GTA TIM-barrel-like domain; This domain is found in the gene transfer agent protein. An ...
378-672
3.07e-163
GTA TIM-barrel-like domain; This domain is found in the gene transfer agent protein. An unusual system of genetic exchange exists in the purple nonsulfur bacterium Rhodobacter capsulatus. DNA transmission is mediated by a small bacteriophage-like particle called the gene transfer agent (GTA) that transfers random 4.5-kb segments of the producing cell's genome to recipient cells, where allelic replacement occurs. The genes involved in this process appear to be found widely in bacteria. According to the SUPERFAMILY database this domain has a TIM barrel fold.
:
Pssm-ID: 433297 Cd Length: 298 Bit Score: 487.16 E-value: 3.07e-163
Putative phage tail protein; This putative domain is found in the large gene transfer agent ...
731-885
4.83e-20
Putative phage tail protein; This putative domain is found in the large gene transfer agent protein. These produce defective phage like particles. This domain is similar to other phage-tail protein families.
:
Pssm-ID: 433300 [Multi-domain] Cd Length: 163 Bit Score: 88.53 E-value: 4.83e-20
GTA TIM-barrel-like domain; This domain is found in the gene transfer agent protein. An ...
378-672
3.07e-163
GTA TIM-barrel-like domain; This domain is found in the gene transfer agent protein. An unusual system of genetic exchange exists in the purple nonsulfur bacterium Rhodobacter capsulatus. DNA transmission is mediated by a small bacteriophage-like particle called the gene transfer agent (GTA) that transfers random 4.5-kb segments of the producing cell's genome to recipient cells, where allelic replacement occurs. The genes involved in this process appear to be found widely in bacteria. According to the SUPERFAMILY database this domain has a TIM barrel fold.
Pssm-ID: 433297 Cd Length: 298 Bit Score: 487.16 E-value: 3.07e-163
Putative glycoside hydrolase TIM-barrel domain in gene transfer agent and similar proteins; ...
248-711
1.38e-140
Putative glycoside hydrolase TIM-barrel domain in gene transfer agent and similar proteins; This domain is found in the gene transfer agent protein, such as the Rhodobacter capsulatus putative gene transfer agent protein encoded by orfg15. In the purple nonsulfur bacterium Rhodobacter capsulatus, DNA transmission is mediated via an unusual system, a small bacteriophage-like particle called the gene transfer agent (GTA) that transfers random 4.5-kb segments of the producing cell's genome to recipient cells, where allelic replacement occurs.
Pssm-ID: 381625 Cd Length: 438 Bit Score: 433.45 E-value: 1.38e-140
Putative phage tail protein; This putative domain is found in the large gene transfer agent ...
731-885
4.83e-20
Putative phage tail protein; This putative domain is found in the large gene transfer agent protein. These produce defective phage like particles. This domain is similar to other phage-tail protein families.
Pssm-ID: 433300 [Multi-domain] Cd Length: 163 Bit Score: 88.53 E-value: 4.83e-20
GTA TIM-barrel-like domain; This domain is found in the gene transfer agent protein. An ...
378-672
3.07e-163
GTA TIM-barrel-like domain; This domain is found in the gene transfer agent protein. An unusual system of genetic exchange exists in the purple nonsulfur bacterium Rhodobacter capsulatus. DNA transmission is mediated by a small bacteriophage-like particle called the gene transfer agent (GTA) that transfers random 4.5-kb segments of the producing cell's genome to recipient cells, where allelic replacement occurs. The genes involved in this process appear to be found widely in bacteria. According to the SUPERFAMILY database this domain has a TIM barrel fold.
Pssm-ID: 433297 Cd Length: 298 Bit Score: 487.16 E-value: 3.07e-163
Putative glycoside hydrolase TIM-barrel domain in gene transfer agent and similar proteins; ...
248-711
1.38e-140
Putative glycoside hydrolase TIM-barrel domain in gene transfer agent and similar proteins; This domain is found in the gene transfer agent protein, such as the Rhodobacter capsulatus putative gene transfer agent protein encoded by orfg15. In the purple nonsulfur bacterium Rhodobacter capsulatus, DNA transmission is mediated via an unusual system, a small bacteriophage-like particle called the gene transfer agent (GTA) that transfers random 4.5-kb segments of the producing cell's genome to recipient cells, where allelic replacement occurs.
Pssm-ID: 381625 Cd Length: 438 Bit Score: 433.45 E-value: 1.38e-140
Glycoside hydrolase family 113 beta-mannosidase and similar proteins; Family 113 glycoside ...
255-693
1.69e-31
Glycoside hydrolase family 113 beta-mannosidase and similar proteins; Family 113 glycoside hydrolases cleave (1->4)-beta-glycosidic linkages, such as endo-1,4-beta-mannanase. This family also includes TIM-barrel domains found in gene transfer agent proteins.
Pssm-ID: 381624 Cd Length: 303 Bit Score: 125.79 E-value: 1.69e-31
Putative phage tail protein; This putative domain is found in the large gene transfer agent ...
731-885
4.83e-20
Putative phage tail protein; This putative domain is found in the large gene transfer agent protein. These produce defective phage like particles. This domain is similar to other phage-tail protein families.
Pssm-ID: 433300 [Multi-domain] Cd Length: 163 Bit Score: 88.53 E-value: 4.83e-20
Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins; Mannan endo-1,4-beta ...
315-486
1.25e-16
Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins; Mannan endo-1,4-beta mannosidase (E.C 3.2.1.78) randomly cleaves (1->4)-beta-D-mannosidic linkages in mannans, galactomannans and glucomannans and is also called beta-1,4-mannanase, endo-1,4-beta-mannanase, endo-beta-1,4-mannase, beta-mannanase B, beta-1, 4-mannan 4-mannanohydrolase, endo-beta-mannanase, beta-D-mannanase, 1,4-beta-D-mannan mannanohydrolase, and 4-beta-D-mannan mannanohydrolase. (1->4)-beta-linked mannans are polysaccharides with a linear polymer backbone of (1->4)-beta-linked mannose units (in plants and fungi) or alternating mannose and glucose/galactose units (glucomannan in plants and fungi, and galactomannan and galactoglucomannan in plants), such as in the hemicellulose fraction of hard- and softwoods. Complete degradation of mannan requires a series of enzymes, including beta-1,4-mannanase. According to the CAZy database beta-1,4-mannanases are grouped into various glycoside hydrolase (GH) families; GH family 113 beta-1,4-mannanases include mostly bacterial and archaeal sequences.
Pssm-ID: 381626 Cd Length: 310 Bit Score: 82.43 E-value: 1.25e-16
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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