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Conserved domains on  [gi|1946299423|ref|WP_198136652|]
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MULTISPECIES: DUF6795 domain-containing protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6795 pfam20598
Domain of unknown function (DUF6795); This domain, mainly found in bacteria and eukaryotes, is ...
 13-118 1.31e-39

Domain of unknown function (DUF6795); This domain, mainly found in bacteria and eukaryotes, is functionally uncharacterized. This domain is approximately 100 amino acids in length and, based on structure prediction and overlaps with other families, belongs to the transthyretin superfamily. It is likely to have a seven stranded beta sandwich fold.


:

Pssm-ID: 466747  Cd Length: 103  Bit Score: 128.48  E-value: 1.31e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946299423  13 VEGTVLLDGKPVQGVEIEQEYHWHwKNEHRKNTVQSDAQGRFHLPAVTAKSLtaGFMPHEPVIGQRLTLRYQGKDHKGWV 92
Cdd:pfam20598   1 VSGVITLNGKPVAGAKVERSLTWS-DEKGEDDETTTDENGRFSFPEKIISSR--PNPLFEFVVRQQITVEYDGKEYLLWY 77

                          90       100
                  ....*....|....*....|....*.
gi 1946299423  93 FTKHNYDDLGEVKNRPLKFVCELNSE 118
Cdd:pfam20598  78 ATKRSYEENSELGGKPLNLTCELTNE 103
 
Name Accession Description Interval E-value
DUF6795 pfam20598
Domain of unknown function (DUF6795); This domain, mainly found in bacteria and eukaryotes, is ...
 13-118 1.31e-39

Domain of unknown function (DUF6795); This domain, mainly found in bacteria and eukaryotes, is functionally uncharacterized. This domain is approximately 100 amino acids in length and, based on structure prediction and overlaps with other families, belongs to the transthyretin superfamily. It is likely to have a seven stranded beta sandwich fold.


Pssm-ID: 466747  Cd Length: 103  Bit Score: 128.48  E-value: 1.31e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946299423  13 VEGTVLLDGKPVQGVEIEQEYHWHwKNEHRKNTVQSDAQGRFHLPAVTAKSLtaGFMPHEPVIGQRLTLRYQGKDHKGWV 92
Cdd:pfam20598   1 VSGVITLNGKPVAGAKVERSLTWS-DEKGEDDETTTDENGRFSFPEKIISSR--PNPLFEFVVRQQITVEYDGKEYLLWY 77

                          90       100
                  ....*....|....*....|....*.
gi 1946299423  93 FTKHNYDDLGEVKNRPLKFVCELNSE 118
Cdd:pfam20598  78 ATKRSYEENSELGGKPLNLTCELTNE 103
COG5266 COG5266
Uncharacterized protein, contains GH25 family domain [General function prediction only];
6-57 5.16e-06

Uncharacterized protein, contains GH25 family domain [General function prediction only];


Pssm-ID: 444079 [Multi-domain]  Cd Length: 261  Bit Score: 43.92  E-value: 5.16e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1946299423   6 TLYLFSEVEGTVLLDGKPVQGVEIEQEYH-WHWKNEHRKNTVQSDAQGRFHLP 57
Cdd:COG5266   172 DLKAGETLTFQVLYDGKPLAGAEVEVEYGgDRYPDDAGAQVLKTDADGKFTFT 224
 
Name Accession Description Interval E-value
DUF6795 pfam20598
Domain of unknown function (DUF6795); This domain, mainly found in bacteria and eukaryotes, is ...
 13-118 1.31e-39

Domain of unknown function (DUF6795); This domain, mainly found in bacteria and eukaryotes, is functionally uncharacterized. This domain is approximately 100 amino acids in length and, based on structure prediction and overlaps with other families, belongs to the transthyretin superfamily. It is likely to have a seven stranded beta sandwich fold.


Pssm-ID: 466747  Cd Length: 103  Bit Score: 128.48  E-value: 1.31e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1946299423  13 VEGTVLLDGKPVQGVEIEQEYHWHwKNEHRKNTVQSDAQGRFHLPAVTAKSLtaGFMPHEPVIGQRLTLRYQGKDHKGWV 92
Cdd:pfam20598   1 VSGVITLNGKPVAGAKVERSLTWS-DEKGEDDETTTDENGRFSFPEKIISSR--PNPLFEFVVRQQITVEYDGKEYLLWY 77

                          90       100
                  ....*....|....*....|....*.
gi 1946299423  93 FTKHNYDDLGEVKNRPLKFVCELNSE 118
Cdd:pfam20598  78 ATKRSYEENSELGGKPLNLTCELTNE 103
COG5266 COG5266
Uncharacterized protein, contains GH25 family domain [General function prediction only];
6-57 5.16e-06

Uncharacterized protein, contains GH25 family domain [General function prediction only];


Pssm-ID: 444079 [Multi-domain]  Cd Length: 261  Bit Score: 43.92  E-value: 5.16e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1946299423   6 TLYLFSEVEGTVLLDGKPVQGVEIEQEYH-WHWKNEHRKNTVQSDAQGRFHLP 57
Cdd:COG5266   172 DLKAGETLTFQVLYDGKPLAGAEVEVEYGgDRYPDDAGAQVLKTDADGKFTFT 224
DUF4198 pfam10670
Domain of unknown function (DUF4198); This family was previously missannotated in Pfam as NikM.
 12-57 2.55e-05

Domain of unknown function (DUF4198); This family was previously missannotated in Pfam as NikM.


Pssm-ID: 463175 [Multi-domain]  Cd Length: 207  Bit Score: 41.95  E-value: 2.55e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1946299423  12 EVEGTVLLDGKPVQGVEIEQEYHWHWKNEHRK-NTVQSDAQGRFHLP 57
Cdd:pfam10670 146 EFTFQVLFDGKPLAGAEVEVEYGGTGYRDAPNdAFVKTDADGVFTFT 192
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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