NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1956320571|ref|WP_200282428|]
View 

MULTISPECIES: 50S ribosomal protein L15 [unclassified Campylobacter]

Protein Classification

uL15 family ribosomal protein( domain architecture ID 36815)

uL15 family ribosomal protein such as bacteria 50S ribosomal protein L15 and mammalian 60S ribosomal protein L27a

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L27A super family cl46651
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ...
 2-93 8.77e-37

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.


The actual alignment was detected with superfamily member COG0200:

Pssm-ID: 480991  Cd Length: 148  Bit Score: 122.43  E-value: 8.77e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1956320571   2 NLTKAAGSTHKTKRIGRGQGSGMGKTATRGGKGQTARKGYNEKRGFEGGQQPLQRRLPKVGFTSKIEKPY-IINVEKI-T 79
Cdd:COG0200     5 ELKPAPGSRKKRKRVGRGIGSGKGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRRLPKRGFKNIFRKEYaVVNLGDLnK 84

                          90
                  ....*....|....
gi 1956320571  80 AIKDLAEITIENIK 93
Cdd:COG0200    85 LFEAGTEVTLEALK 98
 
Name Accession Description Interval E-value
RplO COG0200
Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 ...
 2-93 8.77e-37

Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439970  Cd Length: 148  Bit Score: 122.43  E-value: 8.77e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1956320571   2 NLTKAAGSTHKTKRIGRGQGSGMGKTATRGGKGQTARKGYNEKRGFEGGQQPLQRRLPKVGFTSKIEKPY-IINVEKI-T 79
Cdd:COG0200     5 ELKPAPGSRKKRKRVGRGIGSGKGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRRLPKRGFKNIFRKEYaVVNLGDLnK 84

                          90
                  ....*....|....
gi 1956320571  80 AIKDLAEITIENIK 93
Cdd:COG0200    85 LFEAGTEVTLEALK 98
rplO_bact TIGR01071
ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis ...
 2-125 1.16e-29

ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273428  Cd Length: 145  Bit Score: 104.33  E-value: 1.16e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1956320571   2 NLTKAAGSTHKTKRIGRGQGSGMGKTATRGGKGQTARKGYNEKRGFEGGQQPLQRRLPKVGFTSKIEKP--YIINVEKIT 79
Cdd:TIGR01071   4 ELKPAKGSKKRRKRVGRGIGSGLGKTSGRGHKGQKARSGGKVRRGFEGGQMPLYRRLPKRGFSNKRFKKeyAEVNLGKLA 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1956320571  80 -AIKDLAEITIENIKSVHKLSKSVKKVKLIGASAKSLVSKIKDENIS 125
Cdd:TIGR01071  84 kLFDNGEVVTLETLKEKGLITKKIKFVKVLGNGKLTKPLTVKAHRVS 130
Ribosomal_L27A pfam00828
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ...
 25-78 5.56e-14

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.


Pssm-ID: 459951  Cd Length: 125  Bit Score: 63.31  E-value: 5.56e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1956320571  25 GKTATRGGKGQTARKGYNeKRGFEGGQQPLQRRLPKVGFTSKIEKPY---IINVEKI 78
Cdd:pfam00828   2 GKTGGRGHKGQKSRSGKV-RPGFEGGQMPLYRRLPKRGFKHREYNIFryaPVNLGKL 57
 
Name Accession Description Interval E-value
RplO COG0200
Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 ...
 2-93 8.77e-37

Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439970  Cd Length: 148  Bit Score: 122.43  E-value: 8.77e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1956320571   2 NLTKAAGSTHKTKRIGRGQGSGMGKTATRGGKGQTARKGYNEKRGFEGGQQPLQRRLPKVGFTSKIEKPY-IINVEKI-T 79
Cdd:COG0200     5 ELKPAPGSRKKRKRVGRGIGSGKGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRRLPKRGFKNIFRKEYaVVNLGDLnK 84

                          90
                  ....*....|....
gi 1956320571  80 AIKDLAEITIENIK 93
Cdd:COG0200    85 LFEAGTEVTLEALK 98
rplO_bact TIGR01071
ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis ...
 2-125 1.16e-29

ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273428  Cd Length: 145  Bit Score: 104.33  E-value: 1.16e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1956320571   2 NLTKAAGSTHKTKRIGRGQGSGMGKTATRGGKGQTARKGYNEKRGFEGGQQPLQRRLPKVGFTSKIEKP--YIINVEKIT 79
Cdd:TIGR01071   4 ELKPAKGSKKRRKRVGRGIGSGLGKTSGRGHKGQKARSGGKVRRGFEGGQMPLYRRLPKRGFSNKRFKKeyAEVNLGKLA 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1956320571  80 -AIKDLAEITIENIKSVHKLSKSVKKVKLIGASAKSLVSKIKDENIS 125
Cdd:TIGR01071  84 kLFDNGEVVTLETLKEKGLITKKIKFVKVLGNGKLTKPLTVKAHRVS 130
Ribosomal_L27A pfam00828
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ...
 25-78 5.56e-14

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.


Pssm-ID: 459951  Cd Length: 125  Bit Score: 63.31  E-value: 5.56e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1956320571  25 GKTATRGGKGQTARKGYNeKRGFEGGQQPLQRRLPKVGFTSKIEKPY---IINVEKI 78
Cdd:pfam00828   2 GKTGGRGHKGQKSRSGKV-RPGFEGGQMPLYRRLPKRGFKHREYNIFryaPVNLGKL 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH