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Conserved domains on  [gi|1998276600|ref|WP_206546056|]
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MULTISPECIES: YqjD family protein [Alphaproteobacteria]

Protein Classification

DUF883 family protein( domain architecture ID 10008628)

DUF883 family protein similar to Escherichia coli YqjD, a membrane-anchored ribosome-binding protein that inhibits growth in stationary phase

Gene Ontology:  GO:0043022|GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 8-112 3.60e-17

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


:

Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 70.74  E-value: 3.60e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998276600   8 SARTEKNDEVTTGDLEKDIQQLRSDMAQLISHLKDMGGQSGEAARKAAGERIEQLRGQGEAAFNSVKDSSQELEKELART 87
Cdd:COG4575     3 NTKTTTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDY 82

                          90       100
                  ....*....|....*....|....*
gi 1998276600  88 VRERPFTSLALAVGAGFLLALATRR 112
Cdd:COG4575    83 VHENPWQSVGIAAGVGLLLGLLLAR 107
 
Name Accession Description Interval E-value
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 8-112 3.60e-17

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 70.74  E-value: 3.60e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998276600   8 SARTEKNDEVTTGDLEKDIQQLRSDMAQLISHLKDMGGQSGEAARKAAGERIEQLRGQGEAAFNSVKDSSQELEKELART 87
Cdd:COG4575     3 NTKTTTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDY 82

                          90       100
                  ....*....|....*....|....*
gi 1998276600  88 VRERPFTSLALAVGAGFLLALATRR 112
Cdd:COG4575    83 VHENPWQSVGIAAGVGLLLGLLLAR 107
 
Name Accession Description Interval E-value
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 8-112 3.60e-17

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 70.74  E-value: 3.60e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998276600   8 SARTEKNDEVTTGDLEKDIQQLRSDMAQLISHLKDMGGQSGEAARKAAGERIEQLRGQGEAAFNSVKDSSQELEKELART 87
Cdd:COG4575     3 NTKTTTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDY 82

                          90       100
                  ....*....|....*....|....*
gi 1998276600  88 VRERPFTSLALAVGAGFLLALATRR 112
Cdd:COG4575    83 VHENPWQSVGIAAGVGLLLGLLLAR 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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