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Conserved domains on  [gi|1994460425|ref|WP_205257784|]
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DUF1416 domain-containing protein [Nakamurella flavida]

Protein Classification

DUF1416 domain-containing protein( domain architecture ID 10537660)

uncharacterized DUF1416 domain-containing protein, similar to Mycobacterium tuberculosis RC3118

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1416 pfam07210
Protein of unknown function (DUF1416); This family consists of several hypothetical bacterial ...
 2-97 2.53e-44

Protein of unknown function (DUF1416); This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.


:

Pssm-ID: 429351  Cd Length: 97  Bit Score: 138.56  E-value: 2.53e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994460425  2 CGAPEQTLDLPPGTNTVDQAVLQGKVLHGADPVGGAFVRLLDGTGEFTAEVVSSPAGDFRFYAAPGSWTVRALSRSGNGQ 81
Cdd:pfam07210  1 CGAPAQGATLPAGVDLEKETVIQGRVTRDGEPVGGAYVRLLDSTGEFTAEVVTSATGDFRFFAAPGTWTVRALSRGGNGD 80

                         90
                 ....*....|....*..
gi 1994460425 82 ASVTTAT-GVYSVDVVL 97
Cdd:pfam07210 81 ASVTAEGgGVHEVAVAV 97
 
Name Accession Description Interval E-value
DUF1416 pfam07210
Protein of unknown function (DUF1416); This family consists of several hypothetical bacterial ...
 2-97 2.53e-44

Protein of unknown function (DUF1416); This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.


Pssm-ID: 429351  Cd Length: 97  Bit Score: 138.56  E-value: 2.53e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994460425  2 CGAPEQTLDLPPGTNTVDQAVLQGKVLHGADPVGGAFVRLLDGTGEFTAEVVSSPAGDFRFYAAPGSWTVRALSRSGNGQ 81
Cdd:pfam07210  1 CGAPAQGATLPAGVDLEKETVIQGRVTRDGEPVGGAYVRLLDSTGEFTAEVVTSATGDFRFFAAPGTWTVRALSRGGNGD 80

                         90
                 ....*....|....*..
gi 1994460425 82 ASVTTAT-GVYSVDVVL 97
Cdd:pfam07210 81 ASVTAEGgGVHEVAVAV 97
 
Name Accession Description Interval E-value
DUF1416 pfam07210
Protein of unknown function (DUF1416); This family consists of several hypothetical bacterial ...
 2-97 2.53e-44

Protein of unknown function (DUF1416); This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.


Pssm-ID: 429351  Cd Length: 97  Bit Score: 138.56  E-value: 2.53e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1994460425  2 CGAPEQTLDLPPGTNTVDQAVLQGKVLHGADPVGGAFVRLLDGTGEFTAEVVSSPAGDFRFYAAPGSWTVRALSRSGNGQ 81
Cdd:pfam07210  1 CGAPAQGATLPAGVDLEKETVIQGRVTRDGEPVGGAYVRLLDSTGEFTAEVVTSATGDFRFFAAPGTWTVRALSRGGNGD 80

                         90
                 ....*....|....*..
gi 1994460425 82 ASVTTAT-GVYSVDVVL 97
Cdd:pfam07210 81 ASVTAEGgGVHEVAVAV 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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