|
Name |
Accession |
Description |
Interval |
E-value |
| KpsC |
COG3563 |
Capsule polysaccharide export protein KpsC/LpsZ [Cell wall/membrane/envelope biogenesis]; |
2-684 |
0e+00 |
|
Capsule polysaccharide export protein KpsC/LpsZ [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442784 [Multi-domain] Cd Length: 675 Bit Score: 884.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 2 TVWVSSKGVyARRQQIALLLGHDVARYASQSPlMEGDLFAGWGQKANSRQIKQQAQALGLPYWQLEDGFIGYIGHPARGG 81
Cdd:COG3563 4 RLGVFSGGI-LRIPRLRRFLGLAGYDLRLGLP-GPADAVAGWGRKPSARRARAYAARHGLPLIRLEDGFLRSLGLGRAGE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 82 KAVSLIADPVGIYYDARQPSQLEQLIATP--CDAAMLARAEQLIHELVRLGVTKYNCYagrpaslsscsatsltakdvag 159
Cdd:COG3563 82 PPLSLVVDDLGIYYDATRPSRLEQLLATAplDDAALLARARAAIARIRAARLSKYNHA---------------------- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 160 lPAALAQrllQDGRPRVLLVDQVAGDLSIPGALASEADFIAMVEAARRNHPDARLLLRTHPDTRFGKKRGVLARL-RPSD 238
Cdd:COG3563 140 -PPFLPP---PPDPGYVLVVDQTAGDASVRYGGADAASFLEMLAAALAENPGARILVKTHPDVLAGKKQGYLTAAdADDR 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 239 VEIVADHCHPHALLNLVDAVYTVSSQLGFEALLLGKPVYCFGMPFYAGWGLTQDSKPCERRNVQVSLAQLVAAALICYPR 318
Cdd:COG3563 216 VRLLTEDVSPWSLLEGADAVYTVTSQMGFEALLAGKPVRCFGMPFYAGWGLTDDRHPCPRRRRRRTLAQLFAAAYILYPR 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 319 YLDPVLGQRCEVEEVIAIIARQQQPSPRWR-KLYLVGFSLWKRAFMQAFCHHLAEELHFVRTPPK----RLTGDEQVLVW 393
Cdd:COG3563 296 YLDPYTGQLCELEDVIDWLAAQRRAWRRDRgGLVAVGFSLWKRAFLKPFLGRPGGRLRFVRSPKKaarlALASGRKLLVW 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 394 GSRHPDLTS--------AIRVEDGFIRSRGLGSNLCRPSSLSIDPVGIYFDSRTPSGLEQLLNYQQLTEQEVQRGSALLD 465
Cdd:COG3563 376 GSKAPEELElaaqrgapVLRMEDGFLRSVGLGSDLVPPLSLVLDDLGIYYDPTRPSDLERLLNTAAFSPAELARAEALRQ 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 466 LLKQHGVSKYNVGTAQPFTPPADGRTLVLVVGQVDGDASILTGSPTIRSNEQLLWAVRAAKPEAHILYKPHPDVVAGNRA 545
Cdd:COG3563 456 RLVEAGLSKYNLGGRTPLPRLPAGRRVILVPGQVEDDASIRLGSPGIRTNLDLLRAVRAANPDAYIIYKPHPDVVAGNRK 535
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 546 GTISAACLAECVDSQVLDIGLTSLYPHVDELHTMTSLSGFEALVQGVKVTTWGQPFYSGWGLTTDAHPPARRQRKLPLPA 625
Cdd:COG3563 536 GAVPEAEALRLADLVVTDADIVSLLDAVDEVHTMTSLAGFEALLRGKRVVTYGQPFYAGWGLTRDLLPVARRTRRLSLDE 615
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 1960117148 626 LVYLTLAVYPLYIDWQTGLWISPEQLIRQLAEQGHSSTQKSSRWQRWQLKLSYLAQTLW 684
Cdd:COG3563 616 LVAATLIAYPRYVDPVTGLPCPPEVAVDRLAEQRAPLPGPLGWLRRLLRKLQGLLASLA 674
|
|
| beta_Kdo_transferase_KpsC_2 |
cd16439 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2; KpsC is a ... |
390-637 |
9.16e-137 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319747 Cd Length: 259 Bit Score: 401.82 E-value: 9.16e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 390 VLVWGSRHPDLTSA---------IRVEDGFIRSRGLGSNLCRPSSLSIDPVGIYFDSRTPSGLEQLLNYQQLTEQEVQRG 460
Cdd:cd16439 3 VVVWGSREPPELLAaaaaagipvWRVEDGFIRSVGLGADLTPPLSLVLDDRGIYYDPTRPSDLETLLNTHDFDDALLARA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 461 SALLDLLKQHGVSKYNVGTAQPFTPPADGRTLVLVVGQVDGDASILTGSPTIRSNEQLLWAVRAAKPEAHILYKPHPDVV 540
Cdd:cd16439 83 RRLRELLVELGISKYNLGGDAPLPAPPKGRRVILVPGQVEDDASIRLGSPDIKTNLELLRAVRAENPDAFIIYKPHPDVL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 541 AGNRAGTISAACLAECVDSQVLDIGLTSLYPHVDELHTMTSLSGFEALVQGVKVTTWGQPFYSGWGLTTDAHPPARRQRK 620
Cdd:cd16439 163 AGLRKGAVPEAEALKLADEVVTDASIADLLEQVDEVHTMTSLTGFEALLRGKKVTTYGLPFYAGWGLTDDRLPLPRRTRR 242
|
250
....*....|....*..
gi 1960117148 621 LPLPALVYLTLAVYPLY 637
Cdd:cd16439 243 LTLDELVAGALILYPRY 259
|
|
| beta_Kdo_transferase_KpsC_1 |
cd16440 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat1; KpsC is a ... |
40-322 |
4.15e-133 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat1; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319748 Cd Length: 262 Bit Score: 392.62 E-value: 4.15e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 40 FAGWGQKANSRQIKQQAQALGLPYWQLEDGFIGYIGHPARGGKAVSLIADPVGIYYDARQPSQLEQLIATP--CDAAMLA 117
Cdd:cd16440 1 VVGWGRKPSARRARAYAARHGLPYLALEDGFLRSLGLGVDGEPPLSLVVDDLGIYYDATRPSRLEQLLNSPlfLDAALLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 118 RAEQLIHELVRLGVTKYNcyagrpaslsscsatslTAKDvaglpaaLAQRLLQDGRPRVLLVDQVAGDLSIPGALASEAD 197
Cdd:cd16440 81 RARRAIALIREHRLSKYN-----------------HAPD-------LPPLLGPPPRPRVLVVDQTAGDASIAYGGASAAS 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 198 FIAMVEAARRNHPDARLLLRTHPDTRFGKKRGVLARL-RPSDVEIVADHCHPHALLNLVDAVYTVSSQLGFEALLLGKPV 276
Cdd:cd16440 137 FRRMLEAALEENPDAEILVKTHPDVLAGKKKGYLLELaADPRVTLLAEDVNPISLLEHADAVYTVTSQMGFEALLAGKPV 216
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1960117148 277 YCFGMPFYAGWGLTQDSKPCERRNVQVSLAQLVAAALICYPRYLDP 322
Cdd:cd16440 217 HCFGMPFYAGWGLTDDRLPCPRRRRKRSLEQLFAAAYILYPRYVDP 262
|
|
| beta_Kdo_transferase_KpsC_2 |
cd16439 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2; KpsC is a ... |
40-319 |
8.03e-84 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319747 Cd Length: 259 Bit Score: 265.08 E-value: 8.03e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 40 FAGWGQKAnSRQIKQQAQALGLPYWQLEDGFIGYIG-----HPArggkaVSLIADPVGIYYDARQPSQLEQLIAT-PCDA 113
Cdd:cd16439 3 VVVWGSRE-PPELLAAAAAAGIPVWRVEDGFIRSVGlgadlTPP-----LSLVLDDRGIYYDPTRPSDLETLLNThDFDD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 114 AMLARAEQLIHELVRLGVTKYNcyagrpaslsscsatsltakdvagLPAALAQRLLQDGRPRVLLVDQVAGDLSIpgALA 193
Cdd:cd16439 77 ALLARARRLRELLVELGISKYN------------------------LGGDAPLPAPPKGRRVILVPGQVEDDASI--RLG 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 194 SEA--DFIAMVEAARRNHPDARLLLRTHPDTRFGKKRGvlaRLRPSDVEIVADHC----HPHALLNLVDAVYTVSSQLGF 267
Cdd:cd16439 131 SPDikTNLELLRAVRAENPDAFIIYKPHPDVLAGLRKG---AVPEAEALKLADEVvtdaSIADLLEQVDEVHTMTSLTGF 207
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1960117148 268 EALLLGKPVYCFGMPFYAGWGLTQDSKPCERRNVQVSLAQLVAAALICYPRY 319
Cdd:cd16439 208 EALLRGKKVTTYGLPFYAGWGLTDDRLPLPRRTRRLTLDELVAGALILYPRY 259
|
|
| beta_Kdo_transferase_KpsC |
cd16437 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC; KpsC is a ... |
390-637 |
3.10e-82 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides, that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319745 Cd Length: 256 Bit Score: 260.90 E-value: 3.10e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 390 VLVWGSRhPDLTSA----------IRVEDGFIRSRGLGSNLCRPSSLSIDPVGIYFDSRTPSGLEQLLNYQQLTEQEVQR 459
Cdd:cd16437 1 IAVWGHR-PSAAKPviaqrhglplWRMEDGFLRSLGLGVDLEPPLSLVVDDYGIYYDASRPSDLEKLLNDAAFNTALLSR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 460 GSALLDLLKQHGVSKYNVGTAQPFTPPADgRTLVLVVGQVDGDASILTGSPTIRSNEQLLWAVRAAKPEAHILYKPHPDV 539
Cdd:cd16437 80 AEELRHRLVTGKLSKYNLAPDFVADESKR-RDIILVPGQVENDASITTGNASIHSNAALLRAVREENPDAEIWYKVHPDV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 540 VAGNRAGTISAACLAECVDSQVLDIGLTSLYPHVDELHTMTSLSGFEALVQGVKVTTWGQPFYSGWGLTTDAHPPARRQR 619
Cdd:cd16437 159 LEGKRTGYFLALRATQLVDLIAEDVDIQSLLRRVDRVHTMTSLYGFEALLAGKQVHCYGLPFYAGWGLTDDRHPCPRRRG 238
|
250
....*....|....*...
gi 1960117148 620 KLPLPALVYLTLAVYPLY 637
Cdd:cd16437 239 SLTLEELFAATLIRYPRY 256
|
|
| beta_Kdo_transferase_KpsC_1 |
cd16440 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat1; KpsC is a ... |
404-639 |
4.19e-74 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat1; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319748 Cd Length: 262 Bit Score: 239.70 E-value: 4.19e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 404 IRVEDGFIRSRGLGSNLCRPSSLSIDPVGIYFDSRTPSGLEQLLN-YQQLTEQEVQRGSALLDLLKQHGVSKYNVGTAQP 482
Cdd:cd16440 25 LALEDGFLRSLGLGVDGEPPLSLVVDDLGIYYDATRPSRLEQLLNsPLFLDAALLARARRAIALIREHRLSKYNHAPDLP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 483 FTPPADGRTLVLVVGQVDGDASILTGSPTIRSNEQLLWAVRAAKPEAHILYKPHPDVVAGNRAGTISAACLAECVdsQVL 562
Cdd:cd16440 105 PLLGPPPRPRVLVVDQTAGDASIAYGGASAASFRRMLEAALEENPDAEILVKTHPDVLAGKKKGYLLELAADPRV--TLL 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1960117148 563 --DIGLTSLYPHVDELHTMTSLSGFEALVQGVKVTTWGQPFYSGWGLTTDAHPPARRQRKLPLPALVYLTLAVYPLYID 639
Cdd:cd16440 183 aeDVNPISLLEHADAVYTVTSQMGFEALLAGKPVHCFGMPFYAGWGLTDDRLPCPRRRRKRSLEQLFAAAYILYPRYVD 261
|
|
| beta_Kdo_transferase_KpsC |
cd16437 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC; KpsC is a ... |
41-319 |
1.99e-71 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides, that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319745 Cd Length: 256 Bit Score: 232.78 E-value: 1.99e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 41 AGWGQKANSrQIKQQAQALGLPYWQLEDGFIGYIGHPARGGKAVSLIADPVGIYYDARQPSQLEQLIAT-PCDAAMLARA 119
Cdd:cd16437 2 AVWGHRPSA-AKPVIAQRHGLPLWRMEDGFLRSLGLGVDLEPPLSLVVDDYGIYYDASRPSDLEKLLNDaAFNTALLSRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 120 EQLIHELVRLGVTKYNcyagrpaslsscsatsLTAKDVAGLPAalaqrllqdGRPRVLLVDQVAGDLSIPGALASEADFI 199
Cdd:cd16437 81 EELRHRLVTGKLSKYN----------------LAPDFVADESK---------RRDIILVPGQVENDASITTGNASIHSNA 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 200 AMVEAARRNHPDARLLLRTHPDTRFGKKRGVLARLRPSD-VEIVADHCHPHALLNLVDAVYTVSSQLGFEALLLGKPVYC 278
Cdd:cd16437 136 ALLRAVREENPDAEIWYKVHPDVLEGKRTGYFLALRATQlVDLIAEDVDIQSLLRRVDRVHTMTSLYGFEALLAGKQVHC 215
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1960117148 279 FGMPFYAGWGLTQDSKPCERRNVQVSLAQLVAAALICYPRY 319
Cdd:cd16437 216 YGLPFYAGWGLTDDRHPCPRRRGSLTLEELFAATLIRYPRY 256
|
|
| beta_Kdo_transferase |
cd16436 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining ... |
390-637 |
4.68e-42 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferases. They are part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.
Pssm-ID: 319744 Cd Length: 222 Bit Score: 152.31 E-value: 4.68e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 390 VLVWGSRHPDLTSA----------IRVEDGFIRSRGLGSNLCRPSSLSIDPVGIYFDSRTPSGLEQLLNYQqlteqevqr 459
Cdd:cd16436 1 VVGWGDRRPGQRAAawalragvpvWRFEDGFLRSVSLGVLGDRPLSIVLDKLGIYYDASRPSRLEMLLKDK--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 460 gsalldllkqhgvskynvgtaqpftppadgrtLVLVVGQVDGDASILTGSPTIRSNEQLLWAVRAAKPEAHILYKPHPDV 539
Cdd:cd16436 72 --------------------------------AFLVPLQVSGDVQVRLGGAVASSFLHVLASFLEHNPDTPIIIKHHPDV 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 540 VAGNRAGT-ISAACLAECVDSQVLDIGLTSLYPHVDELHTMTSLSGFEALVQGVKVTTWGQPFYSGWGLTTDAHPPARRQ 618
Cdd:cd16436 120 RGGKDYGYlIDETLSLERRVLLVHDVSLPSLLKRAGGVVTVNSTSGFEALLHGKPVKVLGLPWYAGWGLTDDRHLAAFWV 199
|
250 260
....*....|....*....|...
gi 1960117148 619 R----KLPLPALVYLTLAVYPLY 637
Cdd:cd16436 200 AarlgNATLHYLFGATQINYNFY 222
|
|
| Capsule_synth |
pfam05159 |
Capsule polysaccharide biosynthesis protein; This family includes export proteins involved in ... |
41-319 |
2.66e-36 |
|
Capsule polysaccharide biosynthesis protein; This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS and LipB.
Pssm-ID: 282949 Cd Length: 310 Bit Score: 138.83 E-value: 2.66e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 41 AGWGQKANSRQIKQQ-AQALGLPYWQLEDGFIgyighparggKAVSLIADPVGIYYDARQPSQLEQLI-ATPCDA----- 113
Cdd:pfam05159 4 VLWGDRRSYHRIAAIaAAQHGVRFWVFEDGYL----------RPYSITLEKIGIYYDSNLPSDPEQLLlAATGLPepdap 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 114 ----------AMLARAEQLIHELVRLGVTKYNCYAGR-PASLSSCSATSLTAKDVAGLPAALAQRLLQDGRPRVLLV-DQ 181
Cdd:pfam05159 74 rpyrqdflpqATLDIAYYLINFINQHHFPKYNHHRIFnPLAEYAGSIRRRAAYYGEDREADKLIRLLSPKKRRIFLVpLQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 182 VAGDLSIP--GALASEADFIA-MVEAARRNHP-DARLLLRTHPDTRFGKK-RGVLARLRPS-----DVEIVADHCHPHAL 251
Cdd:pfam05159 154 VEDDSQVRihGPFGSVRSAILhMLESFAENAPaDSNIIIKTHPDDRGGIKyRRIIKGYATQlpgfkRRVLYIDDGNLPSL 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960117148 252 LNLVDAVYTVSSQLGFEALLLGKPVYCFGMPFYAGWGLTQDSKPCERRNV---------QVSLAQLVAAALICYPRY 319
Cdd:pfam05159 234 LDHVDGVVTVNSTAGFEALLHGKPVVTLGTAWYAGWGLTDQRHLAIFWTAprrpdrvlfGAYLLYLAAVTQINGNFY 310
|
|
| beta_Kdo_transferase |
cd16436 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining ... |
42-319 |
2.16e-35 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferases. They are part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.
Pssm-ID: 319744 Cd Length: 222 Bit Score: 133.44 E-value: 2.16e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 42 GWGQKANSRQIKQQAQALGLPYWQLEDGFIGYIGHPARGGKAVSLIADPVGIYYDARQPSQLEQLiatpcdaamlaraeq 121
Cdd:cd16436 3 GWGDRRPGQRAAAWALRAGVPVWRFEDGFLRSVSLGVLGDRPLSIVLDKLGIYYDASRPSRLEML--------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 122 lihelvrlgvtkyncyagrpaslsscsatsltakdvaglpaaLAQRLlqdgrprVLLVDQVAGDLSIPGALASEADFIAM 201
Cdd:cd16436 68 ------------------------------------------LKDKA-------FLVPLQVSGDVQVRLGGAVASSFLHV 98
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 202 VEAARRNHPDARLLLRTHPDTRFGKKRGVLARLRPSD--VEIVADHCHPHALLNLVDAVYTVSSQLGFEALLLGKPVYCF 279
Cdd:cd16436 99 LASFLEHNPDTPIIIKHHPDVRGGKDYGYLIDETLSLerRVLLVHDVSLPSLLKRAGGVVTVNSTSGFEALLHGKPVKVL 178
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1960117148 280 GMPFYAGWGLTQDSKPCERRN----VQVSLAQLVAAALICYPRY 319
Cdd:cd16436 179 GLPWYAGWGLTDDRHLAAFWVaarlGNATLHYLFGATQINYNFY 222
|
|
| Capsule_synth |
pfam05159 |
Capsule polysaccharide biosynthesis protein; This family includes export proteins involved in ... |
388-637 |
5.45e-25 |
|
Capsule polysaccharide biosynthesis protein; This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS and LipB.
Pssm-ID: 282949 Cd Length: 310 Bit Score: 106.09 E-value: 5.45e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 388 EQVLVWGSR---HPDLTSAIR--------VEDGFIRsrglgsnlcrPSSLSIDPVGIYFDSRTPSGLEQLLN-------- 448
Cdd:pfam05159 1 EAIVLWGDRrsyHRIAAIAAAqhgvrfwvFEDGYLR----------PYSITLEKIGIYYDSNLPSDPEQLLLaatglpep 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 449 ------YQQLTEQE-VQRGSALLDLLKQHGVSKYNVGT------------------------AQPFTPPADG--RTLVLV 495
Cdd:pfam05159 71 daprpyRQDFLPQAtLDIAYYLINFINQHHFPKYNHHRifnplaeyagsirrraayygedreADKLIRLLSPkkRRIFLV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 496 VGQVDGDASILTGSPTIRSNEQLLW----AVRAAKPEAHILYKPHPDVVAGNRAGTISAACLAEC-----VDSQVLDIGL 566
Cdd:pfam05159 151 PLQVEDDSQVRIHGPFGSVRSAILHmlesFAENAPADSNIIIKTHPDDRGGIKYRRIIKGYATQLpgfkrRVLYIDDGNL 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960117148 567 TSLYPHVDELHTMTSLSGFEALVQGVKVTTWGQPFYSGWGLTTDAHP------PARRQRKLPLPALVYLTLAVYPLY 637
Cdd:pfam05159 231 PSLLDHVDGVVTVNSTAGFEALLHGKPVVTLGTAWYAGWGLTDQRHLaifwtaPRRPDRVLFGAYLLYLAAVTQING 307
|
|
| beta_Kdo_transferase_KpsS_like |
cd16438 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a ... |
390-615 |
4.77e-11 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.
Pssm-ID: 319746 Cd Length: 254 Bit Score: 63.77 E-value: 4.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 390 VLVWGSRHPDLTSAIRVEDGFIRSRGLGSNLCRPSSLSIDPVGIYFDSRTPSGLEQLLNYQQLTEQEVQRgsallDLLKQ 469
Cdd:cd16438 1 VVVWNGSKLPQSVAAAAARRLGIPVLFFENGLLPGTTTLDPKGVNYANSVPRDPAFYRNYSIDQEPPLKA-----LVRRP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 470 HGVSKynvgtaqpfTPPADGRTL----VLVVGQVDGDASILTGSPTIRSNEQLLWAVRAA----KPEAHILYKPHPdvva 541
Cdd:cd16438 76 LRKKK---------KKQADPVELperyVFVPFQVPTDTQILLHSPWIKDMEQLYEVLVEAadrlNPDLKIVFKEHP---- 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1960117148 542 gNRAGTISAAcLAECVDSQVL---DIGLTSLYPHVDELHTMTSLSGFEALVQGVKVTTWGQPFYSGWGLTTDAHPPA 615
Cdd:cd16438 143 -SDPKSYDYK-ELYKKHPRVIfanGNDTQELIEGAEAVITINSTVGIEALLLGKPVITLGNAFYNIEGLVLHARSPQ 217
|
|
| beta_Kdo_transferase_KpsS_like |
cd16438 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a ... |
56-290 |
2.51e-09 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.
Pssm-ID: 319746 Cd Length: 254 Bit Score: 58.38 E-value: 2.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 56 AQALGLPYWQLEDGFIGYighparggkavSLIADPVGIYYDARQPSQLEQLIATPCDAAMLARAEQLIhelvrlgvtkyn 135
Cdd:cd16438 18 ARRLGIPVLFFENGLLPG-----------TTTLDPKGVNYANSVPRDPAFYRNYSIDQEPPLKALVRR------------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 136 cyagrpaslSSCSATSLTAKDVAgLPaalaqrllqdgrPRVLLVD-QVAGDLSIpgALAS------EADFIAMVEAARRN 208
Cdd:cd16438 75 ---------PLRKKKKKQADPVE-LP------------ERYVFVPfQVPTDTQI--LLHSpwikdmEQLYEVLVEAADRL 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 209 HPDARLLLRTHPdtRFGKKRGVLARLRPSDVEIVADHCHPHALLNLVDAVYTVSSQLGFEALLLGKPVYCFGMPFYAGWG 288
Cdd:cd16438 131 NPDLKIVFKEHP--SDPKSYDYKELYKKHPRVIFANGNDTQELIEGAEAVITINSTVGIEALLLGKPVITLGNAFYNIEG 208
|
..
gi 1960117148 289 LT 290
Cdd:cd16438 209 LV 210
|
|
| beta_Kdo_transferase_KpsS |
cd16441 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS; KpsS is a ... |
162-290 |
3.24e-06 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS; KpsS is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.
Pssm-ID: 319749 Cd Length: 307 Bit Score: 49.40 E-value: 3.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 162 AALAQRLLQDGRPRVLLVDQVAGDLSI----PGAlaSEADFIAMVEA--ARRNHPDARLLLRTHP-DTRFGKKRGVLARL 234
Cdd:cd16441 132 RALLRLLLESGGPYFLVPLQLDNDSQIrvhsPFG--SMEDFIEEVIAsfARHAPADTRLVIKHHPlDRGLRNYRRLIRRL 209
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 235 -RPSDVE---IVADHCHPHALLNLVDAVYTVSSQLGFEALLLGKPVYCFGMPFYAGWGLT 290
Cdd:cd16441 210 aRRLGVAgrvHYIHGGHLPTLLRHARGVVTVNSTVGLSALYHGKPVKVLGDAIYDIPGLT 269
|
|
| KpsS |
COG3562 |
Capsule polysaccharide modification protein KpsS [Cell wall/membrane/envelope biogenesis]; |
162-290 |
6.39e-06 |
|
Capsule polysaccharide modification protein KpsS [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442783 Cd Length: 421 Bit Score: 49.07 E-value: 6.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 162 AALAQRLLQDGRPRVLLVDQVAGDLSI----PGAlaSEADFIAMVEA--ARRNHPDARLLLRTHP-DT----------RF 224
Cdd:COG3562 213 RAALARLRAGGGPYFLVPLQLEHDSQIrahsPFA--SMEEFIEEVLAsfARHAPADAHLVIKHHPlDRglrnyrrlirRL 290
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1960117148 225 GKKRGVLARlrpsdVEIVADHcHPHALLNLVDAVYTVSSQLGFEALLLGKPVYCFGMPFYAGWGLT 290
Cdd:COG3562 291 ARRLGVADR-----VHYVHGG-HLPTLLRHARGVVTVNSTVGLSALWHGLPVKVLGRAVYDIPGLT 350
|
|
| Glycosyltransferase_GTB-type |
cd01635 |
glycosyltransferase family 1 and related proteins with GTB topology; Glycosyltransferases ... |
189-280 |
6.18e-03 |
|
glycosyltransferase family 1 and related proteins with GTB topology; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Pssm-ID: 340816 [Multi-domain] Cd Length: 235 Bit Score: 38.92 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1960117148 189 PGALASEADFIAMVEAARR---NHPDARLLLRTHPDTRFGKKRGVLARLRPSDVEIVADHCHP---HALLNLVDAVYTVS 262
Cdd:cd01635 116 VGRLVPEKGIDLLLEALALlkaRLPDLVLVLVGGGGEREEEEALAAALGLLERVVIIGGLVDDevlELLLAAADVFVLPS 195
|
90 100
....*....|....*....|...
gi 1960117148 263 SQLGF-----EALLLGKPVYCFG 280
Cdd:cd01635 196 RSEGFglvllEAMAAGKPVIATD 218
|
|
| |
