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Conserved domains on  [gi|1997424372|ref|WP_206075586|]
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outer membrane protein assembly factor BamC [Polynucleobacter aenigmaticus]

Protein Classification

outer membrane protein assembly factor BamC( domain architecture ID 10007196)

outer membrane protein assembly factor BamC is part of the beta-barrel assembly machinery (BAM), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 10-367 2.73e-130

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442546  Cd Length: 354  Bit Score: 377.77  E-value: 2.73e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372  10 KHCAALLILFAASLGLVGCKS---VTSNDTVDYKSAGavRGPNLSYPPDLITAQADRRYIVQD-GSATMSEYNaavkksV 85
Cdd:COG3317     1 KLSVRLVLLLLLVLLLAGCSSlqrYFRSGKVDYLSAP--KLPPLEVPPDLTAPSQDDRYDIPAgGAATGSEYD------I 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372  86 QTRKNVMTGIPGMRIARDGERRWLVVEKPAPELYPQIKDFWQENGFLLVIDSPSTGIMETDWAENRAKIAqDFIRSAIgg 165
Cdd:COG3317    73 RPPAQVLPLVDGVRIERSGDQRWLVVDASPEQLWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIP-DFIRRTL-- 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 166 aLDSLYDTGERDKYKTRLEVSKPGETEVYITQRGAIEKCTTDStgsciSTIWTARPNDPELEAAFLARLMERLGMTQEQA 245
Cdd:COG3317   150 -LDGLYSTGERDRFRTRVERGVGGTTEIYVSHRGMEEVGDQKD-----STVWQPRPADPRLEAEMLNRLMVYLGADEEQA 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 246 KAQVAAPlGPKTPKAKLVQEGVNTAHIEMAAGFDRAWRDTGLALDRSNFTVEDRNRANGVYYVRYVNPKDlGDTKGFFTN 325
Cdd:COG3317   224 AAALAAA-QVGGIRVQLGKDADGLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDPDD-GEKPGFWSR 301

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1997424372 326 LFSSKDDssLKAKKYLVVVKAAGDNSStVYVQDADGRPENTA 367
Cdd:COG3317   302 LFGSDPE--LKAGDYRVQVGDLGNRTS-VTVLDAKGKPLTSD 340
 
Name Accession Description Interval E-value
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 10-367 2.73e-130

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 377.77  E-value: 2.73e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372  10 KHCAALLILFAASLGLVGCKS---VTSNDTVDYKSAGavRGPNLSYPPDLITAQADRRYIVQD-GSATMSEYNaavkksV 85
Cdd:COG3317     1 KLSVRLVLLLLLVLLLAGCSSlqrYFRSGKVDYLSAP--KLPPLEVPPDLTAPSQDDRYDIPAgGAATGSEYD------I 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372  86 QTRKNVMTGIPGMRIARDGERRWLVVEKPAPELYPQIKDFWQENGFLLVIDSPSTGIMETDWAENRAKIAqDFIRSAIgg 165
Cdd:COG3317    73 RPPAQVLPLVDGVRIERSGDQRWLVVDASPEQLWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIP-DFIRRTL-- 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 166 aLDSLYDTGERDKYKTRLEVSKPGETEVYITQRGAIEKCTTDStgsciSTIWTARPNDPELEAAFLARLMERLGMTQEQA 245
Cdd:COG3317   150 -LDGLYSTGERDRFRTRVERGVGGTTEIYVSHRGMEEVGDQKD-----STVWQPRPADPRLEAEMLNRLMVYLGADEEQA 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 246 KAQVAAPlGPKTPKAKLVQEGVNTAHIEMAAGFDRAWRDTGLALDRSNFTVEDRNRANGVYYVRYVNPKDlGDTKGFFTN 325
Cdd:COG3317   224 AAALAAA-QVGGIRVQLGKDADGLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDPDD-GEKPGFWSR 301

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1997424372 326 LFSSKDDssLKAKKYLVVVKAAGDNSStVYVQDADGRPENTA 367
Cdd:COG3317   302 LFGSDPE--LKAGDYRVQVGDLGNRTS-VTVLDAKGKPLTSD 340
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 47-363 3.91e-42

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 149.38  E-value: 3.91e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372  47 GPNLSYPPDLITAQADRRYIVQDGsatmsEYNAAVKKSVQTR--KNVMTGIPGMRIARDGERRWLVVEKPAPELYPQIKD 124
Cdd:pfam06804   1 LAPLKVPAGLILPEQNGEYDIPAV-----ANQGAVGKQLDIRppLQVLPLIEGSRVEESGDSATLLFENSKDELWQQVND 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 125 FWQENGFLLVIDSPSTGIMETDWAENRAKiaqdfirsaIGGALDSLYDtgERDKYKTRLEVSKPGET-EVYITQRGAIEK 203
Cdd:pfam06804  76 FLAENNIPIAKRDDASGTLETDWITNQES---------LWNRSDEDVQ--LRQRYRFTISVKPHGRQaALSVSLLDLEEG 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 204 CTTDstgscistiWTARPND-PELEAAFLARLMERLGMTQEQAKAQVAAPLGpKTPKAKLVQEGVNTAHIEMAAGFDRAW 282
Cdd:pfam06804 145 DDVK---------EVTSPADkQRYEADMLNNVIAYLDQERRQAEAALANRQS-GGIDVQLGADDNGLPVLIVRAPYNVVW 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 283 RDTGLALDRSNFTVEDRNRANGVYYVRYVNPKDlgdtkGFFTNLFSskDDSSLKAKKYLVVVkAAGDNSSTVYVQDADGR 362
Cdd:pfam06804 215 DRLPLVLPKLGFTVEDRDRSQGTYFVKYKAPSS-----GFWSSLGG--DELDLDEGEYRLQL-GDLGNRTSITFLDAKGK 286


                  .
gi 1997424372 363 P 363
Cdd:pfam06804 287 P 287
PRK05297 PRK05297
phosphoribosylformylglycinamidine synthase; Provisional
 249-281 8.71e-03

phosphoribosylformylglycinamidine synthase; Provisional


Pssm-ID: 235394 [Multi-domain]  Cd Length: 1290  Bit Score: 38.24  E-value: 8.71e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1997424372  249 VAAPLGPKTPKAK---LVQEGVNtAHIEMAAGFDRA 281
Cdd:PRK05297  1025 IAAPFIATGARPKvaiLREQGVN-SHVEMAAAFDRA 1059
 
Name Accession Description Interval E-value
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 10-367 2.73e-130

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 377.77  E-value: 2.73e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372  10 KHCAALLILFAASLGLVGCKS---VTSNDTVDYKSAGavRGPNLSYPPDLITAQADRRYIVQD-GSATMSEYNaavkksV 85
Cdd:COG3317     1 KLSVRLVLLLLLVLLLAGCSSlqrYFRSGKVDYLSAP--KLPPLEVPPDLTAPSQDDRYDIPAgGAATGSEYD------I 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372  86 QTRKNVMTGIPGMRIARDGERRWLVVEKPAPELYPQIKDFWQENGFLLVIDSPSTGIMETDWAENRAKIAqDFIRSAIgg 165
Cdd:COG3317    73 RPPAQVLPLVDGVRIERSGDQRWLVVDASPEQLWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIP-DFIRRTL-- 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 166 aLDSLYDTGERDKYKTRLEVSKPGETEVYITQRGAIEKCTTDStgsciSTIWTARPNDPELEAAFLARLMERLGMTQEQA 245
Cdd:COG3317   150 -LDGLYSTGERDRFRTRVERGVGGTTEIYVSHRGMEEVGDQKD-----STVWQPRPADPRLEAEMLNRLMVYLGADEEQA 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 246 KAQVAAPlGPKTPKAKLVQEGVNTAHIEMAAGFDRAWRDTGLALDRSNFTVEDRNRANGVYYVRYVNPKDlGDTKGFFTN 325
Cdd:COG3317   224 AAALAAA-QVGGIRVQLGKDADGLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDPDD-GEKPGFWSR 301

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1997424372 326 LFSSKDDssLKAKKYLVVVKAAGDNSStVYVQDADGRPENTA 367
Cdd:COG3317   302 LFGSDPE--LKAGDYRVQVGDLGNRTS-VTVLDAKGKPLTSD 340
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 47-363 3.91e-42

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 149.38  E-value: 3.91e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372  47 GPNLSYPPDLITAQADRRYIVQDGsatmsEYNAAVKKSVQTR--KNVMTGIPGMRIARDGERRWLVVEKPAPELYPQIKD 124
Cdd:pfam06804   1 LAPLKVPAGLILPEQNGEYDIPAV-----ANQGAVGKQLDIRppLQVLPLIEGSRVEESGDSATLLFENSKDELWQQVND 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 125 FWQENGFLLVIDSPSTGIMETDWAENRAKiaqdfirsaIGGALDSLYDtgERDKYKTRLEVSKPGET-EVYITQRGAIEK 203
Cdd:pfam06804  76 FLAENNIPIAKRDDASGTLETDWITNQES---------LWNRSDEDVQ--LRQRYRFTISVKPHGRQaALSVSLLDLEEG 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 204 CTTDstgscistiWTARPND-PELEAAFLARLMERLGMTQEQAKAQVAAPLGpKTPKAKLVQEGVNTAHIEMAAGFDRAW 282
Cdd:pfam06804 145 DDVK---------EVTSPADkQRYEADMLNNVIAYLDQERRQAEAALANRQS-GGIDVQLGADDNGLPVLIVRAPYNVVW 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1997424372 283 RDTGLALDRSNFTVEDRNRANGVYYVRYVNPKDlgdtkGFFTNLFSskDDSSLKAKKYLVVVkAAGDNSSTVYVQDADGR 362
Cdd:pfam06804 215 DRLPLVLPKLGFTVEDRDRSQGTYFVKYKAPSS-----GFWSSLGG--DELDLDEGEYRLQL-GDLGNRTSITFLDAKGK 286


                  .
gi 1997424372 363 P 363
Cdd:pfam06804 287 P 287
PRK05297 PRK05297
phosphoribosylformylglycinamidine synthase; Provisional
 249-281 8.71e-03

phosphoribosylformylglycinamidine synthase; Provisional


Pssm-ID: 235394 [Multi-domain]  Cd Length: 1290  Bit Score: 38.24  E-value: 8.71e-03
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1997424372  249 VAAPLGPKTPKAK---LVQEGVNtAHIEMAAGFDRA 281
Cdd:PRK05297  1025 IAAPFIATGARPKvaiLREQGVN-SHVEMAAAFDRA 1059
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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