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Conserved domains on  [gi|2018021598|ref|WP_208144147|]
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polysaccharide biosynthesis tyrosine autokinase [Mammaliicoccus fleurettii]

Protein Classification

P-loop NTPase family protein( domain architecture ID 1562424)

P-loop NTPase (nucleoside triphosphate hydrolase) family protein contains two conserved sequence signatures, the Walker A motif (the P-loop proper) and Walker B motif which bind, respectively, the beta and gamma phosphate moieties of the bound nucleotide (typically ATP or GTP), and a Mg(2+) cation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
P-loop_NTPase super family cl38936
P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain ...
 26-220 1.90e-84

P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a hydrophobic residue). The Walker A and B motifs bind the beta-gamma phosphate moiety of the bound nucleotide (typically ATP or GTP) and the Mg2+ cation, respectively. The P-loop NTPases are involved in diverse cellular functions, and they can be divided into two major structural classes: the KG (kinase-GTPase) class which includes Ras-like GTPases and its circularly permutated YlqF-like; and the ASCE (additional strand catalytic E) class which includes ATPase Binding Cassette (ABC), DExD/H-like helicases, 4Fe-4S iron sulfur cluster binding proteins of NifH family, RecA-like F1-ATPases, and ATPases Associated with a wide variety of Activities (AAA). Also included are a diverse set of nucleotide/nucleoside kinase families.


The actual alignment was detected with superfamily member TIGR01007:

Pssm-ID: 476819 [Multi-domain]  Cd Length: 204  Bit Score: 249.66  E-value: 1.90e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  26 EKFRGIRSNILFSTADddVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNN-ITGLSNVI 104
Cdd:TIGR01007   1 EYYNAIRTNIQFSGAE--IKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNkITGLTNFL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 105 INKNTTEEAVHTTEITNLDVLTSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNTVTDAQLFGELTKNAIFII 184
Cdd:TIGR01007  79 SGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASILVT 158

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2018021598 185 DVESNNKESVKKGKELLEKSGTKILGAVLNKAPLDK 220
Cdd:TIGR01007 159 DAGKIKKREVKKAKEQLEQAGSNFLGVVLNKVDISV 194
 
Name Accession Description Interval E-value
eps_fam TIGR01007
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ...
 26-220 1.90e-84

capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273392 [Multi-domain]  Cd Length: 204  Bit Score: 249.66  E-value: 1.90e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  26 EKFRGIRSNILFSTADddVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNN-ITGLSNVI 104
Cdd:TIGR01007   1 EYYNAIRTNIQFSGAE--IKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNkITGLTNFL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 105 INKNTTEEAVHTTEITNLDVLTSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNTVTDAQLFGELTKNAIFII 184
Cdd:TIGR01007  79 SGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASILVT 158

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2018021598 185 DVESNNKESVKKGKELLEKSGTKILGAVLNKAPLDK 220
Cdd:TIGR01007 159 DAGKIKKREVKKAKEQLEQAGSNFLGVVLNKVDISV 194
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 26-215 4.29e-77

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 230.53  E-value: 4.29e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  26 EKFRGIRSNILFSTADDDVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNNITGLSNVII 105
Cdd:cd05387     1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 106 NKNTTEEAVHTTEITNLDVLTSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNTVTDAQLFGELTKNAIFIID 185
Cdd:cd05387    81 GQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVVR 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 2018021598 186 VESNNKESVKKGKELLEKSGTKILGAVLNK 215
Cdd:cd05387   161 AGKTRRREVKEALERLEQAGAKVLGVVLNK 190
Mrp COG0489
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ...
 35-220 5.37e-67

Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440255 [Multi-domain]  Cd Length: 289  Bit Score: 208.12  E-value: 5.37e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  35 ILFSTADDDVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNNITGLSNVIINKNTTEEAV 114
Cdd:COG0489    83 LLLLLLRLLLEVIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLAGEASLEDVI 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 115 HTTEITNLDVLTSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNTVTDAQLFGELTKNAIFIIDVESNNKESV 194
Cdd:COG0489   163 QPTEVEGLDVLPAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVLLVVRPGKTALDDV 242

                         170       180
                  ....*....|....*....|....*.
gi 2018021598 195 KKGKELLEKSGTKILGAVLNKAPLDK 220
Cdd:COG0489   243 RKALEMLEKAGVPVLGVVLNMVCPKG 268
PRK09841 PRK09841
tyrosine-protein kinase;
19-214 1.56e-37

tyrosine-protein kinase;


Pssm-ID: 182106 [Multi-domain]  Cd Length: 726  Bit Score: 138.50  E-value: 1.56e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  19 KPKAVVSEKFRGIRSNILFSTADDDVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNNIT 98
Cdd:PRK09841  506 NPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEH 585

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  99 GLSNVIINKNTTEEAVHTTEITNLDVLTSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNTVTDAQLFGELTK 178
Cdd:PRK09841  586 GLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVG 665

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2018021598 179 NAIFIIDVESNNKESVKKGKELLEKSGTKILGAVLN 214
Cdd:PRK09841  666 TSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILN 701
AAA_31 pfam13614
AAA domain; This family includes a wide variety of AAA domains including some that have lost ...
 49-163 6.73e-14

AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.


Pssm-ID: 433350 [Multi-domain]  Cd Length: 177  Bit Score: 67.22  E-value: 6.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  49 VTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMR-KPTQHYIFNKNNI-TGLSNVIINKNTTEEAVHTTEITNLDVLT 126
Cdd:pfam13614   6 IANQKGGVGKTTTSVNLAAALAKKGKKVLLIDLDPQgNATSGLGIDKNNVeKTIYELLIGECNIEEAIIKTVIENLDLIP 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2018021598 127 SG----PIPPNPSELIGSTNML-DIFEELKQQYDFILVDTPP 163
Cdd:pfam13614  86 SNidlaGAEIELIGIENRENILkEALEPVKDNYDYIIIDCPP 127
 
Name Accession Description Interval E-value
eps_fam TIGR01007
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ...
 26-220 1.90e-84

capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273392 [Multi-domain]  Cd Length: 204  Bit Score: 249.66  E-value: 1.90e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  26 EKFRGIRSNILFSTADddVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNN-ITGLSNVI 104
Cdd:TIGR01007   1 EYYNAIRTNIQFSGAE--IKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNkITGLTNFL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 105 INKNTTEEAVHTTEITNLDVLTSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNTVTDAQLFGELTKNAIFII 184
Cdd:TIGR01007  79 SGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASILVT 158

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2018021598 185 DVESNNKESVKKGKELLEKSGTKILGAVLNKAPLDK 220
Cdd:TIGR01007 159 DAGKIKKREVKKAKEQLEQAGSNFLGVVLNKVDISV 194
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 26-215 4.29e-77

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 230.53  E-value: 4.29e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  26 EKFRGIRSNILFSTADDDVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNNITGLSNVII 105
Cdd:cd05387     1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 106 NKNTTEEAVHTTEITNLDVLTSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNTVTDAQLFGELTKNAIFIID 185
Cdd:cd05387    81 GQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVVR 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 2018021598 186 VESNNKESVKKGKELLEKSGTKILGAVLNK 215
Cdd:cd05387   161 AGKTRRREVKEALERLEQAGAKVLGVVLNK 190
Mrp COG0489
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ...
 35-220 5.37e-67

Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440255 [Multi-domain]  Cd Length: 289  Bit Score: 208.12  E-value: 5.37e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  35 ILFSTADDDVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNNITGLSNVIINKNTTEEAV 114
Cdd:COG0489    83 LLLLLLRLLLEVIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLAGEASLEDVI 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 115 HTTEITNLDVLTSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNTVTDAQLFGELTKNAIFIIDVESNNKESV 194
Cdd:COG0489   163 QPTEVEGLDVLPAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVLLVVRPGKTALDDV 242

                         170       180
                  ....*....|....*....|....*.
gi 2018021598 195 KKGKELLEKSGTKILGAVLNKAPLDK 220
Cdd:COG0489   243 RKALEMLEKAGVPVLGVVLNMVCPKG 268
EpsG TIGR03029
chain length determinant protein tyrosine kinase EpsG; The proteins in this family are ...
 14-214 6.81e-42

chain length determinant protein tyrosine kinase EpsG; The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).


Pssm-ID: 132074 [Multi-domain]  Cd Length: 274  Bit Score: 143.47  E-value: 6.81e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  14 LITHKKPKAVVSEKFRGIRSNILFSTADDDVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFN 93
Cdd:TIGR03029  73 LIAAYQPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFK 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  94 KNNITGLSNVIINKNTTEEAVHTTEITNLDVLTSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNTVTDAQLF 173
Cdd:TIGR03029 153 LSEQRGLSDILAGRSDLEVITHIPALENLSVLPAGAIPPNPQELLARPAFTDLLNKVMGDYDVVIVDTPSAEHSSDAQIV 232

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2018021598 174 GELTKNAIFIIDVESNNKESVKKGKELLEKSGTKILGAVLN 214
Cdd:TIGR03029 233 ATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLN 273
PRK09841 PRK09841
tyrosine-protein kinase;
19-214 1.56e-37

tyrosine-protein kinase;


Pssm-ID: 182106 [Multi-domain]  Cd Length: 726  Bit Score: 138.50  E-value: 1.56e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  19 KPKAVVSEKFRGIRSNILFSTADDDVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNNIT 98
Cdd:PRK09841  506 NPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEH 585

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  99 GLSNVIINKNTTEEAVHTTEITNLDVLTSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNTVTDAQLFGELTK 178
Cdd:PRK09841  586 GLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVG 665

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2018021598 179 NAIFIIDVESNNKESVKKGKELLEKSGTKILGAVLN 214
Cdd:PRK09841  666 TSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILN 701
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 20-215 1.40e-35

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 133.31  E-value: 1.40e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  20 PKAVVSEKFRGIRSNILFSTADDDVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNNITG 99
Cdd:TIGR01005 529 PRSTFAEAFRNAKLACDFALADAENNLIAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPG 608

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 100 LSNVIINKNTTEEAVHTTEITNLDVLTSGPI---PPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNTVTDAQLFGEL 176
Cdd:TIGR01005 609 LLDLLAGEASIEAGIHRDQRPGLAFIAAGGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAAL 688

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2018021598 177 TKNAIFIIDVESNNKESVKKGKELLEKSGTKILGAVLNK 215
Cdd:TIGR01005 689 ADGILFVTEFERSPLGEIRDLIHQEPHANSDVLGVIFNA 727
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
4-214 7.74e-35

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 131.04  E-value: 7.74e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598   4 KKKLDKEVTTLITHKKPKAVVSEKFRGIRSNILFSTADDDVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDM 83
Cdd:PRK11519  486 KGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  84 RKPTQHYIFNKNNITGLSNVIINKNTTEEAVHTTEITNLDVLTSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPP 163
Cdd:PRK11519  566 RKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPP 645

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2018021598 164 VNTVTDAQLFGELTKNAIFIIDVESNNKESVKKGKELLEKSGTKILGAVLN 214
Cdd:PRK11519  646 ILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILN 696
FlhG COG0455
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ...
 60-163 2.82e-18

MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440223 [Multi-domain]  Cd Length: 230  Bit Score: 80.32  E-value: 2.82e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  60 TVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNNITGLSNVIINKNTTEEAVHTTEiTNLDVLTSGPIPPNPSELIG 139
Cdd:COG0455     1 TVAVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLAGEADLEDAIVQGP-GGLDVLPGGSGPAELAELDP 79

                          90       100
                  ....*....|....*....|....
gi 2018021598 140 STNMLDIFEELKQQYDFILVDTPP 163
Cdd:COG0455    80 EERLIRVLEELERFYDVVLVDTGA 103
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 56-182 1.57e-17

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 78.75  E-value: 1.57e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  56 SGKSTVSANIAITYAQAGFKTLLIDGDmrkP----TQHYIFNKNNIT-GLSNVIINKNTTEEAVHTTEITNLDVLTSGP- 129
Cdd:COG1192    13 VGKTTTAVNLAAALARRGKRVLLIDLD---PqgnlTSGLGLDPDDLDpTLYDLLLDDAPLEDAIVPTEIPGLDLIPANId 89

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2018021598 130 ---IPPNPSELIGSTNML-DIFEELKQQYDFILVDTPPVntvtdaqlFGELTKNAIF 182
Cdd:COG1192    90 lagAEIELVSRPGRELRLkRALAPLADDYDYILIDCPPS--------LGLLTLNALA 138
CpaE COG4963
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ...
 45-164 9.18e-15

Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443989 [Multi-domain]  Cd Length: 358  Bit Score: 72.07  E-value: 9.18e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  45 QTLLVTSDKPASGKSTVSANIAITYAQ-AGFKTLLIDGDMRKPTQHYIFNKNNITGLSNVI-----INKNTTEEAVHTTE 118
Cdd:COG4963   103 RVIAVVGAKGGVGATTLAVNLAWALAReSGRRVLLVDLDLQFGDVALYLDLEPRRGLADALrnpdrLDETLLDRALTRHS 182

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2018021598 119 iTNLDVLtSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPV 164
Cdd:COG4963   183 -SGLSVL-AAPADLERAEEVSPEAVERLLDLLRRHFDYVVVDLPRG 226
AAA_31 pfam13614
AAA domain; This family includes a wide variety of AAA domains including some that have lost ...
 49-163 6.73e-14

AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.


Pssm-ID: 433350 [Multi-domain]  Cd Length: 177  Bit Score: 67.22  E-value: 6.73e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  49 VTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMR-KPTQHYIFNKNNI-TGLSNVIINKNTTEEAVHTTEITNLDVLT 126
Cdd:pfam13614   6 IANQKGGVGKTTTSVNLAAALAKKGKKVLLIDLDPQgNATSGLGIDKNNVeKTIYELLIGECNIEEAIIKTVIENLDLIP 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2018021598 127 SG----PIPPNPSELIGSTNML-DIFEELKQQYDFILVDTPP 163
Cdd:pfam13614  86 SNidlaGAEIELIGIENRENILkEALEPVKDNYDYIIIDCPP 127
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 47-215 2.77e-12

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 63.90  E-value: 2.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  47 LLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNKNNITGLSNVIINKNTTEEAVHT------TEIT 120
Cdd:pfam01656   1 IAIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDPQSNNSSVEGLEGDIAPALQALAEGLKGRVNLDPillkekSDEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 121 NLDVLTSGP----IPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPvntvtdaQLfGELTKNAIF------------II 184
Cdd:pfam01656  81 GLDLIPGNIdlekFEKELLGPRKEERLREALEALKEDYDYVIIDGAP-------GL-GELLRNALIaadyviiplepeVI 152

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2018021598 185 DVesnnkESVKKGKELLEK-------SGTKILGAVLNK 215
Cdd:pfam01656 153 LV-----EDAKRLGGVIAAlvggyalLGLKIIGVVLNK 185
MinD cd02036
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ...
 49-215 3.28e-11

septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.


Pssm-ID: 349756 [Multi-domain]  Cd Length: 236  Bit Score: 61.06  E-value: 3.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  49 VTSDKPASGKSTVSANIAITYAQAGFKTLLIDGD--MRkptqhyifNKNNITGLSNVII--------NKNTTEEAVHTT- 117
Cdd:cd02036     5 ITSGKGGVGKTTTTANLGVALAKLGKKVLLIDADigLR--------NLDLILGLENRIVytlvdvleGECRLEQALIKDk 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 118 EITNLDVLtsgPIPPNPSEL-IGSTNMLDIFEELKQQYDFILVDTPpvntvtdAQLfGELTKNAIFIID--VESNNKE-- 192
Cdd:cd02036    77 RWENLYLL---PASQTRDKDaLTPEKLEELVKELKDSFDFILIDSP-------AGI-ESGFINAIAPADeaIIVTNPEis 145

                         170       180
                  ....*....|....*....|....*.
gi 2018021598 193 SVK---KGKELLEKSGTKILGAVLNK 215
Cdd:cd02036   146 SVRdadRVIGLLESKGIVNIGLIVNR 171
FlhG-like cd02038
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ...
 49-163 6.21e-09

MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.


Pssm-ID: 349758 [Multi-domain]  Cd Length: 230  Bit Score: 54.50  E-value: 6.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  49 VTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMrkptqhyifnknnitGLSNV-----IINKNTTeEAVHTTEITNLD 123
Cdd:cd02038     5 VTSGKGGVGKTNVSANLALALSKLGKRVLLLDADL---------------GLANLdillgLAPKKTL-GDVLKGRVSLED 68

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2018021598 124 VLTSGP-----IPPNP--SELIGSTNM-----LDIFEELKQQYDFILVDTPP 163
Cdd:cd02038    69 IIVEGPegldiIPGGSgmEELANLDPEqkaklIEELSSLESNYDYLLIDTGA 120
MipZ pfam09140
ATPase MipZ; MipZ is an ATPase that forms a complex with the chromosome partitioning protein ...
 47-162 1.17e-07

ATPase MipZ; MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.


Pssm-ID: 401181 [Multi-domain]  Cd Length: 262  Bit Score: 50.92  E-value: 1.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  47 LLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNknnitglsNVIINKNTTEEAVHTTEITNLDVLT 126
Cdd:pfam09140   3 IVVGNEKGGSGKSTTAVHVAVALLYKGARVAAIDLDLRQRTFHRYFE--------NRSATADRTGLSLPTPEHLNLPDND 74

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2018021598 127 SGPIPPNPSelIGSTNMLDIFEELKQQYDFILVDTP 162
Cdd:pfam09140  75 VAEVPDGEN--IDDARLEEAFADLEARCDFIVIDTP 108
Mrp_NBP35 cd02037
Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically ...
 47-214 3.49e-07

Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically iron-sulfur (FeS) cluster scaffolds that function to assemble nascent FeS clusters for transfer to FeS-requiring enzymes. Members include the eukaryotic nucleotide-binding protein 1 (NUBP1) which is a component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery and the archael [NiFe] hydrogenase maturation protein HypB which is required for nickel insertion into [NiFe] hydrogenase.


Pssm-ID: 349757 [Multi-domain]  Cd Length: 213  Bit Score: 49.04  E-value: 3.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  47 LLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFnknnitGLSNVIInkNTTEEAVHTTEITNLDVLT 126
Cdd:cd02037     3 IAVLSGKGGVGKSTVAVNLALALAKKGYKVGLLDADIYGPSIPRLL------GVEGKPL--HQSEEGIVPVEVGGIKVMS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 127 SG-------PIP---PNPSELIgsTNMLD--IFEELkqqyDFILVDTPP------VNTVTDAQLFGEL---TKNAIFIID 185
Cdd:cd02037    75 IGfllpeddAVIwrgPMKSGAI--KQFLKdvDWGEL----DYLIIDLPPgtgdehLSLVQLIPIDGAVvvtTPQEVSLID 148

                         170       180
                  ....*....|....*....|....*....
gi 2018021598 186 vesnnkesVKKGKELLEKSGTKILGAVLN 214
Cdd:cd02037   149 --------VRKAIDMCKKLNIPVLGIVEN 169
minD CHL00175
septum-site determining protein; Validated
 38-212 6.58e-07

septum-site determining protein; Validated


Pssm-ID: 214385 [Multi-domain]  Cd Length: 281  Bit Score: 49.00  E-value: 6.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  38 STADDDVQTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRkptqhyIFNKNNITGLSNVIINK---------N 108
Cdd:CHL00175    9 EKSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIG------LRNLDLLLGLENRVLYTamdvlegecR 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 109 TTEEAVHTTEITNLDVLtsgPIPPNPSEL-IGSTNMLDIFEELK-QQYDFILVD-----------------------TPP 163
Cdd:CHL00175   83 LDQALIRDKRWKNLSLL---AISKNRQRYnVTRKNMNMLVDSLKnRGYDYILIDcpagidvgfinaiapaqeaivvtTPE 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 164 VNTVTDA-QLFGELTKNAIFIID----------VESNNKESVKKGKELLeksGTKILGAV 212
Cdd:CHL00175  160 ITAIRDAdRVAGLLEANGIYNVKllvnrvrpdmIQANDMMSVRDVQEML---GIPLLGAI 216
ParAB_family cd02042
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ...
 56-159 7.10e-06

partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.


Pssm-ID: 349760 [Multi-domain]  Cd Length: 130  Bit Score: 44.07  E-value: 7.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  56 SGKSTVSANIAITYAQAGFKTLLIDGDMRKPTQHYIFNknnitglsNVII-----NKNTTEEAVHTTEItnldVLTsgPI 130
Cdd:cd02042    12 VGKTTLAVNLAAALALRGKRVLLIDLDPQGSLTSWLYD--------YILIdtppsLGLLTRNALAAADL----VLI--PV 77

                          90       100
                  ....*....|....*....|....*....
gi 2018021598 131 PPNPSELIGSTNMLDIFEELKQQYDFILV 159
Cdd:cd02042    78 QPSPFDLDGLAKLLDTLEELKKQLNPPLL 106
SIMIBI cd01983
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ...
 45-82 8.63e-06

SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.


Pssm-ID: 349751 [Multi-domain]  Cd Length: 107  Bit Score: 43.57  E-value: 8.63e-06
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2018021598  45 QTLLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGD 82
Cdd:cd01983     1 RVIAVTGGKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
CpaE-like cd03111
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ...
 48-166 7.47e-05

pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.


Pssm-ID: 349765 [Multi-domain]  Cd Length: 235  Bit Score: 42.65  E-value: 7.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  48 LVTSDKPASGKSTVSANIAITYAQ-AGFKTLLIDGDMRKPTQHYIFNKNNITGLSNVI-----INKNTTEEAVHTTEiTN 121
Cdd:cd03111     4 AVVGAKGGVGASTLAVNLAQELAQrAKDKVLLIDLDLPFGDLGLYLNLRPDYDLADVIqnldrLDRTLLDSAVTRHS-SG 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2018021598 122 LDVLtSGPIPPNPSELIGSTNMLDIFEELKQQYDFILVDTPPVNT 166
Cdd:cd03111    83 LSLL-PAPQELEDLEALGAEQVDKLLQVLRAFYDHIIVDLGHFLD 126
ParA pfam10609
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid ...
 47-214 1.09e-04

NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.


Pssm-ID: 431392 [Multi-domain]  Cd Length: 246  Bit Score: 42.06  E-value: 1.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598  47 LLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDmrkptqhyifnknnITGLSnviINK--NTTEEAVHTT------- 117
Cdd:pfam10609   6 IAVASGKGGVGKSTVAVNLALALARLGYKVGLLDAD--------------IYGPS---IPRmlGLEGERPEQSdggiipv 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2018021598 118 EITNLDVLTSGPIPPNPSELI---GS--TNMLDIFeeLKQQY----DFILVDTPPvNTvTDAQL--------FGEL---T 177
Cdd:pfam10609  69 EAHGIKVMSIGFLLPDEDDAViwrGPmkSGAIKQF--LTDVDwgelDYLIIDLPP-GT-GDEQLtlaqllplTGAVivtT 144

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2018021598 178 KNAIFIIDvesnnkesVKKGKELLEKSGTKILGAVLN 214
Cdd:pfam10609 145 PQDVALLD--------VRKAIDMFKKVNVPVLGVVEN 173
PHA02518 PHA02518
ParA-like protein; Provisional
 47-87 2.03e-03

ParA-like protein; Provisional


Pssm-ID: 222854 [Multi-domain]  Cd Length: 211  Bit Score: 38.29  E-value: 2.03e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2018021598  47 LLVTSDKPASGKSTVSANIAITYAQAGFKTLLIDGDMRKPT 87
Cdd:PHA02518    3 IAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSS 43
ArsA cd02035
Arsenical pump-driving ATPase ArsA; ArsA ATPase functions as an efflux pump located on the ...
 57-79 3.11e-03

Arsenical pump-driving ATPase ArsA; ArsA ATPase functions as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes, respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.


Pssm-ID: 349755 [Multi-domain]  Cd Length: 250  Bit Score: 37.87  E-value: 3.11e-03
                          10        20
                  ....*....|....*....|...
gi 2018021598  57 GKSTVSANIAITYAQAGFKTLLI 79
Cdd:cd02035    12 GKTTIAAATAVRLAEQGKRVLLV 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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