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Conserved domains on  [gi|2020425774|ref|WP_208726156|]
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phytoene desaturase [Pantoea phytobeneficialis]

Protein Classification

phytoene desaturase( domain architecture ID 11494953)

phytoene desaturase catalyzes the desaturation of phytoene to form zeta-carotene, all-trans-neurosporene, or lycopene, by the introduction of two, three, or four double bonds, respectively, during carotenoid biosynthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
crtI_fam TIGR02734
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 6-492 0e+00

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


:

Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 832.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAGPTVITDPSAIEALFTLAGKSLHDYVELMPVTP 85
Cdd:TIGR02734   3 VIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPLDP 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  86 FYRLCWEDGRRLDYDNHPQRLEQQIATFNPQDVAGYRQFLAYSREVFNEGYLKLGSVPFLSWRDMVRA-GPQLGRLQAWR 164
Cdd:TIGR02734  83 FYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRAdAPQLLALLAWR 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 165 SVYSMVAKFIRDDHLRQAFSFHSLLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVNGMVKLLQDLGGEVLLNAEV 244
Cdd:TIGR02734 163 SLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 245 QRLDITGDRISGVQLTDGRRFHAQAVASNADVVHTYNCLLAHHPAVAKRAAALKRKRMSNSLFVIYFGLN---QPHPQLA 321
Cdd:TIGR02734 243 IRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLgvdGHWPQLA 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 322 HHTVCFGPRYRQLINEIFNSGQLAEDFSLYLHAPSNSDPSLAPPGCASFYVLTPVPHLGTADIDWRQEGPRLRDRIFAYL 401
Cdd:TIGR02734 323 HHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCESLYVLAPVPHLGTADVDWSVEGPRYRDRILAYL 402

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 402 ETHYMPGLRSQLVTERMFTPFDFRDRLHAHHGSAFSLEPILTQSAWFRPHNRDDVIRNLYLVGAGTHPGAGVPGVIGSAK 481
Cdd:TIGR02734 403 EERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAK 482

                         490
                  ....*....|.
gi 2020425774 482 ATAQLMLEDLA 492
Cdd:TIGR02734 483 ATAKLMLGDLA 493
 
Name Accession Description Interval E-value
crtI_fam TIGR02734
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 6-492 0e+00

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 832.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAGPTVITDPSAIEALFTLAGKSLHDYVELMPVTP 85
Cdd:TIGR02734   3 VIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPLDP 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  86 FYRLCWEDGRRLDYDNHPQRLEQQIATFNPQDVAGYRQFLAYSREVFNEGYLKLGSVPFLSWRDMVRA-GPQLGRLQAWR 164
Cdd:TIGR02734  83 FYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRAdAPQLLALLAWR 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 165 SVYSMVAKFIRDDHLRQAFSFHSLLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVNGMVKLLQDLGGEVLLNAEV 244
Cdd:TIGR02734 163 SLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 245 QRLDITGDRISGVQLTDGRRFHAQAVASNADVVHTYNCLLAHHPAVAKRAAALKRKRMSNSLFVIYFGLN---QPHPQLA 321
Cdd:TIGR02734 243 IRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLgvdGHWPQLA 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 322 HHTVCFGPRYRQLINEIFNSGQLAEDFSLYLHAPSNSDPSLAPPGCASFYVLTPVPHLGTADIDWRQEGPRLRDRIFAYL 401
Cdd:TIGR02734 323 HHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCESLYVLAPVPHLGTADVDWSVEGPRYRDRILAYL 402

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 402 ETHYMPGLRSQLVTERMFTPFDFRDRLHAHHGSAFSLEPILTQSAWFRPHNRDDVIRNLYLVGAGTHPGAGVPGVIGSAK 481
Cdd:TIGR02734 403 EERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAK 482

                         490
                  ....*....|.
gi 2020425774 482 ATAQLMLEDLA 492
Cdd:TIGR02734 483 ATAKLMLGDLA 493
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 6-492 0e+00

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 549.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAGPTVITDPSAIEALFTLAGksLHDYVELMPVTP 85
Cdd:COG1233     8 VIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRARTFERPGFRFDVGPSVLTMPGVLERLFRELG--LEDYLELVPLDP 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  86 FYRLCWEDGRRLDYDNHPQRLEQQIATFNPQDVAGYRQFLAYSREVFNEGYLKLGSVPFLSWRDMVR--AGPQLGRLqAW 163
Cdd:COG1233    86 AYRVPFPDGRALDLPRDLERTAAELERLFPGDAEAYRRFLAELRRLYDALLEDLLYRPLLSLRDLLRplALARLLRL-LL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 164 RSVYSMVAKFIRDDHLRQAFSFHSLLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVNGMVKLLQDLGGEVLLNAE 243
Cdd:COG1233   165 RSLRDLLRRYFKDPRLRALLAGQALYLGLSPDRTPALYALIAYLEYAGGVWYPKGGMGALADALARLAEELGGEIRTGAE 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 244 VQRLDITGDRISGVQLTDGRRFHAQAVASNADVVHTYNCLLAHHPAVAKRAAALKRKRMSNSLFVIYFGLNQPHPQLAHH 323
Cdd:COG1233   245 VERILVEGGRATGVRLADGEEIRADAVVSNADPAHTYLRLLGEEALPARYRRRLERFRYSPSAFKLYLGLDGPLPGLAHH 324

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 324 TVCFGPRYRQLINEIFNsGQLAEDFSLYLHAPSNSDPSLAPPGCASFYVLTPVPHlGTADiDWRQEGPRLRDRIFAYLET 403
Cdd:COG1233   325 TIHLSEDYEAAFDDIFR-GRLPEDPSLYVSIPSLTDPSLAPEGKHTLWVLVPVPY-GLED-AWDELKEEYAERILARLER 401

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 404 HYmPGLRSQLVTERMFTPFDFRDRLHAHHGSAFSLEPILTQSAWFRPHNRDDVIRNLYLVGAGTHPGAGVPGVIGSAKAT 483
Cdd:COG1233   402 YA-PGLRDRIVAREVLTPLDFERYLNLVGGAIYGGAHTLDQSAFFRPSNYRTPIPGLYLVGASTHPGGGVPGVLISGRLA 480


                  ....*....
gi 2020425774 484 AQLMLEDLA 492
Cdd:COG1233   481 ARRILKDLK 489
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 11-488 6.31e-44

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 160.73  E-value: 6.31e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  11 FGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAGPTVITDPSAieALFTLAGK-SLHDYVELMPVTPFYRL 89
Cdd:pfam01593   1 LAGLAAARELLRAGHDVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHGAQP--PLLALLKElGLEDRLVLPDPAPFYTV 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  90 CWEDGRRLDYDnhpqrleqqiatFNPQDvAGYRQFLAYSREVFNEGYLKLGSVPFLSW------RDMVRAGPQLGRLQAW 163
Cdd:pfam01593  79 LFAGGRRYPGD------------FRRVP-AGWEGLLEFGRLLSIPEKLRLGLAALASDaldefdLDDFSLAESLLFLGRR 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 164 RSVYSMVAKFIRDDHLRQAFSFHSLLVGGNP---FATSSIYTLIHALEREWGVWFPRGGTGALVNGMVKLLqdLGGEVLL 240
Cdd:pfam01593 146 GPGDVEVWDRLIDPELFAALPFASGAFAGDPselSAGLALPLLWALLGEGGSLLLPRGGLGALPDALAAQL--LGGDVRL 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 241 NAEVQRLDITGDRISgVQLTDGRRFHAQAV--ASNADVVHTyNCLLAHHPAVAKRAAalkRKRMSNSLFVIYFGLNQPH- 317
Cdd:pfam01593 224 NTRVRSIDREGDGVT-VTLTDGEVIEADAVivTVPLGVLKR-ILFTPPLPPEKARAI---RNLGYGPVNKVHLEFDRKFw 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 318 PQLAHHtvcfgpryrQLINEIFNSGQLAEDFSLYlhapsnsdPSLAPPGcasfYVLTPVPHLGTADIDWRQEGprLRDRI 397
Cdd:pfam01593 299 PDLGLL---------GLLSELLTGLGTAFSWLTF--------PNRAPPG----KGLLLLVYVGPGDRARELEG--LSDEE 355

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 398 FAYLETHYMPGLRSQLVTE-RMFTPFDFRDRlhAHHGSAFSLEPILTQSAWFRPHNRdDVIRNLYLVGAGTHPG--AGVP 474
Cdd:pfam01593 356 LLQAVLRDLRKLFGEEAPEpLRVLVSDWHTD--PWPRGSYSLPQYGPGHDDYRPLAR-TPDPGLFFAGEHTSTGypGTVE 432

                         490
                  ....*....|....
gi 2020425774 475 GVIGSAKATAQLML 488
Cdd:pfam01593 433 GAIESGRRAARAVL 446
PRK07233 PRK07233
hypothetical protein; Provisional
 6-272 1.00e-07

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 54.12  E-value: 1.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAGPTVI--TDpsaiEALFTLAGK-SLHDYVELMP 82
Cdd:PRK07233    4 IVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIfkSD----EALLELLDElGLEDKLRWRE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  83 VTPFYrlcWEDGRRLDYDNhpqrleqqiatfnPqdvagyRQFLAYsrevfnegylklgsvPFLSWRDMVRAGP---QLGR 159
Cdd:PRK07233   80 TKTGY---YVDGKLYPLGT-------------P------LELLRF---------------PHLSLIDKFRLGLltlLARR 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 160 LQAWRSVYSM-VAKFIRDDHLRQAFS--FHSLLV---GGNPFATSS--IYTLIHAL-EREWGVW-----FPRGGTGALVN 225
Cdd:PRK07233  123 IKDWRALDKVpAEEWLRRWSGEGVYEvfWEPLLEskfGDYADDVSAawLWSRIKRRgNRRYSLFgeklgYLEGGFATLID 202

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2020425774 226 GMVKLLQDLGGEVLLNAEVQRLDITGDRISGVQlTDGRRFHAQAVAS 272
Cdd:PRK07233  203 ALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVE-VDGEEEDFDAVIS 248
 
Name Accession Description Interval E-value
crtI_fam TIGR02734
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 6-492 0e+00

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 832.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAGPTVITDPSAIEALFTLAGKSLHDYVELMPVTP 85
Cdd:TIGR02734   3 VIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPLDP 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  86 FYRLCWEDGRRLDYDNHPQRLEQQIATFNPQDVAGYRQFLAYSREVFNEGYLKLGSVPFLSWRDMVRA-GPQLGRLQAWR 164
Cdd:TIGR02734  83 FYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRAdAPQLLALLAWR 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 165 SVYSMVAKFIRDDHLRQAFSFHSLLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVNGMVKLLQDLGGEVLLNAEV 244
Cdd:TIGR02734 163 SLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 245 QRLDITGDRISGVQLTDGRRFHAQAVASNADVVHTYNCLLAHHPAVAKRAAALKRKRMSNSLFVIYFGLN---QPHPQLA 321
Cdd:TIGR02734 243 IRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLgvdGHWPQLA 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 322 HHTVCFGPRYRQLINEIFNSGQLAEDFSLYLHAPSNSDPSLAPPGCASFYVLTPVPHLGTADIDWRQEGPRLRDRIFAYL 401
Cdd:TIGR02734 323 HHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCESLYVLAPVPHLGTADVDWSVEGPRYRDRILAYL 402

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 402 ETHYMPGLRSQLVTERMFTPFDFRDRLHAHHGSAFSLEPILTQSAWFRPHNRDDVIRNLYLVGAGTHPGAGVPGVIGSAK 481
Cdd:TIGR02734 403 EERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAK 482

                         490
                  ....*....|.
gi 2020425774 482 ATAQLMLEDLA 492
Cdd:TIGR02734 483 ATAKLMLGDLA 493
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 6-492 0e+00

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 549.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAGPTVITDPSAIEALFTLAGksLHDYVELMPVTP 85
Cdd:COG1233     8 VIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRARTFERPGFRFDVGPSVLTMPGVLERLFRELG--LEDYLELVPLDP 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  86 FYRLCWEDGRRLDYDNHPQRLEQQIATFNPQDVAGYRQFLAYSREVFNEGYLKLGSVPFLSWRDMVR--AGPQLGRLqAW 163
Cdd:COG1233    86 AYRVPFPDGRALDLPRDLERTAAELERLFPGDAEAYRRFLAELRRLYDALLEDLLYRPLLSLRDLLRplALARLLRL-LL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 164 RSVYSMVAKFIRDDHLRQAFSFHSLLVGGNPFATSSIYTLIHALEREWGVWFPRGGTGALVNGMVKLLQDLGGEVLLNAE 243
Cdd:COG1233   165 RSLRDLLRRYFKDPRLRALLAGQALYLGLSPDRTPALYALIAYLEYAGGVWYPKGGMGALADALARLAEELGGEIRTGAE 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 244 VQRLDITGDRISGVQLTDGRRFHAQAVASNADVVHTYNCLLAHHPAVAKRAAALKRKRMSNSLFVIYFGLNQPHPQLAHH 323
Cdd:COG1233   245 VERILVEGGRATGVRLADGEEIRADAVVSNADPAHTYLRLLGEEALPARYRRRLERFRYSPSAFKLYLGLDGPLPGLAHH 324

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 324 TVCFGPRYRQLINEIFNsGQLAEDFSLYLHAPSNSDPSLAPPGCASFYVLTPVPHlGTADiDWRQEGPRLRDRIFAYLET 403
Cdd:COG1233   325 TIHLSEDYEAAFDDIFR-GRLPEDPSLYVSIPSLTDPSLAPEGKHTLWVLVPVPY-GLED-AWDELKEEYAERILARLER 401

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 404 HYmPGLRSQLVTERMFTPFDFRDRLHAHHGSAFSLEPILTQSAWFRPHNRDDVIRNLYLVGAGTHPGAGVPGVIGSAKAT 483
Cdd:COG1233   402 YA-PGLRDRIVAREVLTPLDFERYLNLVGGAIYGGAHTLDQSAFFRPSNYRTPIPGLYLVGASTHPGGGVPGVLISGRLA 480


                  ....*....
gi 2020425774 484 AQLMLEDLA 492
Cdd:COG1233   481 ARRILKDLK 489
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 11-488 6.31e-44

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 160.73  E-value: 6.31e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  11 FGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAGPTVITDPSAieALFTLAGK-SLHDYVELMPVTPFYRL 89
Cdd:pfam01593   1 LAGLAAARELLRAGHDVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHGAQP--PLLALLKElGLEDRLVLPDPAPFYTV 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  90 CWEDGRRLDYDnhpqrleqqiatFNPQDvAGYRQFLAYSREVFNEGYLKLGSVPFLSW------RDMVRAGPQLGRLQAW 163
Cdd:pfam01593  79 LFAGGRRYPGD------------FRRVP-AGWEGLLEFGRLLSIPEKLRLGLAALASDaldefdLDDFSLAESLLFLGRR 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 164 RSVYSMVAKFIRDDHLRQAFSFHSLLVGGNP---FATSSIYTLIHALEREWGVWFPRGGTGALVNGMVKLLqdLGGEVLL 240
Cdd:pfam01593 146 GPGDVEVWDRLIDPELFAALPFASGAFAGDPselSAGLALPLLWALLGEGGSLLLPRGGLGALPDALAAQL--LGGDVRL 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 241 NAEVQRLDITGDRISgVQLTDGRRFHAQAV--ASNADVVHTyNCLLAHHPAVAKRAAalkRKRMSNSLFVIYFGLNQPH- 317
Cdd:pfam01593 224 NTRVRSIDREGDGVT-VTLTDGEVIEADAVivTVPLGVLKR-ILFTPPLPPEKARAI---RNLGYGPVNKVHLEFDRKFw 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 318 PQLAHHtvcfgpryrQLINEIFNSGQLAEDFSLYlhapsnsdPSLAPPGcasfYVLTPVPHLGTADIDWRQEGprLRDRI 397
Cdd:pfam01593 299 PDLGLL---------GLLSELLTGLGTAFSWLTF--------PNRAPPG----KGLLLLVYVGPGDRARELEG--LSDEE 355

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 398 FAYLETHYMPGLRSQLVTE-RMFTPFDFRDRlhAHHGSAFSLEPILTQSAWFRPHNRdDVIRNLYLVGAGTHPG--AGVP 474
Cdd:pfam01593 356 LLQAVLRDLRKLFGEEAPEpLRVLVSDWHTD--PWPRGSYSLPQYGPGHDDYRPLAR-TPDPGLFFAGEHTSTGypGTVE 432

                         490
                  ....*....|....
gi 2020425774 475 GVIGSAKATAQLML 488
Cdd:pfam01593 433 GAIESGRRAARAVL 446
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 1-491 8.18e-21

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 94.90  E-value: 8.18e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   1 MNRTFVIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAGP-TVITDPSAIEALFTLAGksLHDyvE 79
Cdd:COG1232     1 MKRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGGLIRTVEVDGFRIDRGPhSFLTRDPEVLELLRELG--LGD--E 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  80 LMPVTPFYRLCWEDGRRLDYdnhPQrleqqiatfnpqdvaGYRQFLAYsrevfnegylklgsvPFLSWRDMVRAGPQLGR 159
Cdd:COG1232    77 LVWPNTRKSYIYYGGKLHPL---PQ---------------GPLALLRS---------------PLLSLAGKLRALLELLA 123

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 160 LQAWRSVYSMVAKFIRD-------DHLrqAFSFHSLLVGGNPFATS--SIYTLIHALEREWG------------------ 212
Cdd:COG1232   124 PRRPPGEDESLAEFVRRrfgrevyERL--VEPLLEGVYAGDPDELSadWAFPRLKRLELEHGslikgalalrkgakagev 201

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 213 VWFPRGGTGALVNGMVKLLQDlgGEVLLNAEVQRLDITGDRIsGVQLTDGRRFHAQAVASNADVVHTYNCLLAHHPAVAK 292
Cdd:COG1232   202 FGYLRGGLGTLVEALAEALEA--GEIRLGTRVTAIEREGGGW-RVTTSDGETIEADAVVSATPAPALARLLAPLPPEVAA 278

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 293 RAAALKrkrmSNSLFVIYFGLnqPHPQLAHHtVCFG---PRyrqlineifnsgqlAEDFSLY-LHAPSNSDPSLAPPGCA 368
Cdd:COG1232   279 ALAGIP----YASVAVVALGF--DRPDLPPP-DGFGwlvPR--------------DEGVPILaVTFSSNKWPHRAPDGKV 337

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 369 SFYVLtpVPHLGTADIdWRQEGPRLRDRIFAYLETHYmpGLRSQLV---TERM------FTPfDFRDRLHAhhgsafsLE 439
Cdd:COG1232   338 LLRLE--VGGAGDPEL-WQLSDEELVALALADLRKLL--GIDAEPVdtrVVRWpkaypqYTV-GHLERVAA-------IR 404

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2020425774 440 PILTQsawfrphnrddvIRNLYLVGAGtHPGAGVPGVIGSAKATAQLMLEDL 491
Cdd:COG1232   405 EALAA------------LPGLYLAGRA-YDGVGLPDCIRSGREAAERILAEL 443
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 6-270 1.88e-18

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 87.60  E-value: 1.88e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQ--GFTFDAGPTVItdPSAIEALFtlagkslhDYVELMPV 83
Cdd:COG3349     8 VVGGGLAGLAAAVELAEAGFRVTLLEARPRLGGRARSFPDPdtGLPIDNGQHVL--LGCYRNTL--------DLLRRIGA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  84 TPfyRLCWEDgrRLDYDNHpqrlEQQIATFNPQDV-AGYRQFLAYSRevfnegylklgsVPFLSWRDMVRAGPQL--GRL 160
Cdd:COG3349    78 AD--NLVGPE--PLQFPLP----GGRRWTLRAPRLpAPLHLLRALLR------------APGLSLADRLALLRLLtaCRE 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 161 QAWRSVYSM-VAKFIRD----DHLRQAFsFHSLLVGG-N-PFATSS-------IYTLIHALEREWGVWFPRGGTGAL-VN 225
Cdd:COG3349   138 RRWRELDDIsVADWLRRhgqsPRLIRRL-WEPLLLAAlNtPPEQASarlaltvLRETLLAGPAASDLLVPRGPLSELfVD 216

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2020425774 226 GMVKLLQDLGGEVLLNAEVQRLDITGDRISGVQLTDGRRFHAQAV 270
Cdd:COG3349   217 PALAYLEARGGEVRLGTRVRALEFDGGRVTGLVLADGETVPADAV 261
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
6-270 4.31e-17

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 83.43  E-value: 4.31e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRayVW----QDQGFTFDAGPTVItdPSAIEALFTLAGkslhdyvEL- 80
Cdd:COG1231    12 IVGAGLAGLAAARELRKAGLDVTVLEARDRVGGR--VWtlrfGDDGLYAELGAMRI--PPSHTNLLALAR-------ELg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  81 MPVTPFYRLCWEDgrRLDYDNHPQRLEQQIAtfnpqDVAGYRQFLAysrevfnegylklgsvpfLSWRDMVRA-GPQLGR 159
Cdd:COG1231    81 LPLEPFPNENGNA--LLYLGGKRVRAGEIAA-----DLRGVAELLA------------------KLLRALAAAlDPWAHP 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 160 LQAW--RSVYSMVAKFIRDDHLRQAFSFHSLLV-GGNPFATSSIYTLIHALEREWGV--WFPRGGTGALVNGMVKllqDL 234
Cdd:COG1231   136 AAELdrESLAEWLRRNGASPSARRLLGLLGAGEyGADPDELSLLDLLRYAASAGGGAqqFRIVGGMDQLPRALAA---EL 212

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2020425774 235 GGEVLLNAEVQRLDITGDRISgVQLTDGRRFHAQAV 270
Cdd:COG1231   213 GDRIRLGAPVTRIRQDGDGVT-VTTDDGGTVRADAV 247
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
6-61 5.30e-12

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 61.01  E-value: 5.30e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAGPTVITDPS 61
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAYSYRVPGYVFDYGAHIFHGSD 56
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
6-274 1.15e-08

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 56.84  E-value: 1.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDkPGGRAyvwqdqgfTFDAG---PTVITDPsAIEALFTLAGKSLHDYVELMp 82
Cdd:COG0665     7 VIGGGIAGLSTAYHLARRGLDVTVLERGR-PGSGA--------SGRNAgqlRPGLAAL-ADRALVRLAREALDLWRELA- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  83 vtpfyrlcwedgRRLDYDnhpqrleqqiatfnpqdvAGYRQflaysrevfnEGYLKLGSVPflswrdmvRAGPQLGRLQA 162
Cdd:COG0665    76 ------------AELGID------------------CDFRR----------TGVLYLARTE--------AELAALRAEAE 107

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 163 WRSVYSMVAKFIRDDHLRQAFSFhsllVGGNPFATssiytlihalerewGVWFPRGGT---GALVNGMVKLLQDLGGEVL 239
Cdd:COG0665   108 ALRALGLPVELLDAAELREREPG----LGSPDYAG--------------GLYDPDDGHvdpAKLVRALARAARAAGVRIR 169

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 2020425774 240 LNAEVQRLDITGDRISGVQLTDGrRFHAQAV--ASNA 274
Cdd:COG0665   170 EGTPVTGLEREGGRVTGVRTERG-TVRADAVvlAAGA 205
PRK07233 PRK07233
hypothetical protein; Provisional
 6-272 1.00e-07

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 54.12  E-value: 1.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAGPTVI--TDpsaiEALFTLAGK-SLHDYVELMP 82
Cdd:PRK07233    4 IVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIfkSD----EALLELLDElGLEDKLRWRE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  83 VTPFYrlcWEDGRRLDYDNhpqrleqqiatfnPqdvagyRQFLAYsrevfnegylklgsvPFLSWRDMVRAGP---QLGR 159
Cdd:PRK07233   80 TKTGY---YVDGKLYPLGT-------------P------LELLRF---------------PHLSLIDKFRLGLltlLARR 122

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 160 LQAWRSVYSM-VAKFIRDDHLRQAFS--FHSLLV---GGNPFATSS--IYTLIHAL-EREWGVW-----FPRGGTGALVN 225
Cdd:PRK07233  123 IKDWRALDKVpAEEWLRRWSGEGVYEvfWEPLLEskfGDYADDVSAawLWSRIKRRgNRRYSLFgeklgYLEGGFATLID 202

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2020425774 226 GMVKLLQDLGGEVLLNAEVQRLDITGDRISGVQlTDGRRFHAQAVAS 272
Cdd:PRK07233  203 ALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVE-VDGEEEDFDAVIS 248
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 6-45 2.85e-07

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 52.56  E-value: 2.85e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGrayVWQD 45
Cdd:COG2072    11 VIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGG---TWRD 47
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
1-40 5.05e-06

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 48.34  E-value: 5.05e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2020425774   1 MNRTFVIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRA 40
Cdd:COG3380     3 MPDIAIIGAGIAGLAAARALQDAGHEVTVFEKSRGVGGRM 42
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 6-260 8.12e-06

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 47.78  E-value: 8.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAyvwqdqgfTFDagptvitdpsaiealftlAGKSLHDYVELMPVTP 85
Cdd:pfam01266   4 VIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGA--------SGR------------------NAGLIHPGLRYLEPSE 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774  86 FYRLCWEdGRRLdydnhpqrLEQQIATFNPQdvAGYRQ----FLAYSREvfnegylklgsvpflswrdmvraGPQLGRLQ 161
Cdd:pfam01266  58 LARLALE-ALDL--------WEELEEELGID--CGFRRcgvlVLARDEE-----------------------EEALEKLL 103

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774 162 AWRSVYSMVAKFIRDDHLRQAFSFHSLLVGgnpfatssiytlihalerewGVWFPRGGT---GALVNGMVKLLQDLGGEV 238
Cdd:pfam01266 104 AALRRLGVPAELLDAEELRELEPLLPGLRG--------------------GLFYPDGGHvdpARLLRALARAAEALGVRI 163

                         250       260
                  ....*....|....*....|..
gi 2020425774 239 LLNAEVQRLDITGDrISGVQLT 260
Cdd:pfam01266 164 IEGTEVTGIEEEGG-VWGVVTT 184
PLN03000 PLN03000
amine oxidase
 6-100 9.18e-06

amine oxidase


Pssm-ID: 178578 [Multi-domain]  Cd Length: 881  Bit Score: 48.48  E-value: 9.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQ----DQGFTFDAGPTVIT----DPSAIEAlfTLAGKSLHdy 77
Cdd:PLN03000  189 IVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKmeanRVGAAADLGGSVLTgtlgNPLGIIA--RQLGSSLY-- 264

                          90       100
                  ....*....|....*....|...
gi 2020425774  78 vELMPVTPFYRLcweDGRRLDYD 100
Cdd:PLN03000  265 -KVRDKCPLYRV---DGKPVDPD 283
PLN02268 PLN02268
probable polyamine oxidase
 6-53 2.24e-05

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 46.60  E-value: 2.24e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVWQDQGFTFDAG 53
Cdd:PLN02268    5 VIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMG 52
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 6-47 5.23e-05

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 45.31  E-value: 5.23e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHD--KPGGRAYVWQDQG 47
Cdd:COG0654     8 IVGGGPAGLALALALARAGIRVTVVERAPppRPDGRGIALSPRS 51
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 6-38 9.74e-05

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 44.78  E-value: 9.74e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGG 38
Cdd:PRK11749  145 VIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
 6-54 1.94e-04

protoporphyrinogen oxidase; Reviewed


Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 43.68  E-value: 1.94e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2020425774   6 VIGAGFGGLALAIRLQAAG--IATTVLEQHDKPGGRAYVWQDQGFTFDAGP 54
Cdd:PRK11883    5 IIGGGITGLSAAYRLHKKGpdADITLLEASDRLGGKIQTVRKDGFPIELGP 55
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 6-38 4.41e-04

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 42.43  E-value: 4.41e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGG 38
Cdd:COG0493   126 VVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
PRK06847 PRK06847
hypothetical protein; Provisional
 1-41 4.84e-04

hypothetical protein; Provisional


Pssm-ID: 235874 [Multi-domain]  Cd Length: 375  Bit Score: 42.55  E-value: 4.84e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2020425774   1 MNRTFVIGAGFGGLALAIRLQAAGIATTVLEQhdKPGGRAY 41
Cdd:PRK06847    4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEI--DPEWRVY 42
PLN02529 PLN02529
lysine-specific histone demethylase 1
 6-58 5.79e-04

lysine-specific histone demethylase 1


Pssm-ID: 178144 [Multi-domain]  Cd Length: 738  Bit Score: 42.57  E-value: 5.79e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAYVW----QDQGFTFDAGPTVIT 58
Cdd:PLN02529  165 IVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQkmgrKGQFAAVDLGGSVIT 221
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
 6-40 9.30e-04

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 41.76  E-value: 9.30e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRA 40
Cdd:PRK01747  265 IIGGGIAGAALALALARRGWQVTLYEADEAPAQGA 299
PLN02576 PLN02576
protoporphyrinogen oxidase
 6-54 1.26e-03

protoporphyrinogen oxidase


Pssm-ID: 215314 [Multi-domain]  Cd Length: 496  Bit Score: 41.15  E-value: 1.26e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2020425774   6 VIGAGFGGLALAIRLQAA-GIATTVLEQHDKPGGRAYVWQDQGFTFDAGP 54
Cdd:PLN02576   17 VVGAGVSGLAAAYALASKhGVNVLVTEARDRVGGNITSVSEDGFIWEEGP 66
gltD PRK12810
glutamate synthase subunit beta; Reviewed
 6-38 2.21e-03

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 40.53  E-value: 2.21e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQHDKPGG 38
Cdd:PRK12810  148 VVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
PRK07538 PRK07538
hypothetical protein; Provisional
 6-32 3.14e-03

hypothetical protein; Provisional


Pssm-ID: 236046 [Multi-domain]  Cd Length: 413  Bit Score: 39.88  E-value: 3.14e-03
                          10        20
                  ....*....|....*....|....*..
gi 2020425774   6 VIGAGFGGLALAIRLQAAGIATTVLEQ 32
Cdd:PRK07538    5 IAGGGIGGLTLALTLHQRGIEVVVFEA 31
PLN02976 PLN02976
amine oxidase
 3-41 3.58e-03

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 40.24  E-value: 3.58e-03
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2020425774    3 RTFVIGAGFGGLALAIRLQAAGIATTVLEQHDKPGGRAY 41
Cdd:PLN02976   695 KIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVY 733
PRK00711 PRK00711
D-amino acid dehydrogenase;
225-270 5.54e-03

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 39.01  E-value: 5.54e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2020425774 225 NGMVKLLQDLGGEVLLNAEVQRLDITGDRISGVQlTDGRRFHAQAV 270
Cdd:PRK00711  205 QRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQ-TGGGVITADAY 249
PRK06753 PRK06753
hypothetical protein; Provisional
 2-66 7.22e-03

hypothetical protein; Provisional


Pssm-ID: 168661 [Multi-domain]  Cd Length: 373  Bit Score: 38.52  E-value: 7.22e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2020425774   2 NRTFVIGAGFGGLALAIRLQAAGIATTVLEQHDKPGgrayvwqdqgftfDAGPTVITDPSAIEAL 66
Cdd:PRK06753    1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK-------------EVGAGIGIGDNVIKKL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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