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Conserved domains on  [gi|2039925203|ref|WP_212824768|]
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ATP-dependent chaperone ClpB [Polymorphospora rubra]

Protein Classification

ATP-dependent Clp protease ATP-binding subunit( domain architecture ID 11425426)

ClpA/ClpB family ATP-dependent Clp protease ATP-binding subunit is a component of the Clp chaperone-protease complex that is involved in protein degradation and disaggregation

CATH:  1.10.1780.10
Gene Ontology:  GO:0005524|GO:0016887

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
1-855 0e+00

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 1344.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203   1 MNAERLTTKSREVITGAVAIASQRGHATVEPWHLLLSLLDTGGSTAGGLLRAVGANPVEVRRAAARAVENLPAARGSSvA 80
Cdd:COG0542     1 MNFEKFTEKAQEALEAAQELARRLGHQEVEPEHLLLALLEQGEGLAAKLLRKLGVDLDALREELEEALGRLPKVSGSS-G 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  81 EPSLAREFANAIGAAEQIARPLGDEYTSTEHLLAGLARVG-GAVAQALKAAGATEENLVAAFPAVRGGdRRVTTADPEQT 159
Cdd:COG0542    80 QPYLSPRLKRVLELAELEARKLGDEYISTEHLLLALLREGeGVAARILKKLGITLEALREALEELRGG-SRVTSQNPESK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 160 YQALEKYGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKL 239
Cdd:COG0542   159 TPALDKYGRDLTELAREGKLDPVIGRDEEIRRVIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRV 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 240 VSLDLGAMVAGAQYRGQFEERLKSVLEEIRGSDGQVITFLDELHTVVGAGKGEGSMDAGNMLKPMLARGELRMVGATTLD 319
Cdd:COG0542   239 LSLDLGALVAGAKYRGEFEERLKAVLDEVKKSEGNIILFIDELHTLVGAGGAEGAMDAANLLKPALARGELRCIGATTLD 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 320 EYRAHIEKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFLPDKAIDLVDES 399
Cdd:COG0542   319 EYRKYIEKDAALERRFQPVLVEEPSVEDTISILRGLKERYEAHHGVRITDEALVAAVRLSDRYITDRFLPDKAIDLIDEA 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 400 ASRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDVASAERLERLRKELADRREQLTALSDRWHLEKDHITRISTAKE 479
Cdd:COG0542   399 AARVRMEIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKE 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 480 ELERlggeaeraerdgeleraaelRYGRIPTLQGELKRAETElvgLQADGAMLKEEVGADDIAAVVASWTGIPAGRLLEG 559
Cdd:COG0542   479 ELEQ--------------------RYGKIPELEKELAELEEE---LAELAPLLREEVTEEDIAEVVSRWTGIPVGKLLEG 535
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 560 ETAKLLRMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRIDM 639
Cdd:COG0542   536 EREKLLNLEEELHERVIGQDEAVEAVADAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTELAKALAEFLFGDEDALIRIDM 615
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 640 SEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNAIL 719
Cdd:COG0542   616 SEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTII 695
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 720 ILTSNLGSAMIADPT---LTEEQRREEVLAVVRTHFKPEFLNRLDDIVVFSSLTGDELRSIVDIQLTRMRRRLADRRLTL 796
Cdd:COG0542   696 IMTSNIGSELILDLAedePDYEEMKEAVMEELKKHFRPEFLNRIDEIIVFHPLSKEELRKIVDLQLKRLRKRLAERGITL 775
                         810       820       830       840       850
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2039925203 797 DVSDDARTWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVRVDLAESK 855
Cdd:COG0542   776 ELTDAAKDFLAEKGYDPEYGARPLKRAIQRELEDPLAEEILAGEIKEGDTITVDVDDGE 834
 
Name Accession Description Interval E-value
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
1-855 0e+00

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 1344.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203   1 MNAERLTTKSREVITGAVAIASQRGHATVEPWHLLLSLLDTGGSTAGGLLRAVGANPVEVRRAAARAVENLPAARGSSvA 80
Cdd:COG0542     1 MNFEKFTEKAQEALEAAQELARRLGHQEVEPEHLLLALLEQGEGLAAKLLRKLGVDLDALREELEEALGRLPKVSGSS-G 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  81 EPSLAREFANAIGAAEQIARPLGDEYTSTEHLLAGLARVG-GAVAQALKAAGATEENLVAAFPAVRGGdRRVTTADPEQT 159
Cdd:COG0542    80 QPYLSPRLKRVLELAELEARKLGDEYISTEHLLLALLREGeGVAARILKKLGITLEALREALEELRGG-SRVTSQNPESK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 160 YQALEKYGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKL 239
Cdd:COG0542   159 TPALDKYGRDLTELAREGKLDPVIGRDEEIRRVIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRV 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 240 VSLDLGAMVAGAQYRGQFEERLKSVLEEIRGSDGQVITFLDELHTVVGAGKGEGSMDAGNMLKPMLARGELRMVGATTLD 319
Cdd:COG0542   239 LSLDLGALVAGAKYRGEFEERLKAVLDEVKKSEGNIILFIDELHTLVGAGGAEGAMDAANLLKPALARGELRCIGATTLD 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 320 EYRAHIEKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFLPDKAIDLVDES 399
Cdd:COG0542   319 EYRKYIEKDAALERRFQPVLVEEPSVEDTISILRGLKERYEAHHGVRITDEALVAAVRLSDRYITDRFLPDKAIDLIDEA 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 400 ASRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDVASAERLERLRKELADRREQLTALSDRWHLEKDHITRISTAKE 479
Cdd:COG0542   399 AARVRMEIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKE 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 480 ELERlggeaeraerdgeleraaelRYGRIPTLQGELKRAETElvgLQADGAMLKEEVGADDIAAVVASWTGIPAGRLLEG 559
Cdd:COG0542   479 ELEQ--------------------RYGKIPELEKELAELEEE---LAELAPLLREEVTEEDIAEVVSRWTGIPVGKLLEG 535
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 560 ETAKLLRMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRIDM 639
Cdd:COG0542   536 EREKLLNLEEELHERVIGQDEAVEAVADAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTELAKALAEFLFGDEDALIRIDM 615
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 640 SEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNAIL 719
Cdd:COG0542   616 SEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTII 695
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 720 ILTSNLGSAMIADPT---LTEEQRREEVLAVVRTHFKPEFLNRLDDIVVFSSLTGDELRSIVDIQLTRMRRRLADRRLTL 796
Cdd:COG0542   696 IMTSNIGSELILDLAedePDYEEMKEAVMEELKKHFRPEFLNRIDEIIVFHPLSKEELRKIVDLQLKRLRKRLAERGITL 775
                         810       820       830       840       850
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2039925203 797 DVSDDARTWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVRVDLAESK 855
Cdd:COG0542   776 ELTDAAKDFLAEKGYDPEYGARPLKRAIQRELEDPLAEEILAGEIKEGDTITVDVDDGE 834
chaperone_ClpB TIGR03346
ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent ...
6-851 0e+00

ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization]


Pssm-ID: 274529 [Multi-domain]  Cd Length: 850  Bit Score: 1298.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203   6 LTTKSREVITGAVAIASQRGHATVEPWHLLLSLLDTGGSTAGGLLRAVGANPVEVRRAAARAVENLPAARGSsVAEPSLA 85
Cdd:TIGR03346   1 LTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARPLLQKAGVNVGALRQALEKELERLPKVSGP-GGQVYLS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  86 REFANAIGAAEQIARPLGDEYTSTEHLLAGLARVGGAVAQALKAAGATEENLVAAFPAVRGGdRRVTTADPEQTYQALEK 165
Cdd:TIGR03346  80 PDLNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGTLGKLLKEAGATADALEAAINAVRGG-QKVTDANAEDQYEALEK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 166 YGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKLVSLDLG 245
Cdd:TIGR03346 159 YARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPEGLKNKRLLALDMG 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 246 AMVAGAQYRGQFEERLKSVLEEIRGSDGQVITFLDELHTVVGAGKGEGSMDAGNMLKPMLARGELRMVGATTLDEYRAHI 325
Cdd:TIGR03346 239 ALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYI 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 326 EKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFLPDKAIDLVDESASRLRM 405
Cdd:TIGR03346 319 EKDAALERRFQPVFVDEPSVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRM 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 406 EIDSRPVEVDEIERAVRRLEIEEMALAKEPDVASAERLERLRKELADRREQLTALSDRWHLEKDHITRISTAKEELERLG 485
Cdd:TIGR03346 399 EIDSKPEELDELDRRIIQLEIEREALKKEKDEASKKRLEDLEKELADLEEEYAELEEQWKAEKASIQGIQQIKEEIEQVR 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 486 GEAERAERDGELERAAELRYGRIPTLQGELKRAETELVglQADGAMLKEEVGADDIAAVVASWTGIPAGRLLEGETAKLL 565
Cdd:TIGR03346 479 LELEQAEREGDLAKAAELQYGKLPELEKQLQAAEQKLG--EEQNRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLL 556
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 566 RMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRIDMSEYGEK 645
Cdd:TIGR03346 557 HMEEELHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDSEDAMVRIDMSEYMEK 636
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 646 HSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNAILILTSNL 725
Cdd:TIGR03346 637 HSVARLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 716
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 726 GSAMIADPTLTE--EQRREEVLAVVRTHFKPEFLNRLDDIVVFSSLTGDELRSIVDIQLTRMRRRLADRRLTLDVSDDAR 803
Cdd:TIGR03346 717 GSDFIQELAGGDdyEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAAL 796
                         810       820       830       840
                  ....*....|....*....|....*....|....*....|....*...
gi 2039925203 804 TWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVRVDL 851
Cdd:TIGR03346 797 DFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVAPGDTIRVDV 844
PRK10865 PRK10865
ATP-dependent chaperone ClpB;
1-851 0e+00

ATP-dependent chaperone ClpB;


Pssm-ID: 182791 [Multi-domain]  Cd Length: 857  Bit Score: 945.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203   1 MNAERLTTKSREVITGAVAIASQRGHATVEPWHLLLSLLDTGGSTAGGLLRAVGANPVEVRRAAARAVENLPAARGSSvA 80
Cdd:PRK10865    1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQVEGTG-G 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  81 EPSLAREFANAIGAAEQIARPLGDEYTSTEHLLAGLARVGGAVAQALKAAGATEENLVAAFPAVRGGDRrVTTADPEQTY 160
Cdd:PRK10865   80 DVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGES-VNDQGAEDQR 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 161 QALEKYGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKLV 240
Cdd:PRK10865  159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 241 SLDLGAMVAGAQYRGQFEERLKSVLEEIRGSDGQVITFLDELHTVVGAGKGEGSMDAGNMLKPMLARGELRMVGATTLDE 320
Cdd:PRK10865  239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 321 YRAHIEKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFLPDKAIDLVDESA 400
Cdd:PRK10865  319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAA 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 401 SRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDVASAERLERLRKELADRREQLTALSDRWHLEKDHITRISTAKEE 480
Cdd:PRK10865  399 SSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAE 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 481 LERLGGEAERAERDGELERAAELRYGRIPTLQGELKRAEtelvglQADGA---MLKEEVGADDIAAVVASWTGIPAGRLL 557
Cdd:PRK10865  479 LEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAAT------QLEGKtmrLLRNKVTDAEIAEVLARWTGIPVSRML 552
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 558 EGETAKLLRMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRI 637
Cdd:PRK10865  553 ESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRI 632
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 638 DMSEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNA 717
Cdd:PRK10865  633 DMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 718 ILILTSNLGSAMIADP--TLTEEQRREEVLAVVRTHFKPEFLNRLDDIVVFSSLTGDELRSIVDIQLTRMRRRLADRRLT 795
Cdd:PRK10865  713 VVIMTSNLGSDLIQERfgELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYE 792
                         810       820       830       840       850
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2039925203 796 LDVSDDARTWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVRVDL 851
Cdd:PRK10865  793 IHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEV 848
RecA-like_ClpB_Hsp104-like cd19499
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ...
563-766 2.11e-104

Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410907 [Multi-domain]  Cd Length: 178  Bit Score: 319.89  E-value: 2.11e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 563 KLLRMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRIDMSEY 642
Cdd:cd19499     1 KLLNLEERLHERVVGQDEAVKAVSDAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 643 GEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNAILILT 722
Cdd:cd19499    81 MEKHSVSRLIGAPPGYVGYTEGGQLTEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRLTDSHGRTVDFKNTIIIMT 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2039925203 723 SNlgsamiadptlteeqrreevlavvrtHFKPEFLNRLDDIVVF 766
Cdd:cd19499   161 SN--------------------------HFRPEFLNRIDEIVVF 178
AAA_2 pfam07724
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ...
601-763 9.80e-91

AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400187 [Multi-domain]  Cd Length: 168  Bit Score: 283.70  E-value: 9.80e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 601 RPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRIDMSEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVL 680
Cdd:pfam07724   1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 681 LDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNAILILTSNLGSAMIAD-----PTLTEEQRREEVLAVVRTHFKPE 755
Cdd:pfam07724  81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGNFGSEKISDasrlgDSPDYELLKEEVMDLLKKGFIPE 160

                  ....*...
gi 2039925203 756 FLNRLDDI 763
Cdd:pfam07724 161 FLGRLPII 168
ClpB_D2-small smart01086
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ...
769-855 1.43e-18

C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly. The domain is associated with two Clp_N at the N-terminus as well as AAA and AAA_2.


Pssm-ID: 198154 [Multi-domain]  Cd Length: 90  Bit Score: 80.95  E-value: 1.43e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  769 LTGDELRSIVDIQLTRMRRRLADRRLTLDVSDDARTWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVR 848
Cdd:smart01086   1 LDKEDLVRIVDLPLNALQKRLAEKGITLEFTDEALDWLAEKGYDPKYGARPLRRIIQRELEDPLAELILSGELKDGDTVV 80

                   ....*..
gi 2039925203  849 VDLAESK 855
Cdd:smart01086  81 VDVDDGE 87
 
Name Accession Description Interval E-value
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
1-855 0e+00

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 1344.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203   1 MNAERLTTKSREVITGAVAIASQRGHATVEPWHLLLSLLDTGGSTAGGLLRAVGANPVEVRRAAARAVENLPAARGSSvA 80
Cdd:COG0542     1 MNFEKFTEKAQEALEAAQELARRLGHQEVEPEHLLLALLEQGEGLAAKLLRKLGVDLDALREELEEALGRLPKVSGSS-G 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  81 EPSLAREFANAIGAAEQIARPLGDEYTSTEHLLAGLARVG-GAVAQALKAAGATEENLVAAFPAVRGGdRRVTTADPEQT 159
Cdd:COG0542    80 QPYLSPRLKRVLELAELEARKLGDEYISTEHLLLALLREGeGVAARILKKLGITLEALREALEELRGG-SRVTSQNPESK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 160 YQALEKYGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKL 239
Cdd:COG0542   159 TPALDKYGRDLTELAREGKLDPVIGRDEEIRRVIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRV 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 240 VSLDLGAMVAGAQYRGQFEERLKSVLEEIRGSDGQVITFLDELHTVVGAGKGEGSMDAGNMLKPMLARGELRMVGATTLD 319
Cdd:COG0542   239 LSLDLGALVAGAKYRGEFEERLKAVLDEVKKSEGNIILFIDELHTLVGAGGAEGAMDAANLLKPALARGELRCIGATTLD 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 320 EYRAHIEKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFLPDKAIDLVDES 399
Cdd:COG0542   319 EYRKYIEKDAALERRFQPVLVEEPSVEDTISILRGLKERYEAHHGVRITDEALVAAVRLSDRYITDRFLPDKAIDLIDEA 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 400 ASRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDVASAERLERLRKELADRREQLTALSDRWHLEKDHITRISTAKE 479
Cdd:COG0542   399 AARVRMEIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKE 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 480 ELERlggeaeraerdgeleraaelRYGRIPTLQGELKRAETElvgLQADGAMLKEEVGADDIAAVVASWTGIPAGRLLEG 559
Cdd:COG0542   479 ELEQ--------------------RYGKIPELEKELAELEEE---LAELAPLLREEVTEEDIAEVVSRWTGIPVGKLLEG 535
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 560 ETAKLLRMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRIDM 639
Cdd:COG0542   536 EREKLLNLEEELHERVIGQDEAVEAVADAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTELAKALAEFLFGDEDALIRIDM 615
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 640 SEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNAIL 719
Cdd:COG0542   616 SEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTII 695
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 720 ILTSNLGSAMIADPT---LTEEQRREEVLAVVRTHFKPEFLNRLDDIVVFSSLTGDELRSIVDIQLTRMRRRLADRRLTL 796
Cdd:COG0542   696 IMTSNIGSELILDLAedePDYEEMKEAVMEELKKHFRPEFLNRIDEIIVFHPLSKEELRKIVDLQLKRLRKRLAERGITL 775
                         810       820       830       840       850
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2039925203 797 DVSDDARTWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVRVDLAESK 855
Cdd:COG0542   776 ELTDAAKDFLAEKGYDPEYGARPLKRAIQRELEDPLAEEILAGEIKEGDTITVDVDDGE 834
chaperone_ClpB TIGR03346
ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent ...
6-851 0e+00

ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization]


Pssm-ID: 274529 [Multi-domain]  Cd Length: 850  Bit Score: 1298.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203   6 LTTKSREVITGAVAIASQRGHATVEPWHLLLSLLDTGGSTAGGLLRAVGANPVEVRRAAARAVENLPAARGSsVAEPSLA 85
Cdd:TIGR03346   1 LTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARPLLQKAGVNVGALRQALEKELERLPKVSGP-GGQVYLS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  86 REFANAIGAAEQIARPLGDEYTSTEHLLAGLARVGGAVAQALKAAGATEENLVAAFPAVRGGdRRVTTADPEQTYQALEK 165
Cdd:TIGR03346  80 PDLNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGTLGKLLKEAGATADALEAAINAVRGG-QKVTDANAEDQYEALEK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 166 YGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKLVSLDLG 245
Cdd:TIGR03346 159 YARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPEGLKNKRLLALDMG 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 246 AMVAGAQYRGQFEERLKSVLEEIRGSDGQVITFLDELHTVVGAGKGEGSMDAGNMLKPMLARGELRMVGATTLDEYRAHI 325
Cdd:TIGR03346 239 ALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYI 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 326 EKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFLPDKAIDLVDESASRLRM 405
Cdd:TIGR03346 319 EKDAALERRFQPVFVDEPSVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRM 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 406 EIDSRPVEVDEIERAVRRLEIEEMALAKEPDVASAERLERLRKELADRREQLTALSDRWHLEKDHITRISTAKEELERLG 485
Cdd:TIGR03346 399 EIDSKPEELDELDRRIIQLEIEREALKKEKDEASKKRLEDLEKELADLEEEYAELEEQWKAEKASIQGIQQIKEEIEQVR 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 486 GEAERAERDGELERAAELRYGRIPTLQGELKRAETELVglQADGAMLKEEVGADDIAAVVASWTGIPAGRLLEGETAKLL 565
Cdd:TIGR03346 479 LELEQAEREGDLAKAAELQYGKLPELEKQLQAAEQKLG--EEQNRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLL 556
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 566 RMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRIDMSEYGEK 645
Cdd:TIGR03346 557 HMEEELHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDSEDAMVRIDMSEYMEK 636
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 646 HSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNAILILTSNL 725
Cdd:TIGR03346 637 HSVARLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 716
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 726 GSAMIADPTLTE--EQRREEVLAVVRTHFKPEFLNRLDDIVVFSSLTGDELRSIVDIQLTRMRRRLADRRLTLDVSDDAR 803
Cdd:TIGR03346 717 GSDFIQELAGGDdyEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAAL 796
                         810       820       830       840
                  ....*....|....*....|....*....|....*....|....*...
gi 2039925203 804 TWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVRVDL 851
Cdd:TIGR03346 797 DFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVAPGDTIRVDV 844
PRK10865 PRK10865
ATP-dependent chaperone ClpB;
1-851 0e+00

ATP-dependent chaperone ClpB;


Pssm-ID: 182791 [Multi-domain]  Cd Length: 857  Bit Score: 945.82  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203   1 MNAERLTTKSREVITGAVAIASQRGHATVEPWHLLLSLLDTGGSTAGGLLRAVGANPVEVRRAAARAVENLPAARGSSvA 80
Cdd:PRK10865    1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQVEGTG-G 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  81 EPSLAREFANAIGAAEQIARPLGDEYTSTEHLLAGLARVGGAVAQALKAAGATEENLVAAFPAVRGGDRrVTTADPEQTY 160
Cdd:PRK10865   80 DVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGES-VNDQGAEDQR 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 161 QALEKYGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKLV 240
Cdd:PRK10865  159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 241 SLDLGAMVAGAQYRGQFEERLKSVLEEIRGSDGQVITFLDELHTVVGAGKGEGSMDAGNMLKPMLARGELRMVGATTLDE 320
Cdd:PRK10865  239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 321 YRAHIEKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFLPDKAIDLVDESA 400
Cdd:PRK10865  319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAA 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 401 SRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDVASAERLERLRKELADRREQLTALSDRWHLEKDHITRISTAKEE 480
Cdd:PRK10865  399 SSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAE 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 481 LERLGGEAERAERDGELERAAELRYGRIPTLQGELKRAEtelvglQADGA---MLKEEVGADDIAAVVASWTGIPAGRLL 557
Cdd:PRK10865  479 LEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAAT------QLEGKtmrLLRNKVTDAEIAEVLARWTGIPVSRML 552
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 558 EGETAKLLRMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRI 637
Cdd:PRK10865  553 ESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRI 632
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 638 DMSEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNA 717
Cdd:PRK10865  633 DMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 718 ILILTSNLGSAMIADP--TLTEEQRREEVLAVVRTHFKPEFLNRLDDIVVFSSLTGDELRSIVDIQLTRMRRRLADRRLT 795
Cdd:PRK10865  713 VVIMTSNLGSDLIQERfgELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYE 792
                         810       820       830       840       850
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2039925203 796 LDVSDDARTWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVRVDL 851
Cdd:PRK10865  793 IHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEV 848
clpC CHL00095
Clp protease ATP binding subunit
4-856 0e+00

Clp protease ATP binding subunit


Pssm-ID: 214361 [Multi-domain]  Cd Length: 821  Bit Score: 832.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203   4 ERLTTKSREVITGAVAIASQRGHATVEPWHLLLSLLDTGGSTAGGLLRAVGANPVEVRRAAAR---------AVENLPAA 74
Cdd:CHL00095    3 ERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKiigrgtgfvAVEIPFTP 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  75 RGSSVAEPSLarefanaigaaeQIARPLGDEYTSTEHLLAGLarvggaVAQALKAAGATEENLVAAFPAVRG------GD 148
Cdd:CHL00095   83 RAKRVLEMSL------------EEARDLGHNYIGTEHLLLAL------LEEGEGVAARVLENLGVDLSKIRSlilnliGE 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 149 RRVTTADPEQTYQ---ALEKYGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 225
Cdd:CHL00095  145 IIEAILGAEQSRSktpTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 226 VAGDVPESLRDKKLVSLDLGAMVAGAQYRGQFEERLKSVLEEIRgSDGQVITFLDELHTVVGAGKGEGSMDAGNMLKPML 305
Cdd:CHL00095  225 VNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQ-ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 306 ARGELRMVGATTLDEYRAHIEKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITD 385
Cdd:CHL00095  304 ARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIAD 383
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 386 RFLPDKAIDLVDESASRLRMEIDSRPvevdeieRAVRRLEIEEMALAKEPDVASAERLERLRKELADRREQLTAlsdrwh 465
Cdd:CHL00095  384 RFLPDKAIDLLDEAGSRVRLINSRLP-------PAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRA------ 450
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 466 lekdHITRISTAKEelerlggeaeraerdgeleraaelrygRIPTLQGELKRaetelvglqadgamlkeeVGADDIAAVV 545
Cdd:CHL00095  451 ----QIAAIIQSKK---------------------------TEEEKRLEVPV------------------VTEEDIAEIV 481
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 546 ASWTGIPAGRLLEGETAKLLRMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAE 625
Cdd:CHL00095  482 SAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 626 FLFDDERAMVRIDMSEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLT 705
Cdd:CHL00095  562 YFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLT 641
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 706 DGQGRTVDFRNAILILTSNLGSAMIADPT------LTEEQRREE--------VLAVVRTHFKPEFLNRLDDIVVFSSLTG 771
Cdd:CHL00095  642 DSKGRTIDFKNTLIIMTSNLGSKVIETNSgglgfeLSENQLSEKqykrlsnlVNEELKQFFRPEFLNRLDEIIVFRQLTK 721
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 772 DELRSIVDIQLTRMRRRLADRRLTLDVSDDARTWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVRVDL 851
Cdd:CHL00095  722 NDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDV 801

                  ....*
gi 2039925203 852 AESKD 856
Cdd:CHL00095  802 NDEKE 806
VI_ClpV1 TIGR03345
type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, ...
6-782 0e+00

type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274528 [Multi-domain]  Cd Length: 852  Bit Score: 727.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203   6 LTTKSREVITGAVAIASQRGHATVEPWHLLLSLLDTGGSTAGGLLRAVGANPVEVRRAAARAVENLPaaRGSSvAEPSLA 85
Cdd:TIGR03345   1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLP--RGNT-RTPVFS 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  86 REFANAIGAAEQIAR-PLGDEYTSTEHLL------AGLARVGGAVAQALKAAGAteENLVAAFPAVRGGDR--RVTTADP 156
Cdd:TIGR03345  78 PHLVELLQEAWLLASlELGDGRIRSGHLLlalltdPELRRLLGSISPELAKIDR--EALREALPALVEGSAeaSAAAADA 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 157 EQTYQ--------ALEKYGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAG 228
Cdd:TIGR03345 156 APAGAaagaagtsALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAG 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 229 DVPESLRDKKLVSLDLGAMVAGAQYRGQFEERLKSVLEEIRGSDGQVITFLDELHTVVGAGKGEGSMDAGNMLKPMLARG 308
Cdd:TIGR03345 236 DVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 309 ELRMVGATTLDEYRAHIEKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFL 388
Cdd:TIGR03345 316 ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL 395
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 389 PDKAIDLVDESASRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDV--ASAERLERLRKELADRREQLTALSDRWHL 466
Cdd:TIGR03345 396 PDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALgaDHDERLAELRAELAALEAELAALEARWQQ 475
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 467 EKDHITRISTAKEELErlggEAERAERDGELERAAELRygriptlqgelkRAETELVGLQADGAMLKEEVGADDIAAVVA 546
Cdd:TIGR03345 476 EKELVEAILALRAELE----ADADAPADDDDALRAQLA------------ELEAALASAQGEEPLVFPEVDAQAVAEVVA 539
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 547 SWTGIPAGRLLEGETAKLLRMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEF 626
Cdd:TIGR03345 540 DWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL 619
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 627 LFDDERAMVRIDMSEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTD 706
Cdd:TIGR03345 620 LYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMED 699
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 707 GQGRTVDFRNAILILTSNLGSAMIADPTLTEEQRR--EEVLAVVR----THFKPEFLNRLdDIVVFSSLTGDELRSIVDI 780
Cdd:TIGR03345 700 GEGREIDFKNTVILLTSNAGSDLIMALCADPETAPdpEALLEALRpellKVFKPAFLGRM-TVIPYLPLDDDVLAAIVRL 778

                  ..
gi 2039925203 781 QL 782
Cdd:TIGR03345 779 KL 780
ClpA TIGR02639
ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, ...
11-851 0e+00

ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, peptides, and glycopeptides]


Pssm-ID: 274241 [Multi-domain]  Cd Length: 730  Bit Score: 695.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  11 REVITGAVAIASQRGHATVEPWHLLLSLLDTggSTAGGLLRAVGANPVEVRRAAARAVE-NLPAARGSSVAEPSLAREFA 89
Cdd:TIGR02639   6 ERILSDALEEAKERRHEFVTLEHLLLALLDD--NEAIEILEECGGDVELLRKRLEDYLEeNLPVIPEDIDEEPEQTVGVQ 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  90 NAIGAAEQIARPLGDEYTSTEHLLAGLARVGGAVAQ-ALKAAGATEENLVA----AFPAVRGGDRRVTTADPEQTYQ--A 162
Cdd:TIGR02639  84 RVIQRALLHVKSAGKKEIDIGDLLVALFDEEDSHASyFLKSQGITRLDILNyishGISKDDGKDQLGEEAGKEEEKGqdA 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 163 LEKYGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKLVSL 242
Cdd:TIGR02639 164 LEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLALRIAEGKVPERLKNAKIYSL 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 243 DLGAMVAGAQYRGQFEERLKSVLEEIRGSDGQvITFLDELHTVVGAGK-GEGSMDAGNMLKPMLARGELRMVGATTLDEY 321
Cdd:TIGR02639 244 DMGTLLAGTKYRGDFEERLKAVVSEIEKEPNA-ILFIDEIHTIVGAGAtSGGSMDASNLLKPALSSGKIRCIGSTTYEEY 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 322 RAHIEKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFLPDKAIDLVDESAS 401
Cdd:TIGR02639 323 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 402 RLRMEIDSRPvevdeieravrrleieemalakepdvasaerlerlrkeladrreqltalsdrwhlekdhitristakeel 481
Cdd:TIGR02639 403 AFRLRPKAKK---------------------------------------------------------------------- 412
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 482 erlggeaeraerdgeleraaelrygriptlqgelkraetelvglqadgamlKEEVGADDIAAVVASWTGIPAGRLLEGET 561
Cdd:TIGR02639 413 ---------------------------------------------------KANVNVKDIENVVAKMAKIPVKTVSSDDR 441
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 562 AKLLRMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLfddERAMVRIDMSE 641
Cdd:TIGR02639 442 EQLKNLEKNLKAKIFGQDEAIDQLVSAIKRSRAGLGDPNKPVGSFLFVGPTGVGKTELAKQLAEEL---GVHLLRFDMSE 518
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 642 YGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNAILIL 721
Cdd:TIGR02639 519 YMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIM 598
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 722 TSNLGSAMIADPTL--TEEQRREEVLAVVRTHFKPEFLNRLDDIVVFSSLTGDELRSIVDIQLTRMRRRLADRRLTLDVS 799
Cdd:TIGR02639 599 TSNAGASEMSKPPIgfGGENRESKSLKAIKKLFSPEFRNRLDAIIHFNDLSEEMAEKIVKKFLDELQDQLNEKNIELELT 678
                         810       820       830       840       850
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2039925203 800 DDARTWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVRVDL 851
Cdd:TIGR02639 679 DDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGSVKISL 730
clpA PRK11034
ATP-dependent Clp protease ATP-binding subunit; Provisional
14-861 1.69e-170

ATP-dependent Clp protease ATP-binding subunit; Provisional


Pssm-ID: 236828 [Multi-domain]  Cd Length: 758  Bit Score: 512.85  E-value: 1.69e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  14 ITGAVAIASQRGHA--TVEpwHLLLSLLDTggSTAGGLLRAVGANPVEVRRAAARAVEN----LPAARGSSVAEPSLA-- 85
Cdd:PRK11034   10 LNMAFARAREHRHEfmTVE--HLLLALLSN--PSAREALEACSVDLVALRQELEAFIEQttpvLPASEEERDTQPTLSfq 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  86 REFANAIGAAEQIARplgDEYTSTEHLLAGLARVGGAVAQALKAAGATEENLVA----AFPAVRGGDRRVTTADPEQTYQ 161
Cdd:PRK11034   86 RVLQRAVFHVQSSGR---SEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNfishGTRKDEPSQSSDPGSQPNSEEQ 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 162 A-----LEKYGVDLTASARDGKIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRD 236
Cdd:PRK11034  163 AggeerMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 237 KKLVSLDLGAMVAGAQYRGQFEERLKSVLEEIRgSDGQVITFLDELHTVVGAGKGE-GSMDAGNMLKPMLARGELRMVGA 315
Cdd:PRK11034  243 CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE-QDTNSILFIDEIHTIIGAGAASgGQVDAANLIKPLLSSGKIRVIGS 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 316 TTLDEYRAHIEKDPALERRFQPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFLPDKAIDL 395
Cdd:PRK11034  322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 396 VDESASRLRmeidsrpvevdeieravrrleieemalakepdvasaerlerlrkeladrreqLTALSDRwhlekdhitris 475
Cdd:PRK11034  402 IDEAGARAR----------------------------------------------------LMPVSKR------------ 417
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 476 takeelerlggeaeraerdgeleraaelrygriptlqgelkraetelvglqadgamlKEEVGADDIAAVVASWTGIPAGR 555
Cdd:PRK11034  418 ---------------------------------------------------------KKTVNVADIESVVARIARIPEKS 440
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 556 LLEGETAKLLRMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLfddERAMV 635
Cdd:PRK11034  441 VSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELL 517
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 636 RIDMSEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFR 715
Cdd:PRK11034  518 RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFR 597
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 716 NAILILTSNLGSAMIADPT--LTEEQRREEVLAVVRTHFKPEFLNRLDDIVVFSSLTGDELRSIVDIQLTRMRRRLADRR 793
Cdd:PRK11034  598 NVVLVMTTNAGVRETERKSigLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677
                         810       820       830       840       850       860
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2039925203 794 LTLDVSDDARTWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVRVDLAESKDGLTVE 861
Cdd:PRK11034  678 VSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYG 745
RecA-like_ClpB_Hsp104-like cd19499
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ...
563-766 2.11e-104

Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410907 [Multi-domain]  Cd Length: 178  Bit Score: 319.89  E-value: 2.11e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 563 KLLRMEESLGERVIGQREAVTAVSDAVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRIDMSEY 642
Cdd:cd19499     1 KLLNLEERLHERVVGQDEAVKAVSDAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 643 GEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNAILILT 722
Cdd:cd19499    81 MEKHSVSRLIGAPPGYVGYTEGGQLTEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRLTDSHGRTVDFKNTIIIMT 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2039925203 723 SNlgsamiadptlteeqrreevlavvrtHFKPEFLNRLDDIVVF 766
Cdd:cd19499   161 SN--------------------------HFRPEFLNRIDEIVVF 178
AAA_2 pfam07724
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ...
601-763 9.80e-91

AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400187 [Multi-domain]  Cd Length: 168  Bit Score: 283.70  E-value: 9.80e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 601 RPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRIDMSEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVL 680
Cdd:pfam07724   1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 681 LDEVEKAHPDVFDVLLQVLDDGRLTDGQGRTVDFRNAILILTSNLGSAMIAD-----PTLTEEQRREEVLAVVRTHFKPE 755
Cdd:pfam07724  81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGNFGSEKISDasrlgDSPDYELLKEEVMDLLKKGFIPE 160

                  ....*...
gi 2039925203 756 FLNRLDDI 763
Cdd:pfam07724 161 FLGRLPII 168
AAA_lid_9 pfam17871
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ...
344-447 4.43e-37

AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.


Pssm-ID: 465544 [Multi-domain]  Cd Length: 104  Bit Score: 134.54  E-value: 4.43e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 344 TVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFLPDKAIDLVDESASRLRMEIDSRPVEVDEIERAVRR 423
Cdd:pfam17871   1 SVEEAIEILRGLKPKYEKHHGVRISDEALEAAVKLSKRYITDRFLPDKAIDLLDEACARVRLSQESKPEELEDLERELAK 80
                          90       100
                  ....*....|....*....|....
gi 2039925203 424 LEIEEMALAKEPDVASAERLERLR 447
Cdd:pfam17871  81 LEIEKEALEREQDFEKAERLAKLE 104
ClpB_D2-small pfam10431
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ...
769-849 2.36e-21

C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerization, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.


Pssm-ID: 463090 [Multi-domain]  Cd Length: 81  Bit Score: 88.62  E-value: 2.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 769 LTGDELRSIVDIQLTRMRRRLADRRLTLDVSDDARTWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVR 848
Cdd:pfam10431   1 LSKEELRKIVDLQLKELQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELKEGDTVR 80

                  .
gi 2039925203 849 V 849
Cdd:pfam10431  81 V 81
ClpB_D2-small smart01086
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ...
769-855 1.43e-18

C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly. The domain is associated with two Clp_N at the N-terminus as well as AAA and AAA_2.


Pssm-ID: 198154 [Multi-domain]  Cd Length: 90  Bit Score: 80.95  E-value: 1.43e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  769 LTGDELRSIVDIQLTRMRRRLADRRLTLDVSDDARTWLADHGYDPIYGARPLRRLVQSAIGDRLAKALLAGAVRDGDTVR 848
Cdd:smart01086   1 LDKEDLVRIVDLPLNALQKRLAEKGITLEFTDEALDWLAEKGYDPKYGARPLRRIIQRELEDPLAELILSGELKDGDTVV 80

                   ....*..
gi 2039925203  849 VDLAESK 855
Cdd:smart01086  81 VDVDDGE 87
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
576-735 1.26e-17

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 80.65  E-value: 1.26e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 576 IGQREAVTAVSDAVRRartgiadpdRPTGSFLFLGPTGVGKTELGKALAEFLFDDERAMVRIDMSEYGEKHSVARLvgap 655
Cdd:cd00009     1 VGQEEAIEALREALEL---------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL---- 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 656 pgyVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPDVFDVLLQVLDDGRLTdgqgrTVDFRNAILILTSNLGSAMIADPTL 735
Cdd:cd00009    68 ---FGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDL-----RIDRENVRVIGATNRPLLGDLDRAL 139
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
183-343 3.04e-16

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 76.80  E-value: 3.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 183 IGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVagdvpesLRDKKLVSLDLGAMVAGAQYRGQFEERLK 262
Cdd:cd00009     1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF-------RPGAPFLYLNASDLLEGLVVAELFGHFLV 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 263 SVLEEIRGSDGQVITFLDELHTvVGAGKGEGSMDAGNMLKPMLA-RGELRMVGATTLDEYrahIEKDPALERRFQPVLVG 341
Cdd:cd00009    74 RLLFELAEKAKPGVLFIDEIDS-LSRGAQNALLRVLETLNDLRIdRENVRVIGATNRPLL---GDLDRALYDRLDIRIVI 149

                  ..
gi 2039925203 342 EP 343
Cdd:cd00009   150 PL 151
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
607-727 3.58e-12

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 64.70  E-value: 3.58e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  607 LFLGPTGVGKTELGKALAEFLFDDERAMVRIDMSEYGEKHSVARLVGAPPGYVGYEEGGQ----LTEAVRRRPYSVVLLD 682
Cdd:smart00382   6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELrlrlALALARKLKPDVLILD 85
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 2039925203  683 EVEKAHPDVFDVLLQVLDDGRLTDGQGRtvdFRNAILILTSNLGS 727
Cdd:smart00382  86 EITSLLDAEQEALLLLLEELRLLLLLKS---EKNLTVILTTNDEK 127
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
605-724 1.73e-11

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 62.31  E-value: 1.73e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 605 SFLFLGPTGVGKTELGKALAEFLFDDERAMVRI--DMSEygekhsvARLVGA--PPGYVGYEEGGQLTEAVRRRpySVVL 680
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLtrDTTE-------EDLFGRrnIDPGGASWVDGPLVRAAREG--EIAV 71
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2039925203 681 LDEVEKAHPDVFDVLLQVLDDGRLTDGQGRT---VDFRNAILILTSN 724
Cdd:pfam07728  72 LDEINRANPDVLNSLLSLLDERRLLLPDGGElvkAAPDGFRLIATMN 118
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
588-747 4.02e-10

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 59.22  E-value: 4.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 588 AVRRARTGIADPDRPTGSFLFLGPTGVGKTELGKALAEFLfddERAMVRIDMSEYGEKHSvarlvgappgYVGYEEGGQL 667
Cdd:cd19481    11 APRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGEL---GLPLIVVKLSSLLSKYV----------GESEKNLRKI 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 668 TEAVRRRPYSVVLLDEVEKAHPD------------VFDVLLQVLDDGRLTDgqgrtvdfrNAILILTSNLGSAMiaDPTL 735
Cdd:cd19481    78 FERARRLAPCILFIDEIDAIGRKrdssgesgelrrVLNQLLTELDGVNSRS---------KVLVIAATNRPDLL--DPAL 146
                         170
                  ....*....|..
gi 2039925203 736 TEEQRREEVLAV 747
Cdd:cd19481   147 LRPGRFDEVIEF 158
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
206-339 1.23e-08

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 54.14  E-value: 1.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 206 LIGEPGVGKTAIVEGLAQRIvagdvpeslrDKKLVSLDLGAMVagAQYRGQFEERLKSVLEEIRGSDGQVItFLDELHTV 285
Cdd:pfam00004   3 LYGPPGTGKTTLAKAVAKEL----------GAPFIEISGSELV--SKYVGESEKRLRELFEAAKKLAPCVI-FIDEIDAL 69
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2039925203 286 VGA---GKGEGSMDAGNMLKPML-----ARGELRMVGATTldeyraHIEK-DPALERRFQPVL 339
Cdd:pfam00004  70 AGSrgsGGDSESRRVVNQLLTELdgftsSNSKVIVIAATN------RPDKlDPALLGRFDRII 126
Clp_N pfam02861
Clp amino terminal domain, pathogenicity island component; This short domain is found in one ...
95-146 1.13e-07

Clp amino terminal domain, pathogenicity island component; This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site. In many bacterial species, including E.coli, this region represents the N-terminus of one of the key components of the pathogenicity island complex that injects toxin from one bacterium into another.


Pssm-ID: 460724 [Multi-domain]  Cd Length: 53  Bit Score: 49.06  E-value: 1.13e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2039925203  95 AEQIARPLGDEYTSTEHLLAGLARVG-GAVAQALKAAGATEENLVAAFPAVRG 146
Cdd:pfam02861   1 AQELARALGHQYIGTEHLLLALLEEDdGLAARLLKKAGVDLDALREAIEKLLG 53
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
410-782 1.02e-06

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 51.84  E-value: 1.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 410 RPVEVDEIERAVRRLEIEEMALAKEPDVASAERLERLRKELADRREQLTALSDRWHLEKDHITRISTAKEELERLGGEAE 489
Cdd:COG0464    10 ALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLALLAALLSAL 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 490 RAERDGELERAAELRYGRIPTLQGELKRAETELVGLQADGAMLKEEVGADDIAAVVASwtgipAGRLLEGETAKLLRMEE 569
Cdd:COG0464    90 ELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEE-----LLELREAILDDLGGLEE 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 570 sLGERVigqREAVTAVSDAVR-RARTGIadpdRPTGSFLFLGPTGVGKTELGKALAEFLfddERAMVRIDMSEygekhsv 648
Cdd:COG0464   165 -VKEEL---RELVALPLKRPElREEYGL----PPPRGLLLYGPPGTGKTLLARALAGEL---GLPLIEVDLSD------- 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 649 arLVGappGYVGYEEGG--QLTEAVRRRPYSVVLLDEVEKAHPD-----------VFDVLLQVLDDGRltdgqgrtvdfR 715
Cdd:COG0464   227 --LVS---KYVGETEKNlrEVFDKARGLAPCVLFIDEADALAGKrgevgdgvgrrVVNTLLTEMEELR-----------S 290
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2039925203 716 NAILILTSNLGSAMiaDptlteeqrreevlavvrthfkPEFLNRLDDIVVFSSLTGDELRSIVDIQL 782
Cdd:COG0464   291 DVVVIAATNRPDLL--D---------------------PALLRRFDEIIFFPLPDAEERLEIFRIHL 334
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
27-367 1.53e-06

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 51.45  E-value: 1.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  27 ATVEPWHLLLSLLDTGGSTAGGLLRAVGANPVEVRRAAARAVENLPAARGSSVAEPSLAREFANAIGAAEQIARPLGDEY 106
Cdd:COG0464     5 LALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLALLAA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 107 TSTEHLLAGLARVGGAVAQALKAAGATEENLVAAFPAVRGGDRRVTTADPEQTYQALEKyGVDLTASARDGKIDPVIGRD 186
Cdd:COG0464    85 LLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGG-LEEELLELREAILDDLGGLE 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 187 S---EIRRVIQVLSRRTKNNP----------VLIGEPGVGKTAIVEGLAQRIvagdvpeslrDKKLVSLDLGAMVagAQY 253
Cdd:COG0464   164 EvkeELRELVALPLKRPELREeyglppprglLLYGPPGTGKTLLARALAGEL----------GLPLIEVDLSDLV--SKY 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 254 RGQFEERLKSVLEEIRGSDGQVItFLDELHTVVGAGKGEGSMDAGNMLKPMLA-----RGELRMVGATTldeyraHIEK- 327
Cdd:COG0464   232 VGETEKNLREVFDKARGLAPCVL-FIDEADALAGKRGEVGDGVGRRVVNTLLTemeelRSDVVVIAATN------RPDLl 304
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2039925203 328 DPALERRFQPVL-VGEPTVEDTIGILRGLKERYEVHHGVRI 367
Cdd:COG0464   305 DPALLRRFDEIIfFPLPDAEERLEIFRIHLRKRPLDEDVDL 345
Clp_N pfam02861
Clp amino terminal domain, pathogenicity island component; This short domain is found in one ...
17-63 1.72e-06

Clp amino terminal domain, pathogenicity island component; This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site. In many bacterial species, including E.coli, this region represents the N-terminus of one of the key components of the pathogenicity island complex that injects toxin from one bacterium into another.


Pssm-ID: 460724 [Multi-domain]  Cd Length: 53  Bit Score: 45.59  E-value: 1.72e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2039925203  17 AVAIASQRGHATVEPWHLLLSLLDTGGSTAGGLLRAVGANPVEVRRA 63
Cdd:pfam02861   1 AQELARALGHQYIGTEHLLLALLEEDDGLAARLLKKAGVDLDALREA 47
RecA-like_Lon cd19500
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an ...
607-700 1.49e-05

lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an evolutionarily conserved ATP-dependent serine protease, present in bacteria and eukaryotic mitochondria and peroxisomes, which mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Lon protease is both an ATP-dependent peptidase and a protein-activated ATPase. This RecA-like Lon domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410908 [Multi-domain]  Cd Length: 182  Bit Score: 46.40  E-value: 1.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 607 LFLGPTGVGKTELGKALAEFLfddERAMVRIDMseyGEKHSVARLVGAPPGYVGyEEGGQLTEAVRR----RPysVVLLD 682
Cdd:cd19500    41 CLVGPPGVGKTSLGKSIARAL---GRKFVRISL---GGVRDEAEIRGHRRTYVG-AMPGRIIQALKKagtnNP--VFLLD 111
                          90       100
                  ....*....|....*....|..
gi 2039925203 683 EVEK----AHPDVFDVLLQVLD 700
Cdd:cd19500   112 EIDKigssFRGDPASALLEVLD 133
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
607-724 8.37e-05

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 42.97  E-value: 8.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 607 LFLGPTGVGKTELGKALAEFLFddeRAMVRIDMSEYGEKHsvarlVGAPPGYVgyeegGQLTEAVRRRPYSVVLLDEVEK 686
Cdd:pfam00004   2 LLYGPPGTGKTTLAKAVAKELG---APFIEISGSELVSKY-----VGESEKRL-----RELFEAAKKLAPCVIFIDEIDA 68
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2039925203 687 AHP-----------DVFDVLLQVLDdgrltdgqGRTVDFRNAILILTSN 724
Cdd:pfam00004  69 LAGsrgsggdsesrRVVNQLLTELD--------GFTSSNSKVIVIAATN 109
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
12-598 1.10e-04

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 46.02  E-value: 1.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203   12 EVITGAVAIASQRGHATVEPWHLLLSLLDTGGSTAGGLLRAVG---ANPVEVRRAAAravenLPAARGSSVAEPSLA--R 86
Cdd:COG3321    796 EVGPGPVLTGLVRQCLAAAGDAVVLPSLRRGEDELAQLLTALAqlwVAGVPVDWSAL-----YPGRGRRRVPLPTYPfqR 870
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203   87 EFANAIGAAEQIARPLGDEYTSTEHLLAGLARVGGAVAQALKAAGATEENLVAAFPAVRGGDRRVTTADPEQTYQALEKY 166
Cdd:COG3321    871 EDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALAAAAAALLALAAAAA 950
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  167 GVDLTASARDGkIDPVIGRDSEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKLVSLDLGA 246
Cdd:COG3321    951 AAAAALAAAEA-GALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAAAAAAALLALAALLA 1029
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  247 MVAGAQYRGQFEERLKSVLEEIRGSDGQVITFLDELHTVVGAGKGEGSMDAGNMLKPMLARGELRMVGATTLDEYRAHIE 326
Cdd:COG3321   1030 AAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALALALAALAAALLLL 1109
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  327 KDPALERRF-QPVLVGEPTVEDTIGILRGLKERYEVHHGVRITDAALVAAASLSDRYITDRFLPDKAIDLVDESASRLRM 405
Cdd:COG3321   1110 ALLAALALAaAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLALALALAAALAAAL 1189
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  406 EIDSRPVEVDEIERAVRRLEIEEMALAKEPDVASAERLERLRKELADRREQLTALSDRWHLEKDHITRISTAKEELERLG 485
Cdd:COG3321   1190 AGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAALLAALAALALLAAAA 1269
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  486 GEAERAERDGELERAAELRYGRIPTLQGELKRAETELVGLQADGAMLKEEVGADDIAAVVASWTGIPAGRLLEGETAKLL 565
Cdd:COG3321   1270 GLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLAAALAALAAAVAAALALAAAAAA 1349
                          570       580       590
                   ....*....|....*....|....*....|...
gi 2039925203  566 RMEESLGERVIGQREAVTAVSDAVRRARTGIAD 598
Cdd:COG3321   1350 AAAAAAAAAAAAALAAAAGAAAAAAALALAALA 1382
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
409-540 1.22e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.82  E-value: 1.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  409 SRPVEVDEIERAVRRLEIEEMALAKEpdvasaerLERLRKELADRREQLTALSDRWHlekDHITRISTAKEELERLGGEA 488
Cdd:TIGR02168  674 ERRREIEELEEKIEELEEKIAELEKA--------LAELRKELEELEEELEQLRKELE---ELSRQISALRKDLARLEAEV 742
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  489 ERAER-----DGELERAAELRYG---RIPTLQGELKRAETELVGLQADGAMLKEEVGADD 540
Cdd:TIGR02168  743 EQLEEriaqlSKELTELEAEIEEleeRLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
413-536 1.62e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 45.14  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 413 EVDEIERAVRRLEIEEMALAKEPDVASA-ERLERLRKELADRREQLTALSDRWHLEKDHITRISTAKEELERLGGEAERA 491
Cdd:COG4717   103 ELEELEAELEELREELEKLEKLLQLLPLyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEEL 182
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2039925203 492 ERDGELERAAELRY--GRIPTLQGELKRAETELVGLQADGAMLKEEV 536
Cdd:COG4717   183 LEQLSLATEEELQDlaEELEELQQRLAELEEELEEAQEELEELEEEL 229
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
200-340 1.64e-04

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 42.75  E-value: 1.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  200 TKNNPVLIGEPGVGKTAIVEGLAQ-------RIVAGDVPESLRDKKLVSLDLGAMVAGAQYRGqfEERLKSVLEEIRGSD 272
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARelgppggGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG--ELRLRLALALARKLK 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  273 GQVItFLDELHTVVGAG--KGEGSMDAGNMLKPMLARGELRMVGATTLDEyrahIEKDPALERRFQPVLV 340
Cdd:smart00382  79 PDVL-ILDEITSLLDAEqeALLLLLEELRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDRRIV 143
DNA_pol3_delta2 pfam13177
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ...
600-727 2.31e-04

DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.


Pssm-ID: 433013 [Multi-domain]  Cd Length: 161  Bit Score: 42.58  E-value: 2.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 600 DRPTGSFLFLGPTGVGKTELGKALAEFLFDDEramvRIDMSEYGEKHSVARLV-GAPPGYVGYEEGGQ---------LTE 669
Cdd:pfam13177  16 GRLSHAYLFSGPEGVGKLELALAFAKALFCEE----PGDDLPCGQCRSCRRIEsGNHPDLVIIEPEGQsikidqireLQK 91
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2039925203 670 AVRRRPY----SVVLLDEVEKAHPDVFDVLLQVLDdgrltDGQGRTVdfrnaILILTSNLGS 727
Cdd:pfam13177  92 EFSKSPYegkkKVYIIEDAEKMTASAANSLLKFLE-----EPPGNTV-----IILLTENPSR 143
AAA_22 pfam13401
AAA domain;
601-703 2.88e-04

AAA domain;


Pssm-ID: 379165 [Multi-domain]  Cd Length: 129  Bit Score: 41.56  E-value: 2.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 601 RPTGSFLFL-GPTGVGKTELGKALAEFLFDDERAMVRIDMSEYGEK----HSVARLVGAPPGYVGYEEG--GQLTEAVRR 673
Cdd:pfam13401   2 RFGAGILVLtGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSGTSPkdllRALLRALGLPLSGRLSKEEllAALQQLLLA 81
                          90       100       110
                  ....*....|....*....|....*....|.
gi 2039925203 674 RP-YSVVLLDEVEKAHPDVFDVLLQVLDDGR 703
Cdd:pfam13401  82 LAvAVVLIIDEAQHLSLEALEELRDLLNLSS 112
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
413-525 6.27e-04

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 43.67  E-value: 6.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  413 EVDEIERAVRRLEIEEMALA------KEPDVASAERLERLRKELADRREQLTALSDRWHLEKDHIT-RISTAK------- 478
Cdd:pfam12128  242 EFTKLQQEFNTLESAELRLShlhfgyKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNgELSAADaavakdr 321
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2039925203  479 EELERLGGEAERAERDGELERAAELRygRIPTLQGELKRAETELVGL 525
Cdd:pfam12128  322 SELEALEDQHGAFLDADIETAAADQE--QLPSWQSELENLEERLKAL 366
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
404-594 8.19e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.37  E-value: 8.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  404 RMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDVASA--ERLERLRKELADRREQLTALSDRWHLEKDH----------- 470
Cdd:COG4913    595 RRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEErlEALEAELDALQERREALQRLAEYSWDEIDVasaereiaele 674
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  471 --ITRISTAKEELERLGGEAERAERDG-ELERAAELRYGRIPTLQGELKRAETELVGLQAdgamlkEEVGADDIAAVVAS 547
Cdd:COG4913    675 aeLERLDASSDDLAALEEQLEELEAELeELEEELDELKGEIGRLEKELEQAEEELDELQD------RLEAAEDLARLELR 748
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 2039925203  548 WTGIPAgRLLEGETAKLLRMEESLGERVIGQREAVTAVSDAVRRART 594
Cdd:COG4913    749 ALLEER-FAAALGDAVERELRENLEERIDALRARLNRAEEELERAMR 794
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
205-335 8.85e-04

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 40.35  E-value: 8.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 205 VLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKKLVSLDLgamVAGAQYRGQFEERLKSVL-EEIRGSDgqvITFLDELH 283
Cdd:pfam07728   3 LLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDL---FGRRNIDPGGASWVDGPLvRAAREGE---IAVLDEIN 76
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2039925203 284 T----VVGAGKG---EGSMDAGNMLKPMLARGELRMVGATTLDEYRAHIEKDPALERRF 335
Cdd:pfam07728  77 RanpdVLNSLLSlldERRLLLPDGGELVKAAPDGFRLIATMNPLDRGLNELSPALRSRF 135
RecA-like_HslU cd19498
ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease ...
569-686 1.21e-03

ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease HslVU. In HslVU, HslU ATPase serves to unfold and translocate protein substrate, and the HslV protease degrades the unfolded proteins. This RecA-like_HslU subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410906 [Multi-domain]  Cd Length: 183  Bit Score: 40.83  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 569 ESLGERVIGQREAVTAVSDAVR------RARTGIADPDRPTgSFLFLGPTGVGKTELGKALAEFLfddERAMVRIDMSEY 642
Cdd:cd19498     7 SELDKYIIGQDEAKRAVAIALRnrwrrmQLPEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLA---GAPFIKVEATKF 82
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2039925203 643 GEKhsvarlvgappGYVGYEeggqLTEAVRRRPYSVVLLDEVEK 686
Cdd:cd19498    83 TEV-----------GYVGRD----VESIIRDLVEGIVFIDEIDK 111
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
390-528 1.34e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.59  E-value: 1.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  390 DKAIDLVDESASRLRM--EIDSRPVEVDEIERAVRRLEIEEMALAKEPDVASA---------ERLERLRKELADRREQLT 458
Cdd:COG4913    637 EAELDALQERREALQRlaEYSWDEIDVASAEREIAELEAELERLDASSDDLAAleeqleeleAELEELEEELDELKGEIG 716
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2039925203  459 ALSDRWHLEKDHITRISTAKEELERLGGEAERAERDGELERA------AELR---YGRIPTLQGELKRAETELVGLQAD 528
Cdd:COG4913    717 RLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAAlgdaveRELRenlEERIDALRARLNRAEEELERAMRA 795
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
396-536 2.00e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 40.68  E-value: 2.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 396 VDESASRLRMEIDSRPVEVDEIERAVRRLEiEEMALAKepdvasaERLERLRKELADRREQLTALSDRwhLEKD--HITR 473
Cdd:COG1579    15 LDSELDRLEHRLKELPAELAELEDELAALE-ARLEAAK-------TELEDLEKEIKRLELEIEEVEAR--IKKYeeQLGN 84
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2039925203 474 ISTAKeELERLGGEAERAERD-GELERAAELRYGRIPTLQGELKRAETELVGLQADGAMLKEEV 536
Cdd:COG1579    85 VRNNK-EYEALQKEIESLKRRiSDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL 147
COG1223 COG1223
Predicted ATPase, AAA+ superfamily [General function prediction only];
187-353 2.65e-03

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440836 [Multi-domain]  Cd Length: 246  Bit Score: 40.25  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 187 SEIRRVIQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIvagDVPeslrdkkLVSLDLGAMVAgaQYRGQF 257
Cdd:COG1223    12 KKLKLIIKELRRRenlrkfglwPPRKILFYGPPGTGKTMLAEALAGEL---KLP-------LLTVRLDSLIG--SYLGET 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203 258 EERLKSVLEEIRGSDGqvITFLDELHTVvgaGKGEGSMDAgnmlkpmlaRGEL-RMVGA--TTLDEYRAHI--------- 325
Cdd:COG1223    80 ARNLRKLFDFARRAPC--VIFFDEFDAI---AKDRGDQND---------VGEVkRVVNAllQELDGLPSGSvviaatnhp 145
                         170       180       190
                  ....*....|....*....|....*....|
gi 2039925203 326 -EKDPALERRFQPVL-VGEPTVEDTIGILR 353
Cdd:COG1223   146 eLLDSALWRRFDEVIeFPLPDKEERKEILE 175
RecA-like_ClpX cd19497
ATP-dependent Clp protease ATP-binding subunit ClpX; ClpX is a component of the ATP-dependent ...
569-627 3.15e-03

ATP-dependent Clp protease ATP-binding subunit ClpX; ClpX is a component of the ATP-dependent protease ClpXP. In ClpXP, ClpX ATPase serves to specifically recognize, unfold, and translocate protein substrates into the chamber of ClpP protease for degradation. This RecA-like_ClpX domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410905 [Multi-domain]  Cd Length: 251  Bit Score: 40.28  E-value: 3.15e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2039925203 569 ESLGERVIGQREAVTAVSDAV----RRARTGIADPDRPT----GSFLFLGPTGVGKTELGKALAEFL 627
Cdd:cd19497     8 EHLDKYVIGQERAKKVLSVAVynhyKRIRNNLKQKDDDVelekSNILLIGPTGSGKTLLAQTLAKIL 74
DnaX COG2812
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
573-628 3.63e-03

DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];


Pssm-ID: 442061 [Multi-domain]  Cd Length: 340  Bit Score: 40.56  E-value: 3.63e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2039925203 573 ERVIGQREAVTAVSDAVRRartgiadpDRPTGSFLFLGPTGVGKTELGKALAEFLF 628
Cdd:COG2812    10 DDVVGQEHVVRTLKNALAS--------GRLAHAYLFTGPRGVGKTTLARILAKALN 57
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
181-230 4.49e-03

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 39.02  E-value: 4.49e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2039925203 181 PVIGRDSEIRRVIQVLSRRTKNNP---VLIGEPGVGKTAIVEGLAQRIVAGDV 230
Cdd:pfam13191   1 RLVGREEELEQLLDALDRVRSGRPpsvLLTGEAGTGKTTLLRELLRALERDGG 53
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
391-527 8.68e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 8.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2039925203  391 KAIDLVDESASRLRMEIDSRPVEVDEIERAVRRLEIEEMALAKEPDVASAERLERLRKELADRREQLTALSDRWHLEKDH 470
Cdd:COG4913    288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEAL 367
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2039925203  471 ITRI----STAKEELERLGGEAE--RAERDGELERAAELRY---GRIPTLQGELKRAETELVGLQA 527
Cdd:COG4913    368 LAALglplPASAEEFAALRAEAAalLEALEEELEALEEALAeaeAALRDLRRELRELEAEIASLER 433
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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