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Conserved domains on  [gi|1998274644|ref|WP_206544105|]
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MULTISPECIES: proline racemase family protein [Nitratireductor]

Protein Classification

proline racemase family protein( domain architecture ID 11467630)

proline racemase family protein similar to trans-3-hydroxy-L-proline (t3LHyp) dehydratase (aka 4-hydroxyproline 2-epimerase) that catalyzes the dehydration of t3LHyp to delta(1)-pyrroline-2-carboxylate (Pyr2C), and the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PrdF COG3938
Proline racemase/hydroxyproline epimerase [Amino acid transport and metabolism];
1-336 0e+00

Proline racemase/hydroxyproline epimerase [Amino acid transport and metabolism];


:

Pssm-ID: 443139  Cd Length: 335  Bit Score: 517.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644   1 MRSSKTVHVISAHAEGEVGDVIVGGVTPPPGDTLWEQSRWIARD-ETLRNFVLNEPRGGVFRHVNLLVPPKDPRADAAFI 79
Cdd:COG3938     1 MRSSRTITTIDAHTEGEPTRVVTGGVPPLPGNTMLEKRRYFAENyDWLRRLLMFEPRGHADMSGALLVPPTRPDADFGVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644  80 IMEPEDTPPMSGSNSICVSTVLLDGGILPMTEPVTELVLEAPGGLVRVRAECANGKAQRIFVQNLPSFAARLDAPLEVEG 159
Cdd:COG3938    81 FMETSGYLPMCGHGTIGVATVLLETGLVPMTEPVTEVVLDTPAGLVRARAEVEDGKVESVTFENVPSFVYALDVEVEVPG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 160 LGTLSVDTAYGGDSFVFVDAQALGFSLKPDEAHDLARLGVKITAAANEALGFHHPENPDWRHISFCLFAGPVERdaDGLR 239
Cdd:COG3938   161 LGTVTVDIAYGGNFYAIVDAQQLGLDLEPENARELIRLGLEIRDAANEQLEVVHPENPDINGVSHVEFTGPPTD--PDAD 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 240 AGAAVAIRPGKIDRSPTGTALSARMAVLAARGQMGPQDRLTAVSLIGSTFTGRILGETRVGDVPAILPEISGRGWVTGIH 319
Cdd:COG3938   239 ARNAVVFGPGAIDRSPCGTGTSARMALLHARGELKVGETFVHESIIGSRFTGRILEETTVGGYPAIIPEITGRAWITGFN 318

                         330
                  ....*....|....*..
gi 1998274644 320 QHMLDPDDPWPGGYRLS 336
Cdd:COG3938   319 QFVLDPDDPLPEGFLLR 335
 
Name Accession Description Interval E-value
PrdF COG3938
Proline racemase/hydroxyproline epimerase [Amino acid transport and metabolism];
1-336 0e+00

Proline racemase/hydroxyproline epimerase [Amino acid transport and metabolism];


Pssm-ID: 443139  Cd Length: 335  Bit Score: 517.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644   1 MRSSKTVHVISAHAEGEVGDVIVGGVTPPPGDTLWEQSRWIARD-ETLRNFVLNEPRGGVFRHVNLLVPPKDPRADAAFI 79
Cdd:COG3938     1 MRSSRTITTIDAHTEGEPTRVVTGGVPPLPGNTMLEKRRYFAENyDWLRRLLMFEPRGHADMSGALLVPPTRPDADFGVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644  80 IMEPEDTPPMSGSNSICVSTVLLDGGILPMTEPVTELVLEAPGGLVRVRAECANGKAQRIFVQNLPSFAARLDAPLEVEG 159
Cdd:COG3938    81 FMETSGYLPMCGHGTIGVATVLLETGLVPMTEPVTEVVLDTPAGLVRARAEVEDGKVESVTFENVPSFVYALDVEVEVPG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 160 LGTLSVDTAYGGDSFVFVDAQALGFSLKPDEAHDLARLGVKITAAANEALGFHHPENPDWRHISFCLFAGPVERdaDGLR 239
Cdd:COG3938   161 LGTVTVDIAYGGNFYAIVDAQQLGLDLEPENARELIRLGLEIRDAANEQLEVVHPENPDINGVSHVEFTGPPTD--PDAD 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 240 AGAAVAIRPGKIDRSPTGTALSARMAVLAARGQMGPQDRLTAVSLIGSTFTGRILGETRVGDVPAILPEISGRGWVTGIH 319
Cdd:COG3938   239 ARNAVVFGPGAIDRSPCGTGTSARMALLHARGELKVGETFVHESIIGSRFTGRILEETTVGGYPAIIPEITGRAWITGFN 318

                         330
                  ....*....|....*..
gi 1998274644 320 QHMLDPDDPWPGGYRLS 336
Cdd:COG3938   319 QFVLDPDDPLPEGFLLR 335
Pro_racemase pfam05544
Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which ...
 9-334 8.02e-174

Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which catalyze the interconversion of L- and D-proline in bacteria. This family also contains several similar eukaryotic proteins including Swiss:Q9NCP4 a sequence with B-cell mitogenic properties which has been characterized as a co-factor-independent proline racemase.


Pssm-ID: 398923  Cd Length: 325  Bit Score: 485.26  E-value: 8.02e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644   9 VISAHAEGEVGDVIVGGVTPPPGDTLWEQSRWIARD-ETLRNFVLNEPRGGVFRHVNLLVPPKDPRADAAFIIMEPEDTP 87
Cdd:pfam05544   1 VVDSHTEGEPGRVVVGGVPPLPGATMAEKRRYFARDhDHLRRFLMFEPRGHDMMSGALLVPPKRPDADAGVIFMEPSGYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644  88 PMSGSNSICVSTVLLDGGILPMTEPVTELVLEAPGGLVRVRAECANGKAQRIFVQNLPSFAARLDAPLEVEGLGTLSVDT 167
Cdd:pfam05544  81 PMCGHNTIGVVTVLLETGIVPPQEPETRLNLETPAGLVEARAECRDGKVERVSLRNVPSFVYALDVEVEVPGLGRVRVDI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 168 AYGGDSFVFVDAQALGFSLKPDEAHDLARLGVKITAAANEALGFHHPENPDWRHISFCLFAGPVERDADglRAGAAVAIR 247
Cdd:pfam05544 161 AYGGNFYAIVDAEQLGFDIEPAEARELVAAGEKIRDALNEQLKVVHPENPDIRGVSHVQLTGPPTRAEA--HARNAVIIG 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 248 PGKIDRSPTGTALSARMAVLAARGQMGPQDRLTAVSLIGSTFTGRILGETRVGDVPAILPEISGRGWVTGIHQHMLDPDD 327
Cdd:pfam05544 239 PGAIDRSPCGTGTSARMAQLHAKGKLKVGETFVHESIIGSEFEGRVEGETEVGGRPAIVPSISGRAWITGTNQLLLDPSD 318


                  ....*..
gi 1998274644 328 PWPGGYR 334
Cdd:pfam05544 319 PFAHGFR 325
PRK13969 PRK13969
proline racemase; Provisional
 1-335 1.48e-80

proline racemase; Provisional


Pssm-ID: 184427 [Multi-domain]  Cd Length: 334  Bit Score: 248.62  E-value: 1.48e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644   1 MRSSKTVHVISAHAEGEVGDVIVGGVTPPPGDTLWEQSRWIARD-ETLRNFVLNEPRGGVFRHVNLLVPPKDPRADAAFI 79
Cdd:PRK13969    1 MRFSKSIQTIDSHTMGEPTRIVVGGLPKIPGKTMAEKKEYLEENnDSLRTALMSEPRGHNDMFGSIYTEPADETADFGII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644  80 IMEPEDTPPMSGSNSICVSTVLLDGGILPMTEPVTELVLEAPGGLVRVRAECANGKAQRIFVQNLPSFAARLDAPLEVEG 159
Cdd:PRK13969   81 FMDGGGYLNMCGHGSIGAATCAVETGIVKVEEPYTHIKLEAPAGMINARVKVEDGKAKEVSIVNVPAFLYKKDVEIDVPD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 160 LGTLSVDTAYGGDSFVFVDAQALGFSLKPDEAHDLARLGVKITAAANEALGFHHPENPDWRHISFCLFAGPVERDADGLR 239
Cdd:PRK13969  161 YGKVTLDISFGGSFFAIVDAEQLGIKISPANSQKLNDLGMKIRHAVNEQIEIKHPVLEHIKTVDLVEIYDEAKHPDADYK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 240 agAAVAIRPGKIDRSPTGTALSARMAVLAARGQMGPQDRLTAVSLIGSTFTGRILGETRVGDVPAILPEISGRGWVTGIH 319
Cdd:PRK13969  241 --NVVIFGQGQVDRSPCGTGTSAKMATLYAKGKLKVGEEFVYESIIGTKFKGKILEETKVGEYDAIIPEITGSAYITGFN 318

                         330
                  ....*....|....*.
gi 1998274644 320 QHMLDPDDPWPGGYRL 335
Cdd:PRK13969  319 QFVIDEEDPVKYGFVL 334
 
Name Accession Description Interval E-value
PrdF COG3938
Proline racemase/hydroxyproline epimerase [Amino acid transport and metabolism];
1-336 0e+00

Proline racemase/hydroxyproline epimerase [Amino acid transport and metabolism];


Pssm-ID: 443139  Cd Length: 335  Bit Score: 517.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644   1 MRSSKTVHVISAHAEGEVGDVIVGGVTPPPGDTLWEQSRWIARD-ETLRNFVLNEPRGGVFRHVNLLVPPKDPRADAAFI 79
Cdd:COG3938     1 MRSSRTITTIDAHTEGEPTRVVTGGVPPLPGNTMLEKRRYFAENyDWLRRLLMFEPRGHADMSGALLVPPTRPDADFGVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644  80 IMEPEDTPPMSGSNSICVSTVLLDGGILPMTEPVTELVLEAPGGLVRVRAECANGKAQRIFVQNLPSFAARLDAPLEVEG 159
Cdd:COG3938    81 FMETSGYLPMCGHGTIGVATVLLETGLVPMTEPVTEVVLDTPAGLVRARAEVEDGKVESVTFENVPSFVYALDVEVEVPG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 160 LGTLSVDTAYGGDSFVFVDAQALGFSLKPDEAHDLARLGVKITAAANEALGFHHPENPDWRHISFCLFAGPVERdaDGLR 239
Cdd:COG3938   161 LGTVTVDIAYGGNFYAIVDAQQLGLDLEPENARELIRLGLEIRDAANEQLEVVHPENPDINGVSHVEFTGPPTD--PDAD 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 240 AGAAVAIRPGKIDRSPTGTALSARMAVLAARGQMGPQDRLTAVSLIGSTFTGRILGETRVGDVPAILPEISGRGWVTGIH 319
Cdd:COG3938   239 ARNAVVFGPGAIDRSPCGTGTSARMALLHARGELKVGETFVHESIIGSRFTGRILEETTVGGYPAIIPEITGRAWITGFN 318

                         330
                  ....*....|....*..
gi 1998274644 320 QHMLDPDDPWPGGYRLS 336
Cdd:COG3938   319 QFVLDPDDPLPEGFLLR 335
Pro_racemase pfam05544
Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which ...
 9-334 8.02e-174

Proline racemase; This family consists of proline racemase (EC 5.1.1.4) proteins which catalyze the interconversion of L- and D-proline in bacteria. This family also contains several similar eukaryotic proteins including Swiss:Q9NCP4 a sequence with B-cell mitogenic properties which has been characterized as a co-factor-independent proline racemase.


Pssm-ID: 398923  Cd Length: 325  Bit Score: 485.26  E-value: 8.02e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644   9 VISAHAEGEVGDVIVGGVTPPPGDTLWEQSRWIARD-ETLRNFVLNEPRGGVFRHVNLLVPPKDPRADAAFIIMEPEDTP 87
Cdd:pfam05544   1 VVDSHTEGEPGRVVVGGVPPLPGATMAEKRRYFARDhDHLRRFLMFEPRGHDMMSGALLVPPKRPDADAGVIFMEPSGYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644  88 PMSGSNSICVSTVLLDGGILPMTEPVTELVLEAPGGLVRVRAECANGKAQRIFVQNLPSFAARLDAPLEVEGLGTLSVDT 167
Cdd:pfam05544  81 PMCGHNTIGVVTVLLETGIVPPQEPETRLNLETPAGLVEARAECRDGKVERVSLRNVPSFVYALDVEVEVPGLGRVRVDI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 168 AYGGDSFVFVDAQALGFSLKPDEAHDLARLGVKITAAANEALGFHHPENPDWRHISFCLFAGPVERDADglRAGAAVAIR 247
Cdd:pfam05544 161 AYGGNFYAIVDAEQLGFDIEPAEARELVAAGEKIRDALNEQLKVVHPENPDIRGVSHVQLTGPPTRAEA--HARNAVIIG 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 248 PGKIDRSPTGTALSARMAVLAARGQMGPQDRLTAVSLIGSTFTGRILGETRVGDVPAILPEISGRGWVTGIHQHMLDPDD 327
Cdd:pfam05544 239 PGAIDRSPCGTGTSARMAQLHAKGKLKVGETFVHESIIGSEFEGRVEGETEVGGRPAIVPSISGRAWITGTNQLLLDPSD 318


                  ....*..
gi 1998274644 328 PWPGGYR 334
Cdd:pfam05544 319 PFAHGFR 325
PRK13969 PRK13969
proline racemase; Provisional
 1-335 1.48e-80

proline racemase; Provisional


Pssm-ID: 184427 [Multi-domain]  Cd Length: 334  Bit Score: 248.62  E-value: 1.48e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644   1 MRSSKTVHVISAHAEGEVGDVIVGGVTPPPGDTLWEQSRWIARD-ETLRNFVLNEPRGGVFRHVNLLVPPKDPRADAAFI 79
Cdd:PRK13969    1 MRFSKSIQTIDSHTMGEPTRIVVGGLPKIPGKTMAEKKEYLEENnDSLRTALMSEPRGHNDMFGSIYTEPADETADFGII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644  80 IMEPEDTPPMSGSNSICVSTVLLDGGILPMTEPVTELVLEAPGGLVRVRAECANGKAQRIFVQNLPSFAARLDAPLEVEG 159
Cdd:PRK13969   81 FMDGGGYLNMCGHGSIGAATCAVETGIVKVEEPYTHIKLEAPAGMINARVKVEDGKAKEVSIVNVPAFLYKKDVEIDVPD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 160 LGTLSVDTAYGGDSFVFVDAQALGFSLKPDEAHDLARLGVKITAAANEALGFHHPENPDWRHISFCLFAGPVERDADGLR 239
Cdd:PRK13969  161 YGKVTLDISFGGSFFAIVDAEQLGIKISPANSQKLNDLGMKIRHAVNEQIEIKHPVLEHIKTVDLVEIYDEAKHPDADYK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 240 agAAVAIRPGKIDRSPTGTALSARMAVLAARGQMGPQDRLTAVSLIGSTFTGRILGETRVGDVPAILPEISGRGWVTGIH 319
Cdd:PRK13969  241 --NVVIFGQGQVDRSPCGTGTSAKMATLYAKGKLKVGEEFVYESIIGTKFKGKILEETKVGEYDAIIPEITGSAYITGFN 318

                         330
                  ....*....|....*.
gi 1998274644 320 QHMLDPDDPWPGGYRL 335
Cdd:PRK13969  319 QFVIDEEDPVKYGFVL 334
PRK13971 PRK13971
4-hydroxyproline epimerase;
10-335 2.33e-65

4-hydroxyproline epimerase;


Pssm-ID: 184428  Cd Length: 333  Bit Score: 209.42  E-value: 2.33e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644  10 ISAHAEGEVGDVIVGGVTPPPGDTLWEQsrwiaRDETLRNF------VLNEPRGGVFRHVNLLVPPKDPRADAAFIIMEP 83
Cdd:PRK13971    9 IDAHTCGNPVRLVAGGGPLLQGATMSEK-----RAHFLREYdwirtgLMFEPRGHDMMSGSILYPPTRPDCDFAILFIET 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644  84 EDTPPMSGSNSICVSTVLLDGGILPMTEPVTeLVLEAPGGLVRVRAECANGKAQRIFVQNLPSFAARLDAPLEVEGLGTL 163
Cdd:PRK13971   84 SGCLPMCGHGTIGTVTAAIEEGLVTPKTPGK-LRLDTPAGLVDIEYEQDGEKVESVRLTNVPSYLAAEDLEVEIPGLGPL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 164 SVDTAYGGDSFVFVDAQAlGFS-LKPDEAHDLARLGVKITAAANEALGFHHPENPDWRHISFCLFAG-PVERDADGlraG 241
Cdd:PRK13971  163 KVDVAYGGNFYAIVEPQE-NFPgLDHYSASDILRWSPVLRQALNEKYEFVHPEDPRIRGVSHVLWTGkPISPGADA---R 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 242 AAVAIRPGKIDRSPTGTALSARMAVLAARGQMGPQDRLTAVSLIGSTFTGRILGETRVGDVPAILPEISGRGWVTGIHQH 321
Cdd:PRK13971  239 NAVFYGDKAIDRSPCGTGTSARMAQLAAKGKLKVGDEFVHESIIGSLFEGRVEAAATVGGRPAILPSIEGWARVTGHNTI 318

                         330
                  ....*....|....
gi 1998274644 322 MLDPDDPWPGGYRL 335
Cdd:PRK13971  319 FVDDRDPYAHGFQV 332
PRK13970 PRK13970
4-hydroxyproline epimerase;
5-332 7.07e-19

4-hydroxyproline epimerase;


Pssm-ID: 172473  Cd Length: 311  Bit Score: 85.84  E-value: 7.07e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644   5 KTVHVISAHAEGEVGDVIVGGVTPPPGDTLWEQSRWIARD-ETLRNFVLNEPRGGVFRHVNLLVPPKDPRADAAFIIMEP 83
Cdd:PRK13970    3 KRIQIIDSHTGGEPTRLVVSGFPSLGGGTMAERRDVLAREhDRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644  84 EDTPPMSGSNSI-CVSTVLLDGGILPMTEPVtelvlEAPGGLVrvraECANGKAQRIFVQNLPSFAARLDAPLEVEGLGT 162
Cdd:PRK13970   83 SGYLGMCGHGTIgVVRTLHHMGRIGPGVHRI-----ETPVGTV----EATLHDDLSVSVRNVLAYRHAKDVVVDVPGYGP 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 163 LSVDTAYGGDSFVFVDAQalGFSLKPDEAHDLARLGVKITAAANEAlGFHHPENPDWRHISfcLFAGPVERDAdglragA 242
Cdd:PRK13970  154 VKGDIAWGGNWFFLISDH--GQRVAGDNVAALTAYASAVRAGLERA-GITGANGGEIDHIE--LFADDPEHDS------R 222

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998274644 243 AVAIRPG-KIDRSPTGTALSARMAVLAARGQMGPQDRLTAVSLIGSTFTGRIlgETRVGdvpAILPEISGRGWVTGIHQH 321
Cdd:PRK13970  223 SFVLCPGhAYDRSPCGTGTSAKLACLAADGKLAPGVVWRQASVIGSVFSASY--AAAEG---GIVPTIRGSAHLSAEATL 297

                         330
                  ....*....|.
gi 1998274644 322 MLDPDDPWPGG 332
Cdd:PRK13970  298 LIEDDDPFGWG 308
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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