQRRFRGFGNQWNFALAHlpI 87
Cdd:COG0463     4 VSVVIPTYNEEEYLEEAlesLLAQTYPDFEIIVVDDGSTDGTAEILRELAakdpriRVIRLERNRGKGAARNAGLAA--A 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1942747651  88 TAPWTMKLDPDERLSDALKVSLIKAMSENKDD---GFLLVRRLHFMGRPLPVRHELLRVWRTGTCRFT 152
Cdd:COG0463    82 RGDYIAFLDADDQLDPEKLEELVAALEEGPADlvyGSRLIREGESDLRRLGSRLFNLVRLLTNLPDST 149
Glycos_transf_2 pfam00535
Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, ...
 19-145 5.51e-10

Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.


Pssm-ID: 425738 [Multi-domain]  Cd Length: 166  Bit Score: 57.02  E-value: 5.51e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  19 VVMIALNEGHNMEAV---CRNLEGWAQEVFLVDSYSQDDTVEIALRY-----GVYVVQRRFR-GFGNQWNFALAHlpITA 89
Cdd:pfam00535   2 VIIPTYNEEKYLLETlesLLNQTYPNFEIIVVDDGSTDGTVEIAEEYakkdpRVRVIRLPENrGKAGARNAGLRA--ATG 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1942747651  90 PWTMKLDPDERLSDALKVSLIKAMSENKDDGFLLVRRLHFMGRPLPVRHELLRVWR 145
Cdd:pfam00535  80 DYIAFLDADDEVPPDWLEKLVEALEEDGADVVVGSRYVIFGETGEYRRASRITLSR 135
PRK13915 PRK13915
putative glucosyl-3-phosphoglycerate synthase; Provisional
 11-70 4.70e-03

putative glucosyl-3-phosphoglycerate synthase; Provisional


Pssm-ID: 237556 [Multi-domain]  Cd Length: 306  Bit Score: 37.97  E-value: 4.70e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1942747651  11 KAGKApVAVVMIALNE----GHNMEAVCRNL-EGWAQEVFLVDSYSQDDTVEIALRYGVYVVQRR 70
Cdd:PRK13915   28 KAGRT-VSVVLPALNEeetvGKVVDSIRPLLmEPLVDELIVIDSGSTDATAERAAAAGARVVSRE 91
 
Name Accession Description Interval E-value
Beta4Glucosyltransferase cd02511
UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of ...
 16-257 7.41e-49

UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide; UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.


Pssm-ID: 133005 [Multi-domain]  Cd Length: 229  Bit Score: 162.07  E-value: 7.41e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  16 PVAVVMIALNEGHNMEAVCRNLEGWAQEVFLVDSYSQDDTVEIALRYGVYVVQRRFRGFGNQWNFALAHlpITAPWTMKL 95
Cdd:cd02511     1 TLSVVIITKNEERNIERCLESVKWAVDEIIVVDSGSTDRTVEIAKEYGAKVYQRWWDGFGAQRNFALEL--ATNDWVLSL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  96 DPDERLSDALKVSLIKAMSENKDDGFLLVRRLHFMGRPL------PVRHelLRVWRTGTCRFTDVAVNEYPVVPGRIVRV 169
Cdd:cd02511    79 DADERLTPELADEILALLATDDYDGYYVPRRNFFLGRWIrhggwyPDRQ--LRLFRRGKARFEDGRVHEQVVVDGGVGIV 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651 170 S-GEINHLDSPDLDHWLEKQNRYTTAEAITAYTNASLAAMPKLLGSSlerrmwikkhyqrlpfRHAIFFLYHWLWLGAWH 248
Cdd:cd02511   157 LkGDILHYGYKSLEEFLEKHNRYSSLEAKDLAAKGKKRSLLKGLLLG----------------RPLLAFLKMYILKRGFL 220


                  ....*....
gi 1942747651 249 AGWVGYLWA 257
Cdd:cd02511   221 DGRAGFILA 229
WcaA COG0463
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ...
 17-152 2.63e-12

Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440231 [Multi-domain]  Cd Length: 208  Bit Score: 64.72  E-value: 2.63e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  17 VAVVMIALNEGHNMEAV---CRNLEGWAQEVFLVDSYSQDDTVEIALRYG------VYVVQRRFRGFGNQWNFALAHlpI 87
Cdd:COG0463     4 VSVVIPTYNEEEYLEEAlesLLAQTYPDFEIIVVDDGSTDGTAEILRELAakdpriRVIRLERNRGKGAARNAGLAA--A 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1942747651  88 TAPWTMKLDPDERLSDALKVSLIKAMSENKDD---GFLLVRRLHFMGRPLPVRHELLRVWRTGTCRFT 152
Cdd:COG0463    82 RGDYIAFLDADDQLDPEKLEELVAALEEGPADlvyGSRLIREGESDLRRLGSRLFNLVRLLTNLPDST 149
Glycos_transf_2 pfam00535
Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, ...
 19-145 5.51e-10

Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.


Pssm-ID: 425738 [Multi-domain]  Cd Length: 166  Bit Score: 57.02  E-value: 5.51e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  19 VVMIALNEGHNMEAV---CRNLEGWAQEVFLVDSYSQDDTVEIALRY-----GVYVVQRRFR-GFGNQWNFALAHlpITA 89
Cdd:pfam00535   2 VIIPTYNEEKYLLETlesLLNQTYPNFEIIVVDDGSTDGTVEIAEEYakkdpRVRVIRLPENrGKAGARNAGLRA--ATG 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1942747651  90 PWTMKLDPDERLSDALKVSLIKAMSENKDDGFLLVRRLHFMGRPLPVRHELLRVWR 145
Cdd:pfam00535  80 DYIAFLDADDEVPPDWLEKLVEALEEDGADVVVGSRYVIFGETGEYRRASRITLSR 135
GT_2_like_a cd02522
GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function; ...
 17-146 4.58e-07

GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function; Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133013 [Multi-domain]  Cd Length: 221  Bit Score: 49.49  E-value: 4.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  17 VAVVMIALNEGHNMEAVCRNLEGWAQ---EVFLVDSYSQDDTVEIALRYGVYVVQRRfRGFGNQWNFALAHlpITAPWTM 93
Cdd:cd02522     1 LSIIIPTLNEAENLPRLLASLRRLNPlplEIIVVDGGSTDGTVAIARSAGVVVISSP-KGRARQMNAGAAA--ARGDWLL 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1942747651  94 KLDPDERLSDALKVSLIKAMSENKDD-GFLlvrRLHFMGRPLPVRHELLRV-WRT 146
Cdd:cd02522    78 FLHADTRLPPDWDAAIIETLRADGAVaGAF---RLRFDDPGPRLRLLELGAnLRS 129
BcsA COG1215
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1, ...
 16-126 4.40e-05

Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility];


Pssm-ID: 440828 [Multi-domain]  Cd Length: 303  Bit Score: 44.35  E-value: 4.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  16 PVAVVMIALNEGHNMEAVCRNLEgwAQ-------EVFLVDSYSQDDTVEIALRYG------VYVVQRRFRGFGNQWNFAL 82
Cdd:COG1215    30 RVSVIIPAYNEEAVIEETLRSLL--AQdypkeklEVIVVDDGSTDETAEIARELAaeyprvRVIERPENGGKAAALNAGL 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1942747651  83 AHlpITAPWTMKLDPDERLS-DALKvSLIKAMSENKDD---GFLLVRR 126
Cdd:COG1215   108 KA--ARGDIVVFLDADTVLDpDWLR-RLVAAFADPGVGasgANLAFRR 152
Glyco_tranf_GTA_type cd00761
Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a ...
 19-126 7.91e-05

Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.


Pssm-ID: 132997 [Multi-domain]  Cd Length: 156  Bit Score: 42.11  E-value: 7.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  19 VVMIALNE----GHNMEAVCR-NLEGWaqEVFLVDSYSQDDTVEIALRYG------VYVVQRRFRGFGNQWNFALAHlpI 87
Cdd:cd00761     1 VIIPAYNEepylERCLESLLAqTYPNF--EVIVVDDGSTDGTLEILEEYAkkdprvIRVINEENQGLAAARNAGLKA--A 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1942747651  88 TAPWTMKLDPDERLS-DALKVSLIKAMSENKDD-----GFLLVRR 126
Cdd:cd00761    77 RGEYILFLDADDLLLpDWLERLVAELLADPEADavggpGNLLFRR 121
GT_2_like_c cd04186
Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse ...
 43-129 8.81e-04

Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133029 [Multi-domain]  Cd Length: 166  Bit Score: 39.08  E-value: 8.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942747651  43 EVFLVDSYSQDDTVEIALRYGVYVV---QRRFRGFGNQWNFALAHLpiTAPWTMKLDPDERLS-DALKvSLIKAMSENKD 118
Cdd:cd04186    28 EVIVVDNASTDGSVELLRELFPEVRlirNGENLGFGAGNNQGIREA--KGDYVLLLNPDTVVEpGALL-ELLDAAEQDPD 104

                          90       100
                  ....*....|....*....|
gi 1942747651 119 DG---------FLLVRRLHF 129
Cdd:cd04186   105 VGivgpkvsgaFLLVRREVF 124
DPM_DPG-synthase_like cd04179
DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; DPM1 is the ...
 19-75 3.69e-03

DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.


Pssm-ID: 133022 [Multi-domain]  Cd Length: 185  Bit Score: 37.55  E-value: 3.69e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1942747651  19 VVMIALNEGHNMEAVCRNL-----EGWAQEVFLVDSYSQDDTVEIALRYGVYVVQRRF----RGFG 75
Cdd:cd04179     1 VVIPAYNEEENIPELVERLlavleEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVirlsRNFG 66
PRK13915 PRK13915
putative glucosyl-3-phosphoglycerate synthase; Provisional
 11-70 4.70e-03

putative glucosyl-3-phosphoglycerate synthase; Provisional


Pssm-ID: 237556 [Multi-domain]  Cd Length: 306  Bit Score: 37.97  E-value: 4.70e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1942747651  11 KAGKApVAVVMIALNE----GHNMEAVCRNL-EGWAQEVFLVDSYSQDDTVEIALRYGVYVVQRR 70
Cdd:PRK13915   28 KAGRT-VSVVLPALNEeetvGKVVDSIRPLLmEPLVDELIVIDSGSTDATAERAAAAGARVVSRE 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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