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Conserved domains on  [gi|2044503231|ref|WP_213292283|]
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helix-turn-helix domain-containing protein, partial [Bifidobacterium animalis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tra8 super family cl28582
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
17-65 5.07e-12

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG2826:

Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 59.51  E-value: 5.07e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2044503231  17 KKNANLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELNRGVVRQ 65
Cdd:COG2826     2 RSYKHLTLEEREEIEALLKAGLSVREIARRLGRSPSTISRELKRNSGRR 50
 
Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
17-65 5.07e-12

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 59.51  E-value: 5.07e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2044503231  17 KKNANLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELNRGVVRQ 65
Cdd:COG2826     2 RSYKHLTLEEREEIEALLKAGLSVREIARRLGRSPSTISRELKRNSGRR 50
HTH_38 pfam13936
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is ...
 22-61 3.43e-09

Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.


Pssm-ID: 433591 [Multi-domain]  Cd Length: 44  Bit Score: 47.51  E-value: 3.43e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 2044503231 22 LTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELNRG 61
Cdd:pfam13936  5 LSLEEREEIARLLAEGLSLREIARRLGRSPSTISRELRRN 44
 
Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
17-65 5.07e-12

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 59.51  E-value: 5.07e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2044503231  17 KKNANLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELNRGVVRQ 65
Cdd:COG2826     2 RSYKHLTLEEREEIEALLKAGLSVREIARRLGRSPSTISRELKRNSGRR 50
HTH_38 pfam13936
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is ...
 22-61 3.43e-09

Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.


Pssm-ID: 433591 [Multi-domain]  Cd Length: 44  Bit Score: 47.51  E-value: 3.43e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 2044503231 22 LTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELNRG 61
Cdd:pfam13936  5 LSLEEREEIARLLAEGLSLREIARRLGRSPSTISRELRRN 44
COG4584 COG4584
Transposase [Mobilome: prophages, transposons];
22-54 1.16e-05

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 443641 [Multi-domain]  Cd Length: 484  Bit Score: 41.36  E-value: 1.16e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2044503231  22 LTKEERVMIATLKSQGLSNRAIGRQLGVNHQTI 54
Cdd:COG4584     2 LTMEQIREIRRLLREGLSIREIARELGISRNTV 34
HTH_23 pfam13384
Homeodomain-like domain;
21-60 8.22e-03

Homeodomain-like domain;


Pssm-ID: 433164 [Multi-domain]  Cd Length: 50  Bit Score: 31.47  E-value: 8.22e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 2044503231 21 NLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELNR 60
Cdd:pfam13384  1 SARERRRARALLLLAEGLSVKEIAELLGVSRRTVYRWLKR 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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