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Conserved domains on  [gi|1998276795|ref|WP_206546251|]
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MULTISPECIES: transposase, partial [Nitratireductor]

Protein Classification

transposase family protein( domain architecture ID 1750073)

transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0003677|GO:0006313
PubMed:  21439812

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS5_3 super family cl41332
IS5 family transposase;
1-64 4.68e-20

IS5 family transposase;


The actual alignment was detected with superfamily member NF033580:

Pssm-ID: 468097 [Multi-domain]  Cd Length: 257  Bit Score: 79.54  E-value: 4.68e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1998276795   1 VPVIPGRSNRKRaIRYDTRRYKSRHLIENAFCRLKDFRRVATRYDKLARNFLSAVALATLVAFW 64
Cdd:NF033580  195 VPVIPRRRNRLR-PAYDFRLYKKRWVVERTFAWLKRFRRLATRYEKLARNFLAFVHLACIRIWL 257
 
Name Accession Description Interval E-value
transpos_IS5_3 NF033580
IS5 family transposase;
1-64 4.68e-20

IS5 family transposase;


Pssm-ID: 468097 [Multi-domain]  Cd Length: 257  Bit Score: 79.54  E-value: 4.68e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1998276795   1 VPVIPGRSNRKRaIRYDTRRYKSRHLIENAFCRLKDFRRVATRYDKLARNFLSAVALATLVAFW 64
Cdd:NF033580  195 VPVIPRRRNRLR-PAYDFRLYKKRWVVERTFAWLKRFRRLATRYEKLARNFLAFVHLACIRIWL 257
DDE_Tnp_1_2 pfam13586
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. ...
 9-61 1.34e-04

Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.


Pssm-ID: 463928 [Multi-domain]  Cd Length: 90  Bit Score: 36.24  E-value: 1.34e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1998276795  9 NRKRAIRYDTRRYKSRHLIENAFCRLKDFRRVATRYDKLARNFLSAVALATLV 61
Cdd:pfam13586 34 NKAQEKKQAREDEIARNVIEGKFGWFKRRRSLAKRYEKLASTFEGAIALTFLV 86
 
Name Accession Description Interval E-value
transpos_IS5_3 NF033580
IS5 family transposase;
1-64 4.68e-20

IS5 family transposase;


Pssm-ID: 468097 [Multi-domain]  Cd Length: 257  Bit Score: 79.54  E-value: 4.68e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1998276795   1 VPVIPGRSNRKRaIRYDTRRYKSRHLIENAFCRLKDFRRVATRYDKLARNFLSAVALATLVAFW 64
Cdd:NF033580  195 VPVIPRRRNRLR-PAYDFRLYKKRWVVERTFAWLKRFRRLATRYEKLARNFLAFVHLACIRIWL 257
DDE_Tnp_1_2 pfam13586
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. ...
 9-61 1.34e-04

Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.


Pssm-ID: 463928 [Multi-domain]  Cd Length: 90  Bit Score: 36.24  E-value: 1.34e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1998276795  9 NRKRAIRYDTRRYKSRHLIENAFCRLKDFRRVATRYDKLARNFLSAVALATLV 61
Cdd:pfam13586 34 NKAQEKKQAREDEIARNVIEGKFGWFKRRRSLAKRYEKLASTFEGAIALTFLV 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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