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Conserved domains on  [gi|1952466336|ref|WP_199671108|]
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Cna B-type domain-containing protein, partial [Bacillus cereus group sp. N18]

Protein Classification

Cna B-type domain-containing protein( domain architecture ID 10529984)

Cna B-type domain-containing protein adopts a unique fold that resembles but is the inverse of immunoglobulin-like domains, similar to the repetitive B region of Staphylococcus aureus collagen-binding protein Cna that mediates bacterial adherence to collagen

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cna_B pfam05738
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding ...
 1-52 9.22e-16

Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure.


:

Pssm-ID: 461726 [Multi-domain]  Cd Length: 88  Bit Score: 64.96  E-value: 9.22e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1952466336  1 DTKEVTAATNWKYTFEKLQAYDANGVAYKYEVKEQAVAGYESKV---NGTDITNT 52
Cdd:pfam05738 34 VTKELTAANNWTYTFTDLPKYDENGKEITYTVEEDAVPGYTTTVdakDGFTITNT 88
 
Name Accession Description Interval E-value
Cna_B pfam05738
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding ...
 1-52 9.22e-16

Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure.


Pssm-ID: 461726 [Multi-domain]  Cd Length: 88  Bit Score: 64.96  E-value: 9.22e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1952466336  1 DTKEVTAATNWKYTFEKLQAYDANGVAYKYEVKEQAVAGYESKV---NGTDITNT 52
Cdd:pfam05738 34 VTKELTAANNWTYTFTDLPKYDENGKEITYTVEEDAVPGYTTTVdakDGFTITNT 88
CollagenBindB cd00222
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates ...
 1-53 1.35e-12

Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by instances of this B region repetitive unit. The B region has one to four 23 kDa repeat units (B1-B4), which have been suggested to serve as 'stalks' that project the A region from the bacterial surface and thus facilitate bacterial adherence to collagen. Each B repeat unit has two highly similar domains (D1 and D2) placed side-by-side; both D1 and D2 are included in this model. They exhibit a unique inverse IgG-like domain fold.


Pssm-ID: 212461 [Multi-domain]  Cd Length: 92  Bit Score: 56.92  E-value: 1.35e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1952466336  1 DTKEVTAATNWKYTFEKLQAYDANGVAYKYEVKEQAVAGYESKVNGT----DITNTK 53
Cdd:cd00222   36 DTVTLTASNDWTYTFTNLPKYDENGKEITYTVKEVPVPGYTTTVTGDdggfTITNTH 92
 
Name Accession Description Interval E-value
Cna_B pfam05738
Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding ...
 1-52 9.22e-16

Cna protein B-type domain; This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure.


Pssm-ID: 461726 [Multi-domain]  Cd Length: 88  Bit Score: 64.96  E-value: 9.22e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1952466336  1 DTKEVTAATNWKYTFEKLQAYDANGVAYKYEVKEQAVAGYESKV---NGTDITNT 52
Cdd:pfam05738 34 VTKELTAANNWTYTFTDLPKYDENGKEITYTVEEDAVPGYTTTVdakDGFTITNT 88
CollagenBindB cd00222
Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates ...
 1-53 1.35e-12

Repeat unit of collagen-binding protein domain B; The collagen-binding protein mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by instances of this B region repetitive unit. The B region has one to four 23 kDa repeat units (B1-B4), which have been suggested to serve as 'stalks' that project the A region from the bacterial surface and thus facilitate bacterial adherence to collagen. Each B repeat unit has two highly similar domains (D1 and D2) placed side-by-side; both D1 and D2 are included in this model. They exhibit a unique inverse IgG-like domain fold.


Pssm-ID: 212461 [Multi-domain]  Cd Length: 92  Bit Score: 56.92  E-value: 1.35e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1952466336  1 DTKEVTAATNWKYTFEKLQAYDANGVAYKYEVKEQAVAGYESKVNGT----DITNTK 53
Cdd:cd00222   36 DTVTLTASNDWTYTFTNLPKYDENGKEITYTVKEVPVPGYTTTVTGDdggfTITNTH 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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