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Conserved domains on  [gi|2007922432|ref|WP_207590181|]
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sulfate ABC transporter permease subunit CysW [Rhizobium sp. ZX09]

Protein Classification

sulfate ABC transporter permease( domain architecture ID 10790587)

sulfate ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter that is involved in the transport of sulfate

Gene Ontology:  GO:0015419|GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 5-283 3.50e-170

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 443356  Cd Length: 281  Bit Score: 472.29  E-value: 3.50e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432   5 SSHRKPPRVGDAPLVRRCLIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAF 84
Cdd:COG4208     3 SAARARSATTEPPWVRWLLIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  85 GVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVAR 164
Cdd:COG4208    83 GVAAAWAITRFEFRGKRLLITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVAR 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 165 ELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHIELLY 244
Cdd:COG4208   163 ELIPLMQEQGTDEEEAALTLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILY 242

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2007922432 245 HDYQTAGAFAAASILATLAVVTIIAKVALERRGAGRGRK 283
Cdd:COG4208   243 NEYNFVAAFAVASLLALLALVTLVLKTLLEWRTARRLAA 281
 
Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 5-283 3.50e-170

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443356  Cd Length: 281  Bit Score: 472.29  E-value: 3.50e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432   5 SSHRKPPRVGDAPLVRRCLIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAF 84
Cdd:COG4208     3 SAARARSATTEPPWVRWLLIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  85 GVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVAR 164
Cdd:COG4208    83 GVAAAWAITRFEFRGKRLLITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVAR 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 165 ELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHIELLY 244
Cdd:COG4208   163 ELIPLMQEQGTDEEEAALTLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILY 242

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2007922432 245 HDYQTAGAFAAASILATLAVVTIIAKVALERRGAGRGRK 283
Cdd:COG4208   243 NEYNFVAAFAVASLLALLALVTLVLKTLLEWRTARRLAA 281
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 19-276 2.26e-125

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 358.24  E-value: 2.26e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  19 VRRCLIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFP 98
Cdd:TIGR02140   1 VRYLLISLALGLLFLLLLLPLALIFQEAFEKGFGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  99 GRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVARELIPLMQAQGRDLE 178
Cdd:TIGR02140  81 GKRLLLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 179 EAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHIELLYHDYQTAGAFAAASI 258
Cdd:TIGR02140 161 EAALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSYAAFAAASL 240

                         250
                  ....*....|....*...
gi 2007922432 259 LATLAVVTIIAKVALERR 276
Cdd:TIGR02140 241 LALLALVTLVLKAILERR 258
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
23-276 3.64e-105

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 307.83  E-value: 3.64e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  23 LIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRF 102
Cdd:PRK11602   22 LIGIGMLVSAFILVVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQL 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 103 LLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVARELIPLMQAQGRDLEEAAT 182
Cdd:PRK11602  102 LLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAI 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 183 SLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHIELLYHDYQTAGAFAAASILATL 262
Cdd:PRK11602  182 LLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLM 261

                         250
                  ....*....|....
gi 2007922432 263 AVVTIIAKVALERR 276
Cdd:PRK11602  262 AIITLFLKSMLQWR 275
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 67-264 9.41e-22

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 90.03  E-value: 9.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  67 IMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGpfldahdIKILFA 146
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG-------ILPGLG 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 147 LPGIVIASMFVtAPFVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVS 226
Cdd:cd06261    74 LPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2007922432 227 GNIRGQTNTLPLHIELLYHDYQTAGAFAAASILATLAV 264
Cdd:cd06261   153 GGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 70-236 4.17e-15

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 71.81  E-value: 4.17e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  70 TVLTALIAVPVNTAFGVAaawsitkfDFPGRRFLLVLIEIPFSISPIVAGvayLFVYGLQGLFGPFldaHDIKILFALPG 149
Cdd:NF038017    9 TLIAALIGIPLGALLALR--------RFPGRRLVISLLNTLMGLPPVVVG---LIVYLLLSRSGPL---GFLGLLYTPTA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 150 IVIASMFVTAPFVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVtLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNI 229
Cdd:NF038017   75 MIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGNI 153


                  ....*..
gi 2007922432 230 RGQTNTL 236
Cdd:NF038017  154 RGYTRVL 160
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 86-276 1.41e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 50.76  E-value: 1.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  86 VAAAWSITKFDFPGRRFLLVLIEIPFSIsPIVAGVAYLFVYGLQGLFGpfldahdikilFALPGIVIASMFVTAPFVARE 165
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQAL-PSFVLAILLVVIAILSILG-----------HGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 166 LIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVsGNIRGQTNTLPLHIELLYH 245
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL-GSWPGLGLLLIEAILGYDY 149

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2007922432 246 DYQTAGAFAAASILATLAVVTIIAKVALERR 276
Cdd:pfam00528 150 PEIQGPVLAAALILLLLNLLVDILQRLLDPR 180
 
Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 5-283 3.50e-170

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443356  Cd Length: 281  Bit Score: 472.29  E-value: 3.50e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432   5 SSHRKPPRVGDAPLVRRCLIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAF 84
Cdd:COG4208     3 SAARARSATTEPPWVRWLLIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  85 GVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVAR 164
Cdd:COG4208    83 GVAAAWAITRFEFRGKRLLITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVAR 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 165 ELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHIELLY 244
Cdd:COG4208   163 ELIPLMQEQGTDEEEAALTLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILY 242

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2007922432 245 HDYQTAGAFAAASILATLAVVTIIAKVALERRGAGRGRK 283
Cdd:COG4208   243 NEYNFVAAFAVASLLALLALVTLVLKTLLEWRTARRLAA 281
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 19-276 2.26e-125

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 358.24  E-value: 2.26e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  19 VRRCLIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFP 98
Cdd:TIGR02140   1 VRYLLISLALGLLFLLLLLPLALIFQEAFEKGFGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  99 GRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVARELIPLMQAQGRDLE 178
Cdd:TIGR02140  81 GKRLLLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 179 EAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHIELLYHDYQTAGAFAAASI 258
Cdd:TIGR02140 161 EAALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSYAAFAAASL 240

                         250
                  ....*....|....*...
gi 2007922432 259 LATLAVVTIIAKVALERR 276
Cdd:TIGR02140 241 LALLALVTLVLKAILERR 258
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
23-276 3.64e-105

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 307.83  E-value: 3.64e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  23 LIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRF 102
Cdd:PRK11602   22 LIGIGMLVSAFILVVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQL 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 103 LLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVARELIPLMQAQGRDLEEAAT 182
Cdd:PRK11602  102 LLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAI 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 183 SLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHIELLYHDYQTAGAFAAASILATL 262
Cdd:PRK11602  182 LLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLM 261

                         250
                  ....*....|....
gi 2007922432 263 AVVTIIAKVALERR 276
Cdd:PRK11602  262 AIITLFLKSMLQWR 275
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 23-276 4.02e-94

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 279.24  E-value: 4.02e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  23 LIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRF 102
Cdd:TIGR00969  18 SLGIALLYVFLILILPVAALFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 103 LLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVARELIPLMQAQGRDLEEAAT 182
Cdd:TIGR00969  98 LDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAA 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 183 SLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHIELLYHDYQTAGAFAAASILATL 262
Cdd:TIGR00969 178 TLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLTLPLLIEERLEQYDYPGAYVIAAVLLLV 257

                         250
                  ....*....|....
gi 2007922432 263 AVVTIIAKVALERR 276
Cdd:TIGR00969 258 SLVTLFLINALQAR 271
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 23-268 1.39e-69

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 216.54  E-value: 1.39e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  23 LIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRF 102
Cdd:COG0555    12 TLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 103 LLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVARELIPLMQAQGRDLEEAAT 182
Cdd:COG0555    92 VDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAA 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 183 SLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHI--ELLYHDYQTAGAFAAASILA 260
Cdd:COG0555   172 TLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIylKLEEGDYAGATAIALVLLLI 251


                  ....*...
gi 2007922432 261 TLAVVTII 268
Cdd:COG0555   252 SFLLLLLI 259
cysT CHL00187
sulfate transport protein; Provisional
 22-247 1.48e-57

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 184.83  E-value: 1.48e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  22 CLIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRR 101
Cdd:CHL00187   12 SIYIISLSYIIFLLVLPILALLIKASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKR 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 102 FLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVARELIPLMQAQGRDLEEAA 181
Cdd:CHL00187   92 LLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAA 171

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2007922432 182 TSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHIELLYHDY 247
Cdd:CHL00187  172 WSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNIPFKDLVASVLIFQSLEQY 237
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 61-280 1.50e-50

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 165.99  E-value: 1.50e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  61 PDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAH- 139
Cdd:COG4149     3 PEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEELf 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 140 DIKILFALPGIVIASMFVTAPFVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEF 219
Cdd:COG4149    83 GISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEF 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2007922432 220 GAVSVVSGNIRGQTNTLPLHIELLYHDYQTAGAFAAASILATLAVVTIIAKVALERRGAGR 280
Cdd:COG4149   163 GATLMFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 22-268 6.61e-50

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 165.96  E-value: 6.61e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  22 CLIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRR 101
Cdd:TIGR02139   7 LSLGVTLTYLSLIVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKR 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 102 FLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVARELIPLMQAQGRDLEEAA 181
Cdd:TIGR02139  87 IVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 182 TSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHI--ELLYHDYQTAGAFAAASIL 259
Cdd:TIGR02139 167 ASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIfqKLEQYDYAGATAIASVMLI 246


                  ....*....
gi 2007922432 260 ATLAVVTII 268
Cdd:TIGR02139 247 ISFVILLFI 255
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 69-276 2.28e-42

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 144.69  E-value: 2.28e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  69 LTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALP 148
Cdd:TIGR02141   2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGISLVFTFT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 149 GIVIASMFVTAPFVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGN 228
Cdd:TIGR02141  82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGN 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2007922432 229 IRGQTNTLPLHIeLLYHDYQTAGAFAAASILATLAVVTIIAKVALERR 276
Cdd:TIGR02141 162 IPGETQTIPLAI-YDAVESDYELAHQLSLVLLAISLIVLLLVELLNKR 208
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
20-268 2.51e-42

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 146.82  E-value: 2.51e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  20 RRCLIAFVLIIGT------LLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSIT 93
Cdd:PRK10971    7 KRVLPGFTLSLGTsllfvcLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILT 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  94 KFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVARELIPLMQAQ 173
Cdd:PRK10971   87 RYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEEL 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 174 GRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTN--TLPLHIELLYHDYQTAG 251
Cdd:PRK10971  167 GPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEvtSLMIFVRLQEFDYPAAS 246

                         250
                  ....*....|....*..
gi 2007922432 252 AFAAASILATLAVVTII 268
Cdd:PRK10971  247 AIASVILAASLLLLFSI 263
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
20-290 1.36e-41

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 150.31  E-value: 1.36e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  20 RRCLIAFVLIIGTLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPG 99
Cdd:COG1178     9 PRLLLLLLALLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 100 RRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAH---DIKILFALPGIVIASMFVTAPFVARELIPLMQAQGRD 176
Cdd:COG1178    89 RRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALfglEPPDIYGLGGIILVLVLFNYPYVYLLLRAALRSIDAS 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 177 LEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVvsgnIRGQTNTLPLHIellYHDYQTAGAFAAA 256
Cdd:COG1178   169 LEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLV----LGGGYTTLTTAI---YQAWLGDFDLGAA 241

                         250       260       270
                  ....*....|....*....|....*....|....
gi 2007922432 257 SILATLAVVTIIAKVALERRGAGRGRKKTNGDAA 290
Cdd:COG1178   242 AALALVLLLLVLLLLLLERRLRRRRRYATVGGRA 275
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 50-273 2.62e-40

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 139.84  E-value: 2.62e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  50 GWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQ 129
Cdd:TIGR01581   6 GGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 130 GLFGPFLDAHDIKILFALPGIVIASMFVTAPFVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVV 209
Cdd:TIGR01581  86 GLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLV 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2007922432 210 LCNARVMGEFGAVSVVSGNIRGQTNTLPLHIELlyhdYQTAGAFAAASILATLAVVtiIAKVAL 273
Cdd:TIGR01581 166 LAWARALGEFGATLMFAGSIQGKTRTLPLAIYL----NIQSDNIEAAVASALLLLV--IAFLLL 223
modB PRK09421
molybdate ABC transporter permease subunit;
66-273 1.21e-35

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 127.73  E-value: 1.21e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  66 AIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAH-DIKIL 144
Cdd:PRK09421   10 AVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWfGISFA 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 145 FALPGIVIASMFVTAPFVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSV 224
Cdd:PRK09421   90 FSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATIT 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2007922432 225 VSGNIRGQTNTLPLHIellYHDYQTAGAFAAASILATLAVvtIIAKVAL 273
Cdd:PRK09421  170 FVSNIPGETQTIPSAM---YTLIQTPGGESAAARLCIISI--AIALASL 213
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 20-282 1.14e-34

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 126.38  E-value: 1.14e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  20 RRCLIAFVLIIGTLLVVAPLVIIGIEAFSQGW-----------KAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAA 88
Cdd:COG1177     5 GRLLLRLFLALVLLFLYLPILVLVLYSFNDSWfltfppegftlRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  89 AWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLdahdikilfalpGIVIASMFVTAPFVARELIP 168
Cdd:COG1177    85 ALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLW------------GLILAHVVFTLPFVVLVVLA 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 169 LMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGnirGQTNTLPLHI--ELLYHD 246
Cdd:COG1177   153 RLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAG---PGVTTLPVYIysMIRRGI 229

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2007922432 247 YQTAGAFAAASILATLAVVTIIAKValeRRGAGRGR 282
Cdd:COG1177   230 SPEINALSTLLILLSLLLLLLAERL---RRRGERRR 262
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-280 1.87e-32

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 125.27  E-value: 1.87e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432   2 SGVSSHRKPPRVGDAPLVRRCLIAFVLIIGTLLVVAPLVIIGIEAFSQG------WKAYSATITHPDTRHAIMLTVLTAL 75
Cdd:COG1178   269 ATVGGRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKAlddnltLDNYRFVLLDPSLLRALLNSLLLAL 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  76 IAVPVNTAFGVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFvyglqglfgPFLDAHDIKILFALPGIVIASM 155
Cdd:COG1178   349 LAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLL---------LFNRPLPLLLYGTLAILVLAYV 419

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 156 FVTAPFVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSgniRGQTNT 235
Cdd:COG1178   420 VRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLR---PPGFET 496

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2007922432 236 LPLHIELLYHDYQTAGAFAAASIlatLAVVTIIAKVALERRGAGR 280
Cdd:COG1178   497 LAVLIYQLASSGRYGEAAALALL---LVLVSLLPVLLLERLLGRR 538
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 23-280 4.97e-27

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 106.38  E-value: 4.97e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  23 LIAFVLIIGTLLVVAPLVIIGIEAFSQ-----------GWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWS 91
Cdd:COG1176    14 LLLPALLWLLLFFVLPLLLLLVYSFTTrdpyggvvpgfTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYF 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  92 ITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDA-----HDIKILFALPGIVIASMFVTAPFVAREL 166
Cdd:COG1176    94 LARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLAlglidEPLRLLYTEFAVVIGLVYVYLPFMVLPL 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 167 IPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGnirGQTNTLPLHIE---LL 243
Cdd:COG1176   174 YAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGG---GKVLMIGNLIYqqfLS 250

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 2007922432 244 YHDYQTAGAFAAASILATLAVVTIIAKVALERRGAGR 280
Cdd:COG1176   251 ALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-277 4.19e-22

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 93.28  E-value: 4.19e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432   1 MSGVSSHRKPPRVGDAPLVRRCLIAFVLIIGTLLVVAPLVIIGIEAFSQ-----------GWKAYSATITHPDTRHAIML 69
Cdd:COG1175     1 MTTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDwnllgpppefvGLDNYARLFTDPRFWNALGN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  70 TVLTALIAVPVNTAFGVAAAWSITKfDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQ-GLFGPFLDA---HDIKIL- 144
Cdd:COG1175    81 TLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDyGLLNALLGAlglEPINWLg 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 145 ---FALPGIVIASMFVTAPFVAreLIPL--MQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEF 219
Cdd:COG1175   160 dpsLALPAVIIVTVWKGTGFNM--LIFLagLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVF 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2007922432 220 GAVSVV-SGNIRGQTNTLPLHI-ELLYHDYQTAGAFAAASIL-ATLAVVTIIAKVALERRG 277
Cdd:COG1175   238 DLVYVLtGGGPGNSTTTLVLYIyQTAFQQFDFGYASAIAVVLfLIILVLTLLQLRLLRRRE 298
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 67-264 9.41e-22

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 90.03  E-value: 9.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  67 IMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGpfldahdIKILFA 146
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG-------ILPGLG 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 147 LPGIVIASMFVtAPFVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVS 226
Cdd:cd06261    74 LPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2007922432 227 GNIRGQTNTLPLHIELLYHDYQTAGAFAAASILATLAV 264
Cdd:cd06261   153 GGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 18-228 3.46e-19

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 87.43  E-value: 3.46e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  18 LVRRCLIAFVLIIGTLLVVAPLVIIGIEAFSQG---------WKAYSATITH-PDTRHAIMLTVLTALIAVPVntAFgvA 87
Cdd:TIGR03262   1 LIARLLLAGMILALLLFLLLPLLALLTKSVYDSdgdfiglanFAEYFATPGLlQSLGNSLTVSAIVTAIVVPL--AF--A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  88 AAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIkilFALPGIVIASMFVTAPFVARELI 167
Cdd:TIGR03262  77 FAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSI---YGFWGIVIGEVFYTFPHALMILV 153

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2007922432 168 PLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGN 228
Cdd:TIGR03262 154 TALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGD 214
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 2-282 5.51e-16

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 76.58  E-value: 5.51e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432   2 SGVSSHRKPPRVGDAPLVrrcLIAFVLIIGtlLVVAPLVIIGIEAFSQ----GWKAYSATITHPDTRHAIMLTVLTALIA 77
Cdd:PRK15050   11 AHAAAARRRRRLRPLLWL---LLPLLVLAP--LVVYPLVRVVLQSLTGehglGLATYRAVLGSPDFRGALLTTLQIAFAS 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  78 VPVNTAFGVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQG--------LFGpfLDAHDIKILFALPG 149
Cdd:PRK15050   86 TAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGsvnialqrLFG--LEAPPLDFLYSPGG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 150 IVIASMFVTAPFVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNi 229
Cdd:PRK15050  164 VILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAK- 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2007922432 230 rgQTNTLPLHIE---LLYHDYQTAGAFAAASILATLAVVTIIAKVAleRRGAGRGR 282
Cdd:PRK15050  243 --DVVTLPVLIYskaIVDFDYPTACAIAVVNLALSLGLYALYRRVN--RRAGGGSR 294
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 70-236 4.17e-15

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 71.81  E-value: 4.17e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  70 TVLTALIAVPVNTAFGVAaawsitkfDFPGRRFLLVLIEIPFSISPIVAGvayLFVYGLQGLFGPFldaHDIKILFALPG 149
Cdd:NF038017    9 TLIAALIGIPLGALLALR--------RFPGRRLVISLLNTLMGLPPVVVG---LIVYLLLSRSGPL---GFLGLLYTPTA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 150 IVIASMFVTAPFVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVtLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNI 229
Cdd:NF038017   75 MIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGNI 153


                  ....*..
gi 2007922432 230 RGQTNTL 236
Cdd:NF038017  154 RGYTRVL 160
PhnU TIGR03226
2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease ...
 23-280 8.65e-14

2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).


Pssm-ID: 274484  Cd Length: 288  Bit Score: 69.97  E-value: 8.65e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  23 LIAFVLIIGTLLVVAPLVIIGIEAF-----SQGWKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDF 97
Cdd:TIGR03226  21 ILALAALVLAPLFFYPLALIAELALldahgNLSLAAFRQFFASHDFIDALGNTLQIAFAAAGGALVLGSLLAAILFFIPF 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  98 PGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFL------DAHDIKILFALPGIVIASMFVTAPFVARELIPLMQ 171
Cdd:TIGR03226 101 PGAQLVGRFIDLFIAFPSFLIAFAFIFIYGSAGLLNGALmaafafDAPPLDFLFGAGGVILAEITFFTPFVMRPLLAGFA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 172 AQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGnirGQTNTLPLHI---ELLYHDYQ 248
Cdd:TIGR03226 181 QIDKRLLEAASILGAHGLMLARQVIFPAALPAIAAGGILCFLLTLNEFGILLFIGA---AGLITLPMAIyskAILDIDLP 257

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2007922432 249 TAGAFAAASILATLAVvtiiakVALERRGAGR 280
Cdd:TIGR03226 258 AAAAGALIMIALSLAL------FALYRLAAAR 283
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 34-282 2.62e-13

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 68.14  E-value: 2.62e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  34 LVVAPLVIIGIEAFSQGWKAYSAT-ITHPDTR--------HAI----MLTVLTALIAVPVntafGVAAAWSITKFDFPGR 100
Cdd:COG0581     1 LALLPLVWILGTVLVKGLPALSWEfLTSSPSPgpegggilPAIvgtlLLVLLATLIAVPL----GVLAAIYLAEYARGGR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 101 --RFLLVLIEIPFSISPIVAGvayLFVYGLqglFGPFLDAHdiKILFAlpGIVIASMFVTaPFVAR------ELIPlmqa 172
Cdd:COG0581    77 laRLIRFAIDVLAGVPSIVYG---LFGYAL---FVLTLGLG--FSLLA--GALALALLML-PVVIRtteealRLVP---- 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 173 qgRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGE-------FGAVSVVSGNIRGQTNTLPLHIELLYH 245
Cdd:COG0581   142 --NSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGEtapllftAGVSPFLPLSLFDPFATLPVHIYNLAS 219

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 2007922432 246 DYQTAG---AFAAASILATLAVVTIIAKVALERRGAGRGR 282
Cdd:COG0581   220 SPYPAAqelAWAAALVLLLLVLLLNLLARLLRRRFRKKLK 259
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 23-277 2.97e-13

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 68.45  E-value: 2.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  23 LIAFVLIIGTLLVVAPLVIIGIEAFS--QGWKAYSATITHPDTRH---------AIMLTVLTALIAVPVNTAFGVAAAWS 91
Cdd:TIGR02138  10 FSAVIIVLVLLLIVLFLLYEAIPAFEknGILNFLTGTVWDPGSGPvqeqygalpLIVGTLITSLIALLIAVPVGIGIAIF 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  92 ITKFDFP-GRRFLLVLIEIPFSISPIVAGVAYLFVYG--LQGLFGPFLDAHDIKILF-----ALPGIVIASMFVtaPFVA 163
Cdd:TIGR02138  90 LSEIAPKrVRSVLKPVVELLAGIPSVVYGFWGLFVLVpfLKPHFQPFLGSNLGLIPLfggpiLTAGIVLAIMIL--PTIA 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 164 RELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGN--------IRGQTNT 235
Cdd:TIGR02138 168 SISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNvfpisplsLFDPGTT 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2007922432 236 LPLHIELLYHD-----YQTAGAFAAASILATLAVVTIIAKVALERRG 277
Cdd:TIGR02138 248 ITSLIANQFGEasggsVHTSALFALGLVLFVITLLVNILARYIVRRR 294
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 17-201 2.73e-12

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 65.50  E-value: 2.73e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  17 PLVRRCLIAFVLIIGTLLVVAPLVIIGI-------EAFSQG---------WKAYSATITHPDTRHAIMLTVLTALIAVPV 80
Cdd:COG0395    10 RRLGRILLYLLLILLALLFLFPLYWMVVtsfkppaEIFSGPpsllpseftLENYRAAFTDGPFGRYLLNSLIVAVVSTVL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  81 NTAFGVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLdahdikilfalpGIVIASMFVTAP 160
Cdd:COG0395    90 SLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYW------------GLILPYLAFGLP 157

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2007922432 161 FVarelIPLMQA--QG--RDLEEAATSLGASGWRTFFSVTLPNIK 201
Cdd:COG0395   158 FG----IFLLRQffRSipRELEEAARIDGASEFRIFWRIVLPLSK 198
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 23-206 1.72e-11

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 64.47  E-value: 1.72e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  23 LIAFVLIIgtLLVVAPLVIIGIEAFSQGWkaySATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRF 102
Cdd:PRK09433    7 VLAAALLV--ALALLALLALWLHAPGGDW---DAVWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 103 LLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHDIKILFA---LPGIVIASMFVTAPFVAR------ELIPLMQAQ 173
Cdd:PRK09433   82 LLRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLLQALGLEWPFSiygLQGILLAHVFFNLPLATRlllqalESIPAEQRQ 161

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2007922432 174 grdleeAATSLGASGWRTFFSVTLPNIKWALLY 206
Cdd:PRK09433  162 ------LAAQLGMRGWQFFRLVEWPYLRRQLPP 188
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 5-259 2.36e-10

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 61.00  E-value: 2.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432   5 SSHRKPPRVGDAPLVRRCLIAFVLIIGTLLVVAPLVIIGIEAFSQGWkaySATITHPDTRHAIMLTVLTALIAVPVNTAF 84
Cdd:PRK09433  262 ATLLRGWRDPQDSLWSRLWDGLLIVLALLLLLPPLLAVVVSGLNASL---LRVLAQPALWQALWTSLRIALAAALLAVVL 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  85 GVAAAWSITKFDFPGRRFLLVLIE----IPFSISPIVAGVAyLFVyglqgLFGPFLDAHdikiLFALPGIVIASMFVTAP 160
Cdd:PRK09433  339 TMMLLWSSRELRLRQRKLAAQALElsgmLILAMPGIVLATG-LFL-----LLRNTTDLP----ASALGIVILTNALMALP 408

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 161 FVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVV-SGNIRgqtnTLPLh 239
Cdd:PRK09433  409 YALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGVIALFgSQDFR----TLPF- 483

                         250       260
                  ....*....|....*....|...
gi 2007922432 240 ieLLYH---DYQTAGAFAAASIL 259
Cdd:PRK09433  484 --LLYQqlgSYRSQDAAVTALLL 504
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 26-276 2.58e-10

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 59.56  E-value: 2.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  26 FVLIIGTLLVVAPLVIIGIEAFSQG---------WKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFD 96
Cdd:TIGR00974   6 FISLLSALLALLPLIWILWYILIKGlpalnleffTKSPTPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIGAAIYLAEYA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  97 FPGR--RFLLVLIEIPFSISPIVAGvayLFVYGLqglfgpFLDAHDIKILFALPGIVIASmFVTAPFVARELIPLMQAQG 174
Cdd:TIGR00974  86 NGSRftKIIRFAVDILAGVPSIVVG---LFGYGF------FVLTYLGGGFSLLAGALALA-LLILPVIIRTTEEALKAVP 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 175 RDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSG-------NIRGQTNTLPLHI-----EL 242
Cdd:TIGR00974 156 KDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGgsaftppNLFDPFATLPVLIynlasEG 235

                         250       260       270
                  ....*....|....*....|....*....|....
gi 2007922432 243 LYHDYQTAgAFAAASILATLAVVTIIAKVALERR 276
Cdd:TIGR00974 236 PYVEAQQL-AWAAALVLIVLVLLLNLIARLLRRR 268
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 27-267 3.79e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 53.23  E-value: 3.79e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  27 VLIIGTLLVVAPLVIIGIEAFSQGWKAYSATI--THPDTRHAIML------------TVLTALIAVPVNTAFGVAAAWSI 92
Cdd:COG3833    21 VLIILAIIALFPILWVVSASFNPGGSLYSSSLipENFTLENYKKLftetpflrwflnSLIVAVVTAIISVFLAALAAYAF 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  93 TKFDFPGRRFLLVLIEIpFSISPIVAG-VAYLFVYGLQGLfgpfLDAHDIKILFALPGIVIASMFVTAPFVarELIPlmq 171
Cdd:COG3833   101 SRFRFKGRKAGLLALLL-LQMFPAFLAlVALYLLLSALGL----LNTLLGLILVYLGGAIPFNTWLMKGYF--DTIP--- 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 172 aqgRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVsgnIRGQTN-TLPLHIELLYHDYQTA 250
Cdd:COG3833   171 ---KELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVL---LRSPENyTLAVGLYSFVSDQRNT 244

                         250
                  ....*....|....*....
gi 2007922432 251 --GAFAAASILATLAVVTI 267
Cdd:COG3833   245 nwGVFAAGAVLVAIPIVIL 263
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 22-275 4.49e-08

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 53.27  E-value: 4.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  22 CLIAFVLIIGtLLVVAPLVIIGIEAFSQGWKAYS----ATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDF 97
Cdd:COG4132    17 GLLPFFLFVL-LFLLLPTVWVVIGAFQDDDGGFTlanyAELTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRGGP 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  98 PG-RRFLLVLIeipfSISPIVAGV----AYLFVYGLQGLFGPFLDAHDIKI-----LFALPGIVIASMFVTAPFVARELI 167
Cdd:COG4132    96 GWlRRAVLAFS----GVASNFAGVplafAFIATLGRNGLVTLLLKQLGIDLydgfnLYSFWGLILVYLYFQIPLMVLLLY 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 168 PLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFG-AVSVVSGNIrgqtNTLPLHIELL--- 243
Cdd:COG4132   172 PALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYAtAYALTGGNY----NLVPIRIGALisg 247

                         250       260       270
                  ....*....|....*....|....*....|....
gi 2007922432 244 --YHDYQTAGAFAAASILaTLAVVTIIAKVALER 275
Cdd:COG4132   248 dvLLDPNLGAALALGMIV-IMALVMALYQWLQRR 280
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 86-276 1.41e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 50.76  E-value: 1.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  86 VAAAWSITKFDFPGRRFLLVLIEIPFSIsPIVAGVAYLFVYGLQGLFGpfldahdikilFALPGIVIASMFVTAPFVARE 165
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQAL-PSFVLAILLVVIAILSILG-----------HGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 166 LIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVsGNIRGQTNTLPLHIELLYH 245
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL-GSWPGLGLLLIEAILGYDY 149

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2007922432 246 DYQTAGAFAAASILATLAVVTIIAKVALERR 276
Cdd:pfam00528 150 PEIQGPVLAAALILLLLNLLVDILQRLLDPR 180
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 29-276 1.42e-07

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 52.23  E-value: 1.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  29 IIGTLLVVAPLVIIGIEAFSQGW-----KAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRFL 103
Cdd:TIGR01253   6 LAGGVSAISFIIAFAGAAFLAIFalageDDWRAVFQDDYLQHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLGKKAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 104 LVLIEIPFSISPIVAGVAYLFVYGLQG-------LFGPFLDAHdikiLFALPGIVIASMFVTAPFVARELIPLMQAQGRD 176
Cdd:TIGR01253  86 LKLCALTFILPALVAIFGIIGIYGRQGwlatlanLFGLEWQFH----IYGLQGILIAHLFFNIPLAAQLFLQALENIPGE 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 177 LEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNIRGQTNTLPLHIELLYhDYQtagaFAAA 256
Cdd:TIGR01253 162 QRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLGGGPQATTIELAIYQAILF-DFD----LAKA 236

                         250       260
                  ....*....|....*....|
gi 2007922432 257 SILATLAVVTIIAKVALERR 276
Cdd:TIGR01253 237 ALFALLQFVCCLGLFLLSQR 256
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 12-206 8.30e-07

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 49.87  E-value: 8.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  12 RVGDAPLVRRCLIAFVLIIgtLLVVAPLVIIGIEAFSQGWKAYSATITHPDTRH----------AIMLTVLTALIAVPVN 81
Cdd:COG4135   295 GLGDPALRRLGLALMLLIA--LLSLLGLALLLLWSFAGRWRFPDALPSSWTLRFwqraapgllePLGNTLLLALASALIA 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  82 TAFGVAAAWSITKFDFPGRRFLLVLIEIPFsispIVAGVAYLFvyGLQGLF-GPFLDAHdikilfaLPGIVIASMFVTAP 160
Cdd:COG4135   373 LVLVLACLEAEARRGRRPGRRALWLLYLPL----LVPQIAFLF--GLQVLLlRLGLDGT-------WLAVIWAHLVFVLP 439

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2007922432 161 FVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLY 206
Cdd:COG4135   440 YVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILT 485
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 74-229 1.11e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 48.92  E-value: 1.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  74 ALIAVPVNTAFGVAAAWSITKFDFPGRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFLDAHD-----IKILFALP 148
Cdd:PRK09497   72 ALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGvidtpIRIMFTES 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 149 GIVIASMFVTAPFVARELIPLMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEF-------GA 221
Cdd:PRK09497  152 AVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFyvsdllgGA 231


                  ....*...
gi 2007922432 222 VSVVSGNI 229
Cdd:PRK09497  232 KNLLIGNV 239
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 51-210 1.01e-05

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 45.75  E-value: 1.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  51 WKAYSATITHPDTRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDFPGRRFLLVLIEIpFSISP-IVAGVAYLFVYGLQ 129
Cdd:PRK09500   43 TKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFV-VMMSPdIVMAISLLVLFMLL 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 130 GL---FGPFLDAHdikILFALPgiviasmFVTAPFVAReliplMQAQGRDLEEAATSLGASGWRTFFSVTLPNIKWALLY 206
Cdd:PRK09500  122 GIqlgFWSLLFAH---ITFCLP-------FVVVTVYSR-----LKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAA 186


                  ....
gi 2007922432 207 GVVL 210
Cdd:PRK09500  187 GWLL 190
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 50-283 6.78e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 44.29  E-value: 6.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  50 GWKAYsatithpdtRHAIMLTVLTALIAvpvnTAFGVAAAWSITKFDFPG--RRFLLVLIEIPFSISPIVAGVAYLFVYG 127
Cdd:TIGR03262 330 GWEAY---------KNSLRLAATTALIG----TILVFGGAYLIEKTRGFGllRGVLRFLAILPMAVPGLVLGLGYIFFFN 396

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 128 -----LQGLFGPFldahdikILFALPGIV--IASMFVTAPFVARELiplmqaqGRDLEEAATSLGASGWRTFFSVTLPNI 200
Cdd:TIGR03262 397 aptnpLNGLYGTM-------ALLVLCTVVhfYTVSHLTAVTALKQI-------DSEFEAVSASLKVPFYKTFLRVTLPVC 462

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 201 KWALLYGVVLCNARVMGEFGAVSVVSGnirgqTNTLPLHIELLYHDyqTAGAFAAASILATLAVVT-IIAKVALERRGAG 279
Cdd:TIGR03262 463 LPAILDIARYLFVNSMTTVSAVVFLYS-----PDTKLASVAILNMD--DAGDIAPAAAMATLIVLTsAVAKLLFALASRR 535


                  ....
gi 2007922432 280 RGRK 283
Cdd:TIGR03262 536 LLRR 539
pstC PRK11275
phosphate ABC transporter permease PstC;
67-228 1.04e-04

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 43.14  E-value: 1.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  67 IMLTVLTALIAVPVntAFGVAAAwsITKFDfPG--RRFLLVLIEIPFSISPIVAGVAYLFVYGlqGLFGPFLDAHDIKIL 144
Cdd:PRK11275   79 LVTSFIALLIAVPV--SFGIALF--LTELA-PGwlKRPLGIAIELLAAIPSIVYGMWGLFVFA--PLFATYFQEPVGNVL 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 145 FALPgiVIASMFVTAPF----------VARELIPLMQAQGRD--------LEEAATSLGASGWRTFFSVTLPNIKWALLY 206
Cdd:PRK11275  152 SNIP--IVGALFSGPAFgigilaagviLAIMIIPYIAAVMRDvfeqtpvmMKESAYGIGCTTWEVIWRIVLPFTKNGVIG 229

                         170       180
                  ....*....|....*....|..
gi 2007922432 207 GVVLCNARVMGEFGAVSVVSGN 228
Cdd:PRK11275  230 GVMLGLGRALGETMAVTFIIGN 251
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 63-200 1.82e-03

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 39.33  E-value: 1.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  63 TRHAIMLTVLTALIAVPVNTAFGVAAAWSITKFDfpgrRFLLVLIEIPFSISPIvagvayLFVYGLQGLFGPfldahdik 142
Cdd:COG1173    78 ARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVD----AVLMRLVDVLLAFPSL------LLAIALVAVLGP-------- 139

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2007922432 143 ilfALPGIVIASMFVTAPFVARelipLMQAQ-----GRDLEEAATSLGASGWRTFFSVTLPNI 200
Cdd:COG1173   140 ---GLLNVILALGLTGWPGYAR----LVRAQvlslrEREYVEAARALGASPLRIIFRHILPNV 195
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 17-240 2.41e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 38.68  E-value: 2.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  17 PLVRRCLIAFVLIIGTLLVVAPLVIIGIEAFS--------QGWKA--YSATITHPDTRHAIMLTVLTALIAVPVNTAFGV 86
Cdd:PRK10592    5 PVVRSPWRIVILVLGFTFLYAPMLMLVIYSFNssklvtvwAGWSTrwYGELFRDDAMMSAVGLSLTIAACAATAAAILGT 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  87 AAAWSITKF-DFPGRRFLLVLIEIPFSISPIVAGVAYLFVY-GLQGLFGPFLDAHDIKILFALPGIVIASMFVTAPFVAR 164
Cdd:PRK10592   85 IAAVVMVRFgRFRGSNGFAFMITAPLVMPDVITGLSLLLLFvALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVISSRLR 164

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2007922432 165 ELiplmqaqGRDLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMGEFGAVSVVSGNirGQTnTLPLHI 240
Cdd:PRK10592  165 EL-------DRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGP--GAT-TLPMLV 230
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 66-219 3.32e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 38.54  E-value: 3.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432  66 AIMLTVLTALIAVPVntAFGVAAAWSITkfdfpgRRFLLVLIEIPFSISPIVAGVAYLFVYGLQGLFGPFL-----DAHD 140
Cdd:PRK10683  106 AAISTLCCLLIGYPL--AWAVAHSKPST------RNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLlwlgvIDQP 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007922432 141 IKILFALPGIVIASMFVTAPFVareLIPLMQAQGR---DLEEAATSLGASGWRTFFSVTLPNIKWALLYGVVLCNARVMG 217
Cdd:PRK10683  178 LTILHTNLAVYIGIVYAYLPFM---VLPIYTALTRidySLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVG 254


                  ..
gi 2007922432 218 EF 219
Cdd:PRK10683  255 EF 256
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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