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Conserved domains on  [gi|1997179869|ref|WP_205947120|]
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MULTISPECIES: toll/interleukin-1 receptor domain-containing protein [Pectobacterium]

Protein Classification

toll/interleukin-1 receptor domain-containing protein( domain architecture ID 10615567)

toll/interleukin-1 receptor (TIR) domain-containing protein assemble into complexes and may have scaffolding and/or enzymatic functions

CATH:  3.40.50.10140
Gene Ontology:  GO:0007165|GO:0005515
PubMed:  29395922|34868065

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
 133-229 1.52e-14

TIR domain; This is a family of Toll-like receptors.


:

Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 69.27  E-value: 1.52e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997179869 133 VFVSYRRDEaKQVALQLFDALSARLFDVFLDTHDIALGEDFQAMLWHRLCDSDVLVMLDTPTYFESRWTNAEFGRAL--- 209
Cdd:pfam13676   1 VFISYAGED-RAWAEWLADALEAAGYRVWLDRWDIRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAEWEAALadp 79

                          90       100
                  ....*....|....*....|..
gi 1997179869 210 --SKGIAVLRVGWPDATPSPRT 229
Cdd:pfam13676  80 egRKRLIPVRLECDLELPGLAG 101
 
Name Accession Description Interval E-value
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
 133-229 1.52e-14

TIR domain; This is a family of Toll-like receptors.


Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 69.27  E-value: 1.52e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997179869 133 VFVSYRRDEaKQVALQLFDALSARLFDVFLDTHDIALGEDFQAMLWHRLCDSDVLVMLDTPTYFESRWTNAEFGRAL--- 209
Cdd:pfam13676   1 VFISYAGED-RAWAEWLADALEAAGYRVWLDRWDIRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAEWEAALadp 79

                          90       100
                  ....*....|....*....|..
gi 1997179869 210 --SKGIAVLRVGWPDATPSPRT 229
Cdd:pfam13676  80 egRKRLIPVRLECDLELPGLAG 101
 
Name Accession Description Interval E-value
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
 133-229 1.52e-14

TIR domain; This is a family of Toll-like receptors.


Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 69.27  E-value: 1.52e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997179869 133 VFVSYRRDEaKQVALQLFDALSARLFDVFLDTHDIALGEDFQAMLWHRLCDSDVLVMLDTPTYFESRWTNAEFGRAL--- 209
Cdd:pfam13676   1 VFISYAGED-RAWAEWLADALEAAGYRVWLDRWDIRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAEWEAALadp 79

                          90       100
                  ....*....|....*....|..
gi 1997179869 210 --SKGIAVLRVGWPDATPSPRT 229
Cdd:pfam13676  80 egRKRLIPVRLECDLELPGLAG 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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