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FimV/HubP family polar landmark protein [Vibrio crassostreae]
Protein Classification
FimV_Cterm family protein ( domain architecture ID 13396940 )
FimV_Cterm family protein
List of domain hits
Name
Accession
Description
Interval
E-value
LysM super family
cl21525 LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
68-131
1.44e-25
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
TIGR03505 :Pssm-ID: 473897 [Multi-domain]
Cd Length: 74
Bit Score: 101.26
E-value: 1.44e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045600724 68 E TLW S IA SKL RPDNSVS VQ Q TL LA I YR L NP Q AF ENQ NI HS L LPASN LR V PS L E QTR A S S TQQ AI 131
Cdd:TIGR03505 1 D TLW G IA QRV RPDNSVS LY Q MM LA L YR A NP D AF IGG NI NR L KVGQI LR I PS E E EIQ A V S PAE AI 64
FimV
COG3170 Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
40-224
3.92e-16
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain]
Cd Length: 508
Bit Score: 83.69
E-value: 3.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 40 A PTFSEPL Q R A QSNSAEP S RF Y G P T R SSE TLWSIA SK - L RP DNS VS VQ Q TLL A I YR L NP Q AF ENQ NI HS L LPASN LRVP S 118
Cdd:COG3170 128 A AAAAAAD Q P A AEAAPAA S GE Y Y P V R PGD TLWSIA AR p V RP SSG VS LD Q MMV A L YR A NP D AF IDG NI NR L KAGAV LRVP A 207
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 119 L E QTR A S S TQQ A INIMNSHL A KLD A PASKPV A SKPK AP SSD A TNTT PA KQVSSAETAKKPLSPTQSSLEQS A PTQ E MNK L 198
Cdd:COG3170 208 A E EVA A L S PAE A RQEVQAQS A DWA A YRARLA A AVEP AP AAA A PAAP PA AAAAAGPVPAAAEDTLSPEVTAA A AAE E ADA L 287
170 180
....*....|....*....|....*.
gi 2045600724 199 EKQLELSETE L LS LE EKNHQ L RLM L S 224
Cdd:COG3170 288 PEAAAELAER L AA LE AQLAE L QRL L A 313
FimV_Cterm
TIGR03504 FimV C-terminal domain; This protein is found at the extreme C-terminus of FimV from ...
1585-1628
1.73e-10
FimV C-terminal domain; This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Pssm-ID: 274614
Cd Length: 44
Bit Score: 57.58
E-value: 1.73e-10
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 2045600724 1585 G KLDLA KI YIEM S D SQ GA IK LLEE A I VD G SDDI R R EA KN L IDS L 1628
Cdd:TIGR03504 1 T KLDLA RA YIEM G D LE GA RE LLEE V I EE G DEAQ R E EA RR L LAK L 44
SH3_and_anchor super family
cl25512 SH3 domain protein; Members of this protein family have a signal peptide, a strongly conserved ...
165-304
5.32e-09
SH3 domain protein; Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.
TIGR04211 :Pssm-ID: 275056 [Multi-domain]
Cd Length: 198
Bit Score: 57.71
E-value: 5.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 165 PAKQV S SAET A KKP L SPT Q SS L EQS ap TQ E MNK L EK QL ELSET E LLS L EEKNHQ L RLM L SNV Q S E VDEL K TELSDEDRIR 244
Cdd:TIGR04211 54 LSRYL S DTPS A RER L PEL Q QE L AEL -- QE E LAE L QE QL AELRQ E NQE L KQQLST L EAE L EEL Q K E LERI K QISANAIELD 131
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045600724 245 S E VEK L --- L D E ERRK N AEI E KMAPSAMDELLSNGW L VAALAIIP G L LLGLI IVM LL G RR SKN 304
Cdd:TIGR04211 132 E E NRE L ree L A E LKQE N EAL E AENERLQENEQRRWF L YGGGVLFL G I LLGLI LPR LL P RR RRR 194
MDN1
COG5271 Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
322-1219
2.41e-07
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain]
Cd Length: 1028
Bit Score: 55.79
E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 322 VVAPI A LGD E M D DLNELSL D DDLFGTEDD A NKLFD D Q A LAEE D DVFAG L DESD L DFNLDGEDDDPFA ---- S IGE N GDLD 397
Cdd:COG5271 87 SLITA A NLE E G D IAGNAAD D SADEESDAN A KEDAT D D A DSSG D AQGDP L ATDT L GGGDLDLATKDGD ellp S LAD N DEAA 166
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 398 TNFD D LDLDSSNGISVNGEEKALGLEEMERALDKTAES A LD T DEVDFDLSD D NAMS A DDIEALLSQ E GETEDLGSNEL D Q 477
Cdd:COG5271 167 ADEG D ELAADGDDTLAVADAIEATPGGTDAVELTATLG A TV T TDPGDSVAA D DDLA A EEGASAVVE E EDASEDAVAAA D E 246
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 478 S LL D D LFALDDEDDDSFDIDALISEEQSNSPSNTEAP A S DD FDIDA L ISE Q QS D TKPA D LSN D DFDIDALISEQQSPEPA 557
Cdd:COG5271 247 T LL A D DDDTESAGATAEVGGTPDTDDEATDDADGLEA A E DD ALDAE L TAA Q AA D PESD D DAD D STLAALEGAAEDTEIAT 326
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 558 SPTANDDI D DIFAQV AA QNDQANDPFNL D NDD E I T TNLNSGL A SDDDI E NILSQF D KPIVDEEPQDS vdll D EQLAGDDV 637
Cdd:COG5271 327 ADELAAAD D EDDDDS AA EDAAEEAATAE D SAA E D T QDAEDEA A GEAAD E SEGADT D AAADEADAAAD ---- D SADDEEAS 402
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 638 DLSHSTDLL D EML E D E SG DE SE S EPLGF D SLSELEELSGLSTD D D l NIAEDST E TLDELIGDSDDD D F E LDA E ST D LLDD 717
Cdd:COG5271 403 ADGGTSPTS D TDE E E E EA DE DA S AGETE D ESTDVTSAEDDIAT D E - EADSLAD E EEEAEAELDTEE D T E SAE E DA D GDEA 481
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 718 FLVSEL S G DG LSADEADAPK AE SLDPFDDLLT T GIE D ELESEEK A FDKEL D AAFGF D NAND E SANNADVEHTPL T S E TSE 797
Cdd:COG5271 482 TDEDDA S D DG DEEEAEEDAE AE ADSDELTAEE T SAD D GADTDAA A DPEDS D EDALE D ETEG E ENAPGSDQDADE T D E PEA 561
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 798 VEP E QAS D IS E TPQSE A VSDESL D SKLIQESADVKPDND ED FNRDDFID D LFGVAPAT D ALL D DSLETTDE A li DELMTS 877
Cdd:COG5271 562 TAE E DEP D EA E AETED A TENADA D ETEESADESEEAEAS ED EAAEEEEA D DDEADADA D GAA D EEETEEEA A -- EDEAAE 639
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 878 DDN D SLP A TE E P A EPSL E NTVESEQAHFSNSNQVSSEESASSVED D ELDIDSLLS E NSDFDKPDFE E RVQ EE TAQQ E PEP 957
Cdd:COG5271 640 PET D ASE A AD E D A DAET E AEASADESEEEAEDESETSSEDAEEDA D AAAAEASDD E EETEEADEDA E TAS EE ADAE E ADT 719
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 958 KEADVQ E QR E DI A ASF E DQASPSSLNDISD D D EE TV E DWLAEAI DD VESPANVTSDFDFEPKIQGS D Q - F E DVV E SLPEQ 1036
Cdd:COG5271 720 EADGTA E EA E EA A EEA E SADEEAASLPDEA D A EE EA E EAEEAEE DD ADGLEEALEEEKADAEEAAT D E e A E AAA E EKEKV 799
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1037 EQ E QEQEQ E PEPEQ E Q E QEQ E PEPEP E PVRA A NMPEIIPNEFGVPQ D DDWLIEDETSAPE A LAET DA TPEPVAPVV E PKL 1116
Cdd:COG5271 800 AD E DQDTD E DALLD E A E ADE E EDLDG E DEET A DEALEDIEAGIAED D EEDDDAAAAKDVD A DLDL DA DLAADEHEA E EAQ 879
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1117 D AE SQVE A TPQ A EV A EQES E DEFSFD D FELP E FGEE D AL A EADAEATPESVVPAVETQA E AKSQD D EEFSFDDF E LPEFS 1196
Cdd:COG5271 880 E AE TDAD A DAD A GE A DSSG E SSAAAE D DDAA E DADS D DG A NDEDDDDDAEEERKDAEED E LGAAE D DLDALALD E AGDEE 959
890 900
....*....|....*....|...
gi 2045600724 1197 EE DA L A EADAESTSEPATPDIDS 1219
Cdd:COG5271 960 SD DA A A DDAGDDSLADDDEALAD 982
Name
Accession
Description
Interval
E-value
FimV_core
TIGR03505 FimV N-terminal domain; This region is found at, or about 200 amino acids from, the N-terminus ...
68-131
1.44e-25
FimV N-terminal domain; This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Pssm-ID: 274615 [Multi-domain]
Cd Length: 74
Bit Score: 101.26
E-value: 1.44e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045600724 68 E TLW S IA SKL RPDNSVS VQ Q TL LA I YR L NP Q AF ENQ NI HS L LPASN LR V PS L E QTR A S S TQQ AI 131
Cdd:TIGR03505 1 D TLW G IA QRV RPDNSVS LY Q MM LA L YR A NP D AF IGG NI NR L KVGQI LR I PS E E EIQ A V S PAE AI 64
FimV
COG3170 Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
40-224
3.92e-16
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain]
Cd Length: 508
Bit Score: 83.69
E-value: 3.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 40 A PTFSEPL Q R A QSNSAEP S RF Y G P T R SSE TLWSIA SK - L RP DNS VS VQ Q TLL A I YR L NP Q AF ENQ NI HS L LPASN LRVP S 118
Cdd:COG3170 128 A AAAAAAD Q P A AEAAPAA S GE Y Y P V R PGD TLWSIA AR p V RP SSG VS LD Q MMV A L YR A NP D AF IDG NI NR L KAGAV LRVP A 207
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 119 L E QTR A S S TQQ A INIMNSHL A KLD A PASKPV A SKPK AP SSD A TNTT PA KQVSSAETAKKPLSPTQSSLEQS A PTQ E MNK L 198
Cdd:COG3170 208 A E EVA A L S PAE A RQEVQAQS A DWA A YRARLA A AVEP AP AAA A PAAP PA AAAAAGPVPAAAEDTLSPEVTAA A AAE E ADA L 287
170 180
....*....|....*....|....*.
gi 2045600724 199 EKQLELSETE L LS LE EKNHQ L RLM L S 224
Cdd:COG3170 288 PEAAAELAER L AA LE AQLAE L QRL L A 313
FimV_Cterm
TIGR03504 FimV C-terminal domain; This protein is found at the extreme C-terminus of FimV from ...
1585-1628
1.73e-10
FimV C-terminal domain; This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Pssm-ID: 274614
Cd Length: 44
Bit Score: 57.58
E-value: 1.73e-10
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 2045600724 1585 G KLDLA KI YIEM S D SQ GA IK LLEE A I VD G SDDI R R EA KN L IDS L 1628
Cdd:TIGR03504 1 T KLDLA RA YIEM G D LE GA RE LLEE V I EE G DEAQ R E EA RR L LAK L 44
SH3_and_anchor
TIGR04211 SH3 domain protein; Members of this protein family have a signal peptide, a strongly conserved ...
165-304
5.32e-09
SH3 domain protein; Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.
Pssm-ID: 275056 [Multi-domain]
Cd Length: 198
Bit Score: 57.71
E-value: 5.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 165 PAKQV S SAET A KKP L SPT Q SS L EQS ap TQ E MNK L EK QL ELSET E LLS L EEKNHQ L RLM L SNV Q S E VDEL K TELSDEDRIR 244
Cdd:TIGR04211 54 LSRYL S DTPS A RER L PEL Q QE L AEL -- QE E LAE L QE QL AELRQ E NQE L KQQLST L EAE L EEL Q K E LERI K QISANAIELD 131
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045600724 245 S E VEK L --- L D E ERRK N AEI E KMAPSAMDELLSNGW L VAALAIIP G L LLGLI IVM LL G RR SKN 304
Cdd:TIGR04211 132 E E NRE L ree L A E LKQE N EAL E AENERLQENEQRRWF L YGGGVLFL G I LLGLI LPR LL P RR RRR 194
MDN1
COG5271 Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
322-1219
2.41e-07
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain]
Cd Length: 1028
Bit Score: 55.79
E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 322 VVAPI A LGD E M D DLNELSL D DDLFGTEDD A NKLFD D Q A LAEE D DVFAG L DESD L DFNLDGEDDDPFA ---- S IGE N GDLD 397
Cdd:COG5271 87 SLITA A NLE E G D IAGNAAD D SADEESDAN A KEDAT D D A DSSG D AQGDP L ATDT L GGGDLDLATKDGD ellp S LAD N DEAA 166
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 398 TNFD D LDLDSSNGISVNGEEKALGLEEMERALDKTAES A LD T DEVDFDLSD D NAMS A DDIEALLSQ E GETEDLGSNEL D Q 477
Cdd:COG5271 167 ADEG D ELAADGDDTLAVADAIEATPGGTDAVELTATLG A TV T TDPGDSVAA D DDLA A EEGASAVVE E EDASEDAVAAA D E 246
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 478 S LL D D LFALDDEDDDSFDIDALISEEQSNSPSNTEAP A S DD FDIDA L ISE Q QS D TKPA D LSN D DFDIDALISEQQSPEPA 557
Cdd:COG5271 247 T LL A D DDDTESAGATAEVGGTPDTDDEATDDADGLEA A E DD ALDAE L TAA Q AA D PESD D DAD D STLAALEGAAEDTEIAT 326
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 558 SPTANDDI D DIFAQV AA QNDQANDPFNL D NDD E I T TNLNSGL A SDDDI E NILSQF D KPIVDEEPQDS vdll D EQLAGDDV 637
Cdd:COG5271 327 ADELAAAD D EDDDDS AA EDAAEEAATAE D SAA E D T QDAEDEA A GEAAD E SEGADT D AAADEADAAAD ---- D SADDEEAS 402
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 638 DLSHSTDLL D EML E D E SG DE SE S EPLGF D SLSELEELSGLSTD D D l NIAEDST E TLDELIGDSDDD D F E LDA E ST D LLDD 717
Cdd:COG5271 403 ADGGTSPTS D TDE E E E EA DE DA S AGETE D ESTDVTSAEDDIAT D E - EADSLAD E EEEAEAELDTEE D T E SAE E DA D GDEA 481
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 718 FLVSEL S G DG LSADEADAPK AE SLDPFDDLLT T GIE D ELESEEK A FDKEL D AAFGF D NAND E SANNADVEHTPL T S E TSE 797
Cdd:COG5271 482 TDEDDA S D DG DEEEAEEDAE AE ADSDELTAEE T SAD D GADTDAA A DPEDS D EDALE D ETEG E ENAPGSDQDADE T D E PEA 561
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 798 VEP E QAS D IS E TPQSE A VSDESL D SKLIQESADVKPDND ED FNRDDFID D LFGVAPAT D ALL D DSLETTDE A li DELMTS 877
Cdd:COG5271 562 TAE E DEP D EA E AETED A TENADA D ETEESADESEEAEAS ED EAAEEEEA D DDEADADA D GAA D EEETEEEA A -- EDEAAE 639
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 878 DDN D SLP A TE E P A EPSL E NTVESEQAHFSNSNQVSSEESASSVED D ELDIDSLLS E NSDFDKPDFE E RVQ EE TAQQ E PEP 957
Cdd:COG5271 640 PET D ASE A AD E D A DAET E AEASADESEEEAEDESETSSEDAEEDA D AAAAEASDD E EETEEADEDA E TAS EE ADAE E ADT 719
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 958 KEADVQ E QR E DI A ASF E DQASPSSLNDISD D D EE TV E DWLAEAI DD VESPANVTSDFDFEPKIQGS D Q - F E DVV E SLPEQ 1036
Cdd:COG5271 720 EADGTA E EA E EA A EEA E SADEEAASLPDEA D A EE EA E EAEEAEE DD ADGLEEALEEEKADAEEAAT D E e A E AAA E EKEKV 799
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1037 EQ E QEQEQ E PEPEQ E Q E QEQ E PEPEP E PVRA A NMPEIIPNEFGVPQ D DDWLIEDETSAPE A LAET DA TPEPVAPVV E PKL 1116
Cdd:COG5271 800 AD E DQDTD E DALLD E A E ADE E EDLDG E DEET A DEALEDIEAGIAED D EEDDDAAAAKDVD A DLDL DA DLAADEHEA E EAQ 879
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1117 D AE SQVE A TPQ A EV A EQES E DEFSFD D FELP E FGEE D AL A EADAEATPESVVPAVETQA E AKSQD D EEFSFDDF E LPEFS 1196
Cdd:COG5271 880 E AE TDAD A DAD A GE A DSSG E SSAAAE D DDAA E DADS D DG A NDEDDDDDAEEERKDAEED E LGAAE D DLDALALD E AGDEE 959
890 900
....*....|....*....|...
gi 2045600724 1197 EE DA L A EADAESTSEPATPDIDS 1219
Cdd:COG5271 960 SD DA A A DDAGDDSLADDDEALAD 982
DR0291
COG1579 Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
187-274
1.02e-04
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain]
Cd Length: 236
Bit Score: 45.69
E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 187 E QS A PTQ E MNK L EKQLELS E T E L L S L E E KNHQ L RLM L SNVQS E VD EL KT EL SD - EDRIRS E VEK L LD E ERRKN AE I E KM A 265
Cdd:COG1579 90 E YE A LQK E IES L KRRISDL E D E I L E L M E RIEE L EEE L AELEA E LA EL EA EL EE k KAELDE E LAE L EA E LEELE AE R E EL A 169
....*....
gi 2045600724 266 PSAMD ELL S 274
Cdd:COG1579 170 AKIPP ELL A 178
PRK14949
PRK14949 DNA polymerase III subunits gamma and tau; Provisional
884-1248
1.78e-04
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain]
Cd Length: 944
Bit Score: 46.26
E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 884 PA TE EPAEPSLENTVES E QAHFSNSNQVSSEESASSVE D DELDIDS L LS E --------------- N S DF D KPDFEERV Q E 948
Cdd:PRK14949 410 AL TE QTTAQQQVQAANA E AVAEADASAEPADTVEQALD D ESELLAA L NA E qavilsqaqsqgfea S S SL D ADNSAVPE Q I 489
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 949 ETAQQEPEPKEADVQE Q RE D IA AS FEDQ A SPSSLNDI S DD D EETVEDWLAEAIDDVES P ANVTS D FD -- F EPKIQGSDQF 1026
Cdd:PRK14949 490 DSTAEQSVVNPSVTDT Q VD D TS AS NNSA A DNTVDDNY S AE D TLESNGLDEGDYAQDSA P LDAYQ D DY va F SSESYNALSD 569
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1027 EDVVESLPEQE Q EQEQE Q EPEPEQEQEQEQEPEPEP epvraanmpeiipnefgv PQ DDD wl I E D ETS A PEALAET D ATPE 1106
Cdd:PRK14949 570 DEQHSANVQSA Q SAAEA Q PSSQSLSPISAVTTAAAS ------------------ LA DDD -- I L D AVL A ARDSLLS D LDAL 629
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1107 PVAPVVEP K LD A ESQVEAT P QAEVAEQE S EDEF S fddfel P EFGEED A LAEA D AEATPESVVPAV E TQAEAK S QDDEEFS 1186
Cdd:PRK14949 630 SPKEGDGK K SS A DRKPKTP P SRAPPASL S KPAS S ------ P DASQTS A SFDL D PDFELATHQSVP E AALASG S APAPPPV 703
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1187 F D DFEL P EFS E ------- E D ALAE A DAEST SE PATPDID S Q - PS VE S Q P T AE PQ LE A AP Q AETAKPESEE 1248
Cdd:PRK14949 704 P D PYDR P PWE E apevasa N D GPNN A AEGNL SE SVEDASN S E l QA VE Q Q A T HQ PQ VQ A EA Q SPASTTALTQ 773
PRK13042
PRK13042 superantigen-like protein SSL4; Reviewed;
125-223
2.40e-04
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain]
Cd Length: 291
Bit Score: 45.01
E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 125 SS T Q QA I N IMNSHLA K LD AP A S K P VAS K PK AP S S DATN TTP - AKQ V SSAETAKKPLS P TQSSL E -- QS AP T Q ---- E M N K 197
Cdd:PRK13042 22 TT T T QA A N ATTPSST K VE AP Q S T P PST K VE AP Q S KPNA TTP p STK V EAPQQTPNATT P SSTKV E tp QS PT T K qvpt E I N P 101
90 100
....*....|....*....|....*.
gi 2045600724 198 LE K Q L ELSE T E l L SLE E KN h QLRLM L 223
Cdd:PRK13042 102 KF K D L RAYY T K - P SLE F KN - EIGII L 125
Name
Accession
Description
Interval
E-value
FimV_core
TIGR03505 FimV N-terminal domain; This region is found at, or about 200 amino acids from, the N-terminus ...
68-131
1.44e-25
FimV N-terminal domain; This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Pssm-ID: 274615 [Multi-domain]
Cd Length: 74
Bit Score: 101.26
E-value: 1.44e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2045600724 68 E TLW S IA SKL RPDNSVS VQ Q TL LA I YR L NP Q AF ENQ NI HS L LPASN LR V PS L E QTR A S S TQQ AI 131
Cdd:TIGR03505 1 D TLW G IA QRV RPDNSVS LY Q MM LA L YR A NP D AF IGG NI NR L KVGQI LR I PS E E EIQ A V S PAE AI 64
FimV
COG3170 Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
40-224
3.92e-16
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain]
Cd Length: 508
Bit Score: 83.69
E-value: 3.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 40 A PTFSEPL Q R A QSNSAEP S RF Y G P T R SSE TLWSIA SK - L RP DNS VS VQ Q TLL A I YR L NP Q AF ENQ NI HS L LPASN LRVP S 118
Cdd:COG3170 128 A AAAAAAD Q P A AEAAPAA S GE Y Y P V R PGD TLWSIA AR p V RP SSG VS LD Q MMV A L YR A NP D AF IDG NI NR L KAGAV LRVP A 207
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 119 L E QTR A S S TQQ A INIMNSHL A KLD A PASKPV A SKPK AP SSD A TNTT PA KQVSSAETAKKPLSPTQSSLEQS A PTQ E MNK L 198
Cdd:COG3170 208 A E EVA A L S PAE A RQEVQAQS A DWA A YRARLA A AVEP AP AAA A PAAP PA AAAAAGPVPAAAEDTLSPEVTAA A AAE E ADA L 287
170 180
....*....|....*....|....*.
gi 2045600724 199 EKQLELSETE L LS LE EKNHQ L RLM L S 224
Cdd:COG3170 288 PEAAAELAER L AA LE AQLAE L QRL L A 313
FimV_Cterm
TIGR03504 FimV C-terminal domain; This protein is found at the extreme C-terminus of FimV from ...
1585-1628
1.73e-10
FimV C-terminal domain; This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Pssm-ID: 274614
Cd Length: 44
Bit Score: 57.58
E-value: 1.73e-10
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 2045600724 1585 G KLDLA KI YIEM S D SQ GA IK LLEE A I VD G SDDI R R EA KN L IDS L 1628
Cdd:TIGR03504 1 T KLDLA RA YIEM G D LE GA RE LLEE V I EE G DEAQ R E EA RR L LAK L 44
SH3_and_anchor
TIGR04211 SH3 domain protein; Members of this protein family have a signal peptide, a strongly conserved ...
165-304
5.32e-09
SH3 domain protein; Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.
Pssm-ID: 275056 [Multi-domain]
Cd Length: 198
Bit Score: 57.71
E-value: 5.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 165 PAKQV S SAET A KKP L SPT Q SS L EQS ap TQ E MNK L EK QL ELSET E LLS L EEKNHQ L RLM L SNV Q S E VDEL K TELSDEDRIR 244
Cdd:TIGR04211 54 LSRYL S DTPS A RER L PEL Q QE L AEL -- QE E LAE L QE QL AELRQ E NQE L KQQLST L EAE L EEL Q K E LERI K QISANAIELD 131
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2045600724 245 S E VEK L --- L D E ERRK N AEI E KMAPSAMDELLSNGW L VAALAIIP G L LLGLI IVM LL G RR SKN 304
Cdd:TIGR04211 132 E E NRE L ree L A E LKQE N EAL E AENERLQENEQRRWF L YGGGVLFL G I LLGLI LPR LL P RR RRR 194
MDN1
COG5271 Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
322-1219
2.41e-07
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain]
Cd Length: 1028
Bit Score: 55.79
E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 322 VVAPI A LGD E M D DLNELSL D DDLFGTEDD A NKLFD D Q A LAEE D DVFAG L DESD L DFNLDGEDDDPFA ---- S IGE N GDLD 397
Cdd:COG5271 87 SLITA A NLE E G D IAGNAAD D SADEESDAN A KEDAT D D A DSSG D AQGDP L ATDT L GGGDLDLATKDGD ellp S LAD N DEAA 166
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 398 TNFD D LDLDSSNGISVNGEEKALGLEEMERALDKTAES A LD T DEVDFDLSD D NAMS A DDIEALLSQ E GETEDLGSNEL D Q 477
Cdd:COG5271 167 ADEG D ELAADGDDTLAVADAIEATPGGTDAVELTATLG A TV T TDPGDSVAA D DDLA A EEGASAVVE E EDASEDAVAAA D E 246
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 478 S LL D D LFALDDEDDDSFDIDALISEEQSNSPSNTEAP A S DD FDIDA L ISE Q QS D TKPA D LSN D DFDIDALISEQQSPEPA 557
Cdd:COG5271 247 T LL A D DDDTESAGATAEVGGTPDTDDEATDDADGLEA A E DD ALDAE L TAA Q AA D PESD D DAD D STLAALEGAAEDTEIAT 326
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 558 SPTANDDI D DIFAQV AA QNDQANDPFNL D NDD E I T TNLNSGL A SDDDI E NILSQF D KPIVDEEPQDS vdll D EQLAGDDV 637
Cdd:COG5271 327 ADELAAAD D EDDDDS AA EDAAEEAATAE D SAA E D T QDAEDEA A GEAAD E SEGADT D AAADEADAAAD ---- D SADDEEAS 402
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 638 DLSHSTDLL D EML E D E SG DE SE S EPLGF D SLSELEELSGLSTD D D l NIAEDST E TLDELIGDSDDD D F E LDA E ST D LLDD 717
Cdd:COG5271 403 ADGGTSPTS D TDE E E E EA DE DA S AGETE D ESTDVTSAEDDIAT D E - EADSLAD E EEEAEAELDTEE D T E SAE E DA D GDEA 481
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 718 FLVSEL S G DG LSADEADAPK AE SLDPFDDLLT T GIE D ELESEEK A FDKEL D AAFGF D NAND E SANNADVEHTPL T S E TSE 797
Cdd:COG5271 482 TDEDDA S D DG DEEEAEEDAE AE ADSDELTAEE T SAD D GADTDAA A DPEDS D EDALE D ETEG E ENAPGSDQDADE T D E PEA 561
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 798 VEP E QAS D IS E TPQSE A VSDESL D SKLIQESADVKPDND ED FNRDDFID D LFGVAPAT D ALL D DSLETTDE A li DELMTS 877
Cdd:COG5271 562 TAE E DEP D EA E AETED A TENADA D ETEESADESEEAEAS ED EAAEEEEA D DDEADADA D GAA D EEETEEEA A -- EDEAAE 639
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 878 DDN D SLP A TE E P A EPSL E NTVESEQAHFSNSNQVSSEESASSVED D ELDIDSLLS E NSDFDKPDFE E RVQ EE TAQQ E PEP 957
Cdd:COG5271 640 PET D ASE A AD E D A DAET E AEASADESEEEAEDESETSSEDAEEDA D AAAAEASDD E EETEEADEDA E TAS EE ADAE E ADT 719
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 958 KEADVQ E QR E DI A ASF E DQASPSSLNDISD D D EE TV E DWLAEAI DD VESPANVTSDFDFEPKIQGS D Q - F E DVV E SLPEQ 1036
Cdd:COG5271 720 EADGTA E EA E EA A EEA E SADEEAASLPDEA D A EE EA E EAEEAEE DD ADGLEEALEEEKADAEEAAT D E e A E AAA E EKEKV 799
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1037 EQ E QEQEQ E PEPEQ E Q E QEQ E PEPEP E PVRA A NMPEIIPNEFGVPQ D DDWLIEDETSAPE A LAET DA TPEPVAPVV E PKL 1116
Cdd:COG5271 800 AD E DQDTD E DALLD E A E ADE E EDLDG E DEET A DEALEDIEAGIAED D EEDDDAAAAKDVD A DLDL DA DLAADEHEA E EAQ 879
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1117 D AE SQVE A TPQ A EV A EQES E DEFSFD D FELP E FGEE D AL A EADAEATPESVVPAVETQA E AKSQD D EEFSFDDF E LPEFS 1196
Cdd:COG5271 880 E AE TDAD A DAD A GE A DSSG E SSAAAE D DDAA E DADS D DG A NDEDDDDDAEEERKDAEED E LGAAE D DLDALALD E AGDEE 959
890 900
....*....|....*....|...
gi 2045600724 1197 EE DA L A EADAESTSEPATPDIDS 1219
Cdd:COG5271 960 SD DA A A DDAGDDSLADDDEALAD 982
MDN1
COG5271 Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
395-1416
4.69e-07
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain]
Cd Length: 1028
Bit Score: 55.02
E-value: 4.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 395 D LD T NFD DLD LDSSNGISVNGEEKAL GL EEMERALDKTAESAL DTD EVDFD L S D DN A M S ADDIEAL L SQEGETEDLGSNE 474
Cdd:COG5271 4 D DR T VIL DLD NSLAGRDLEDDDADLA GL DTQSETASEREDKLP DTD KDLLI L T D AD A A S DEGKLLD L KSADGAALSAESD 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 475 LDQ SL LDDLFALDDEDDDSFDI D ALIS E EQS N SPSNTEAP A SDDF D IDALISEQQSDTKPADLSNDDFDIDA L I S EQQSP 554
Cdd:COG5271 84 AGA SL ITAANLEEGDIAGNAAD D SADE E SDA N AKEDATDD A DSSG D AQGDPLATDTLGGGDLDLATKDGDEL L P S LADND 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 555 E P A ------- SPTAN D DIDDIF A QV A AQNDQANDPFNLDNDDEI TT NLNSGL A S DDD IENILSQFDKPIVDEEPQ D S V DL 627
Cdd:COG5271 164 E A A adegdel AADGD D TLAVAD A IE A TPGGTDAVELTATLGATV TT DPGDSV A A DDD LAAEEGASAVVEEEDASE D A V AA 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 628 L DE Q L AG DD V D LSHSTDLLDEMLEDESG DE SESEPL G FDSLSELEELSG L STDDDLNIAE D STETLDE L IGDSDDDDFEL 707
Cdd:COG5271 244 A DE T L LA DD D D TESAGATAEVGGTPDTD DE ATDDAD G LEAAEDDALDAE L TAAQAADPES D DDADDST L AALEGAAEDTE 323
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 708 D A ESTD L LDDFLVSELSGDGLS A D E AD A PKAE S LDPFDDLLTTGIED E LES E EKAF D KELD A AFGFDN A N D ESANNADVE 787
Cdd:COG5271 324 I A TADE L AAADDEDDDDSAAED A A E EA A TAED S AAEDTQDAEDEAAG E AAD E SEGA D TDAA A DEADAA A D D SADDEEASA 403
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 788 HTPLTSETSEV E P E QAS D ISETPQSEAVSDESLD S KLIQESA D VKP D NDE D FNRDDFIDDLFGVAPATDALLD D SL E T TD 867
Cdd:COG5271 404 DGGTSPTSDTD E E E EEA D EDASAGETEDESTDVT S AEDDIAT D EEA D SLA D EEEEAEAELDTEEDTESAEEDA D GD E A TD 483
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 868 E ALIDELMTSDDNDSLPAT E EPAEPSLENTVESEQAHFSNSNQVSSEESASSV ED DELDIDSLLSENS D F D KP D FE E RVQ 947
Cdd:COG5271 484 E DDASDDGDEEEAEEDAEA E ADSDELTAEETSADDGADTDAAADPEDSDEDAL ED ETEGEENAPGSDQ D A D ET D EP E ATA 563
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 948 EE TAQQ E P E PKEA D VQ E QRE -- DIAA S FEDQASPSSLN D ISDDD EE TVE D WLA ---- E A I D DV E SPANVTS D FDF EP KIQ 1021
Cdd:COG5271 564 EE DEPD E A E AETE D AT E NAD ad ETEE S ADESEEAEASE D EAAEE EE ADD D EAD adad G A A D EE E TEEEAAE D EAA EP ETD 643
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1022 G S DQFEDVVESLP E Q E QEQEQEQ E PEPEQEQEQEQEP E PEPEPVR A ANMPEI ip N E FGVPQD D DWLIED E TS A P EA LA E T 1101
Cdd:COG5271 644 A S EAADEDADAET E A E ASADESE E EAEDESETSSEDA E EDADAAA A EASDDE -- E E TEEADE D AETASE E AD A E EA DT E A 721
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1102 D A T P E PVAPVV E PKLD A ESQVEAT P QAEV AE Q E S E DEFSFDDFELPEFG E EDALAE ADAE AT pesvvpav E T QA EA KSQD 1181
Cdd:COG5271 722 D G T A E EAEEAA E EAES A DEEAASL P DEAD AE E E A E EAEEAEEDDADGLE E ALEEEK ADAE EA -------- A T DE EA EAAA 793
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1182 D E EFSFD D FELPEFSEEDALAEADA E STSEPATPDIDSQPSV E SQPTAEPQLEAAPQAET A KPESEEEFSF D DFELPEFG 1261
Cdd:COG5271 794 E E KEKVA D EDQDTDEDALLDEAEAD E EEDLDGEDEETADEAL E DIEAGIAEDDEEDDDAA A AKDVDADLDL D ADLAADEH 873
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1262 E EDALA E VVSEP D EAQLEQDLSDGT E KFEFDDL D LPEY D EE S AKADSVL DD IEQSSA E PVAED E GVEFNEL D LPEYGEDE 1341
Cdd:COG5271 874 E AEEAQ E AETDA D ADADAGEADSSG E SSAAAED D DAAE D AD S DDGANDE DD DDDAEE E RKDAE E DELGAAE D DLDALALD 953
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2045600724 1342 AIS D AFAEKPTPLTSFSPQGEEQ D ALHDLFSNPQSFSHA E DFSNAQDS E LA G FAQPE E SLSAASELNSTP A AVQD 1416
Cdd:COG5271 954 EAG D EESDDAAADDAGDDSLADD D EALADAADDAEADDS E LDASESTG E AE G DEDDD E LEDGEAAAGEAT A DLAA 1028
MDN1
COG5271 Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
323-1311
5.95e-07
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain]
Cd Length: 1028
Bit Score: 54.64
E-value: 5.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 323 VAPI A LG DE MDD L NEL S L D DDLFGT E D DA NKLFDDQ A LA EE D D VFAGLDESDL D FNL D GEDDDPFASIGENGDLDTNFDD 402
Cdd:COG5271 56 TDAD A AS DE GKL L DLK S A D GAALSA E S DA GASLITA A NL EE G D IAGNAADDSA D EES D ANAKEDATDDADSSGDAQGDPL 135
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 403 LDLDSSN G ISVNGEEKALG L EEMERAL D KT A ESAL D TDEV D F D LSDDN A MSADDIEALLSQEGE T ED LG SNELDQSLLDD 482
Cdd:COG5271 136 ATDTLGG G DLDLATKDGDE L LPSLADN D EA A ADEG D ELAA D G D DTLAV A DAIEATPGGTDAVEL T AT LG ATVTTDPGDSV 215
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 483 LFAL D DEDDDSFDIDALISEEQSNSPSNTEAPASD D F D IDALISEQQSDTKPA D LSNDDF D IDALISEQQSPEPASPTAN 562
Cdd:COG5271 216 AADD D LAAEEGASAVVEEEDASEDAVAAADETLLA D D D DTESAGATAEVGGTP D TDDEAT D DADGLEAAEDDALDAELTA 295
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 563 DDID D IFAQVA A QNDQANDPFNLDN D D EI T T NLNSGL A S D D D IEN ils QFDKPIVD E EPQDSVDLLDEQLAGD D VDLSHS 642
Cdd:COG5271 296 AQAA D PESDDD A DDSTLAALEGAAE D T EI A T ADELAA A D D E D DDD --- SAAEDAAE E AATAEDSAAEDTQDAE D EAAGEA 372
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 643 T D LLDEMLE D ESG DE SESEPLGFDSLS E LEELS G L S TDD D LNIA E DSTETLDELIGDS D DDD f ELDAEST D LLD D FLVSE 722
Cdd:COG5271 373 A D ESEGADT D AAA DE ADAAADDSADDE E ASADG G T S PTS D TDEE E EEADEDASAGETE D EST - DVTSAED D IAT D EEADS 451
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 723 L SGDGLS A DEADAPKAESLDPFD D LLTTGIE DE LESEEKAFDK E LDAAFGFDNAN DE SANNADVEHTPLTSETSEVEPEQ 802
Cdd:COG5271 452 L ADEEEE A EAELDTEEDTESAEE D ADGDEAT DE DDASDDGDEE E AEEDAEAEADS DE LTAEETSADDGADTDAAADPEDS 531
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 803 AS D IS -- ET PQS E AVSDESL D SKLIQ E SADVKPDNDE D FNRDDFI D DLFGVAPATDALLD D SL E TTDEALIDELMTSDDN 880
Cdd:COG5271 532 DE D AL ed ET EGE E NAPGSDQ D ADETD E PEATAEEDEP D EAEAETE D ATENADADETEESA D ES E EAEASEDEAAEEEEAD 611
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 881 D SLPATEEPAEPSL E N T V E SEQAHFSNSNQVSSE E S A SSVE D D E LDIDS llse NS D FDKPDF E ERVQEETAQQ E PEPKE A 960
Cdd:COG5271 612 D DEADADADGAADE E E T E E EAAEDEAAEPETDAS E A A DEDA D A E TEAEA ---- SA D ESEEEA E DESETSSEDA E EDADA A 687
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 961 DVQEQREDIAASFE D QASPSSLNDISDDDEE T VE D WL AE AIDDVESP A N v TS D FDFEPKIQGS D QF E DVV E SLPEQ E QEQ 1040
Cdd:COG5271 688 AAEASDDEEETEEA D EDAETASEEADAEEAD T EA D GT AE EAEEAAEE A E - SA D EEAASLPDEA D AE E EAE E AEEAE E DDA 766
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1041 EQEQ E PEP E QEQEQ E QE pepepepvr A ANMPEIIPN E FGVPQD D DWLIE DE TSAPEALAETDATPEPVAPVVEPKLDA E S 1120
Cdd:COG5271 767 DGLE E ALE E EKADA E EA --------- A TDEEAEAAA E EKEKVA D EDQDT DE DALLDEAEADEEEDLDGEDEETADEAL E D 837
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1121 QVEATPQAEVAEQESEDEFSF D DFELPEFGEEDALA EA DAEATP E SVVP A VETQA EA K S QDDEEFSFD D FELP E FSEE D A 1200
Cdd:COG5271 838 IEAGIAEDDEEDDDAAAAKDV D ADLDLDADLAADEH EA EEAQEA E TDAD A DADAG EA D S SGESSAAAE D DDAA E DADS D D 917
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1201 L A EADAESTSEPATPDIDSQPSVESQPTAEPQ L EAAPQAETAKPESEEEFSF DD FELPEFGEEDAL A EVVSEP D EAQLEQ 1280
Cdd:COG5271 918 G A NDEDDDDDAEEERKDAEEDELGAAEDDLDA L ALDEAGDEESDDAAADDAG DD SLADDDEALADA A DDAEAD D SELDAS 997
970 980 990
....*....|....*....|....*....|.
gi 2045600724 1281 DLSDGT E KF E F DD LDLPEYDEESAKADSVLD 1311
Cdd:COG5271 998 ESTGEA E GD E D DD ELEDGEAAAGEATADLAA 1028
MDN1
COG5271 Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
438-1440
1.03e-06
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain]
Cd Length: 1028
Bit Score: 53.87
E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 438 D TDE V DF DL SDDN A MSADDIEALLSQEGE T EDLGSN E LDQS L L D DLFA L DDED D DSFDI D ALISEEQSNSPSNTEAPA SD 517
Cdd:COG5271 4 D DRT V IL DL DNSL A GRDLEDDDADLAGLD T QSETAS E REDK L P D TDKD L LILT D ADAAS D EGKLLDLKSADGAALSAE SD 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 518 DFDIDALISEQQSDTKPADLSN D DF D IDALISEQQSPEPASPTAN D DID D IF A QVAAQNDQANDPFNLDNDDEITTNL N S 597
Cdd:COG5271 84 AGASLITAANLEEGDIAGNAAD D SA D EESDANAKEDATDDADSSG D AQG D PL A TDTLGGGDLDLATKDGDELLPSLAD N D 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 598 GL A S D DDI E NILSQF D KPI V DEEPQDSVDLL D EQLAGDDVDLSHS TD LL D EMLE D ESGDES E SEPLGFDSLSEL E ELSGL 677
Cdd:COG5271 164 EA A A D EGD E LAADGD D TLA V ADAIEATPGGT D AVELTATLGATVT TD PG D SVAA D DDLAAE E GASAVVEEEDAS E DAVAA 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 678 STDDD L N iae D STE T LDELIGDSDDDDFEL D A E S TD LL D DFLVS E LSGDGLSADE A D A PKA ES L D PF DD LLTTGI E DEL E 757
Cdd:COG5271 244 ADETL L A --- D DDD T ESAGATAEVGGTPDT D D E A TD DA D GLEAA E DDALDAELTA A Q A ADP ES D D DA DD STLAAL E GAA E 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 758 SE E K A FDK EL D AA FGF D NANDESANN A DVEH T PLT S ETSEVEPEQASDIS E TPQSEAVS D ESLDSKLIQES AD VKP D ND E 837
Cdd:COG5271 321 DT E I A TAD EL A AA DDE D DDDSAAEDA A EEAA T AED S AAEDTQDAEDEAAG E AADESEGA D TDAAADEADAA AD DSA D DE E 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 838 DFNRDDFIDDLFGVAPATD A LL D D S LET T DEALI D ELMTS DD NDSLPATEEP A EPSL E NTV E seqahfs NSNQVSS E ESA 917
Cdd:COG5271 401 ASADGGTSPTSDTDEEEEE A DE D A S AGE T EDEST D VTSAE DD IATDEEADSL A DEEE E AEA E ------- LDTEEDT E SAE 473
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 918 SSVED DE LDIDSLL S ENS D FDKPDFEERVQEETAQQEP E PKE AD VQEQ r E D I AA SF ED QASPSSLNDISDDDEETVE D WL 997
Cdd:COG5271 474 EDADG DE ATDEDDA S DDG D EEEAEEDAEAEADSDELTA E ETS AD DGAD - T D A AA DP ED SDEDALEDETEGEENAPGS D QD 552
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 998 A EAI D DV E SP A NVTSDFDF E PKIQGSDQFE D VV E SLPEQEQEQ E Q E QEPEPEQ E Q E QEQEP E PEPEPVR AA NMP E IIPNE 1077
Cdd:COG5271 553 A DET D EP E AT A EEDEPDEA E AETEDATENA D AD E TEESADESE E A E ASEDEAA E E E EADDD E ADADADG AA DEE E TEEEA 632
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1078 ------------- FGVPQ D D D WLI E D E T SA P E ALA E TDATP E PVAPVV E PKL DA ESQVEATPQA E VA E QESED E FSFDDF 1144
Cdd:COG5271 633 aedeaaepetdas EAADE D A D AET E A E A SA D E SEE E AEDES E TSSEDA E EDA DA AAAEASDDEE E TE E ADEDA E TASEEA 712
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1145 ELP E FGE E DALAEAD AE ATP E SVVP A V E TQ A EAKSQD D E E FSFDDF E LP E FSEE D A L A EA DA E STSEPATPDI D SQPSVE 1224
Cdd:COG5271 713 DAE E ADT E ADGTAEE AE EAA E EAES A D E EA A SLPDEA D A E EEAEEA E EA E EDDA D G L E EA LE E EKADAEEAAT D EEAEAA 792
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1225 SQPTAEPQL E AAPQA E T A KPESE E EFSFD D FELPEFGEE D ALA E VVSEPDEAQL E Q D LSDGTE K FEFD DLDL PEYDEESA 1304
Cdd:COG5271 793 AEEKEKVAD E DQDTD E D A LLDEA E ADEEE D LDGEDEETA D EAL E DIEAGIAEDD E E D DDAAAA K DVDA DLDL DADLAADE 872
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1305 KADSVLDDI E QSSAEPVAED E GVEFN E LDLPEYGE D E A ISDAFAEKPTPLTSFSPQG EE QDALHDLFSNPQSFSHAEDFS 1384
Cdd:COG5271 873 HEAEEAQEA E TDADADADAG E ADSSG E SSAAAEDD D A A EDADSDDGANDEDDDDDAE EE RKDAEEDELGAAEDDLDALAL 952
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....*.
gi 2045600724 1385 NAQDS E LAGF A QPEESLSAASELNSTPA A VQDEPL E GF D DFDETALAELLS E DVQ D 1440
Cdd:COG5271 953 DEAGD E ESDD A AADDAGDDSLADDDEAL A DAADDA E AD D SELDASESTGEA E GDE D 1008
DR0291
COG1579 Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
187-274
1.02e-04
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain]
Cd Length: 236
Bit Score: 45.69
E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 187 E QS A PTQ E MNK L EKQLELS E T E L L S L E E KNHQ L RLM L SNVQS E VD EL KT EL SD - EDRIRS E VEK L LD E ERRKN AE I E KM A 265
Cdd:COG1579 90 E YE A LQK E IES L KRRISDL E D E I L E L M E RIEE L EEE L AELEA E LA EL EA EL EE k KAELDE E LAE L EA E LEELE AE R E EL A 169
....*....
gi 2045600724 266 PSAMD ELL S 274
Cdd:COG1579 170 AKIPP ELL A 178
PRK14949
PRK14949 DNA polymerase III subunits gamma and tau; Provisional
884-1248
1.78e-04
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain]
Cd Length: 944
Bit Score: 46.26
E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 884 PA TE EPAEPSLENTVES E QAHFSNSNQVSSEESASSVE D DELDIDS L LS E --------------- N S DF D KPDFEERV Q E 948
Cdd:PRK14949 410 AL TE QTTAQQQVQAANA E AVAEADASAEPADTVEQALD D ESELLAA L NA E qavilsqaqsqgfea S S SL D ADNSAVPE Q I 489
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 949 ETAQQEPEPKEADVQE Q RE D IA AS FEDQ A SPSSLNDI S DD D EETVEDWLAEAIDDVES P ANVTS D FD -- F EPKIQGSDQF 1026
Cdd:PRK14949 490 DSTAEQSVVNPSVTDT Q VD D TS AS NNSA A DNTVDDNY S AE D TLESNGLDEGDYAQDSA P LDAYQ D DY va F SSESYNALSD 569
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1027 EDVVESLPEQE Q EQEQE Q EPEPEQEQEQEQEPEPEP epvraanmpeiipnefgv PQ DDD wl I E D ETS A PEALAET D ATPE 1106
Cdd:PRK14949 570 DEQHSANVQSA Q SAAEA Q PSSQSLSPISAVTTAAAS ------------------ LA DDD -- I L D AVL A ARDSLLS D LDAL 629
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1107 PVAPVVEP K LD A ESQVEAT P QAEVAEQE S EDEF S fddfel P EFGEED A LAEA D AEATPESVVPAV E TQAEAK S QDDEEFS 1186
Cdd:PRK14949 630 SPKEGDGK K SS A DRKPKTP P SRAPPASL S KPAS S ------ P DASQTS A SFDL D PDFELATHQSVP E AALASG S APAPPPV 703
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1187 F D DFEL P EFS E ------- E D ALAE A DAEST SE PATPDID S Q - PS VE S Q P T AE PQ LE A AP Q AETAKPESEE 1248
Cdd:PRK14949 704 P D PYDR P PWE E apevasa N D GPNN A AEGNL SE SVEDASN S E l QA VE Q Q A T HQ PQ VQ A EA Q SPASTTALTQ 773
PRK13042
PRK13042 superantigen-like protein SSL4; Reviewed;
125-223
2.40e-04
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain]
Cd Length: 291
Bit Score: 45.01
E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 125 SS T Q QA I N IMNSHLA K LD AP A S K P VAS K PK AP S S DATN TTP - AKQ V SSAETAKKPLS P TQSSL E -- QS AP T Q ---- E M N K 197
Cdd:PRK13042 22 TT T T QA A N ATTPSST K VE AP Q S T P PST K VE AP Q S KPNA TTP p STK V EAPQQTPNATT P SSTKV E tp QS PT T K qvpt E I N P 101
90 100
....*....|....*....|....*.
gi 2045600724 198 LE K Q L ELSE T E l L SLE E KN h QLRLM L 223
Cdd:PRK13042 102 KF K D L RAYY T K - P SLE F KN - EIGII L 125
BMS1
COG5192 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and ...
726-999
1.48e-03
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227519 [Multi-domain]
Cd Length: 1077
Bit Score: 43.58
E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 726 D G LS A D EA D APKA esl D PFD D LLT TG IEDELES E EKAFDK E L da AF GF D NAN DES AN N ADVEHTPLTSETSEVEPEQASD 805
Cdd:COG5192 426 D E LS F D DS D VSTS --- D ENE D VDF TG KKGAINN E DESDNE E V -- AF DS D SQF DES EG N LRWKEGLASKLAYSQSGKRGRN 500
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 806 I SETPQS E AV S D E SLDSKLIQ ESA DVK pdn DE D FNRD D FID D L F G V APATDALLDDSL E TTD E ALID EL mt SDDND SL PA 885
Cdd:COG5192 501 I QKIFYD E SL S P E ECIEEYKG ESA KSS --- ES D LVVQ D EPE D F F D V SKVANESISSNH E KLM E SEFE EL -- KKKWS SL AQ 575
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 886 TEEP - AEPSLENTV E S E Q ahfsnsnqvssees ASSVE D DELDIDS L LS E NSDF D KPDF E E R VQEE TA QQ E PEPK E A D VQE 964
Cdd:COG5192 576 LKSR f QKDATLDSI E G E E -------------- ELIQD D EKGNFED L ED E ENSS D NEME E S R GSSV TA EN E ESAD E V D YET 641
250 260 270
....*....|....*....|....*....|....*
gi 2045600724 965 Q RE DI A ASF E DQASPSS L ND i SD D D E ETVE DW LA E 999
Cdd:COG5192 642 E RE EN A RKK E ELRGNFE L EE - RG D P E KKDV DW YT E 675
COG2433
COG2433 Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
172-284
5.07e-03
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain]
Cd Length: 644
Bit Score: 41.38
E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 172 A E TAKKPLSPTQSSL E QSAPTQ E MNK LE K Q L E LS E T E LLS LE EKNHQLR lmlsnvq SEVDE L KT ELS D ------- E D R IR 244
Cdd:COG2433 392 E E EPEAEREKEHEER E LTEEEE E IRR LE E Q V E RL E A E VEE LE AELEEKD ------- ERIER L ER ELS E arseerr E I R KD 464
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2045600724 245 S E VEK L ---------- L D EER RKNA E ---- I E KM ap SAMDE L LSN G W LV AALAI 284
Cdd:COG2433 465 R E ISR L dreierlere L E EER ERIE E lkrk L E RL -- KELWK L EHS G E LV PVKVV 516
rne
PRK10811 ribonuclease E; Reviewed
1081-1277
5.54e-03
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain]
Cd Length: 1068
Bit Score: 41.56
E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1081 PQD DD wli ED E TSAP E ALAETDATP E PVAPVVEPKLDAESQ VEA TPQAEVAEQESEDE fsfddfelpefge EDALAEADA 1160
Cdd:PRK10811 850 PQD VQ --- VE E QREA E EVQVQPVVA E VPVAAAVEPVVSAPV VEA VAEVVEEPVVVAEP ------------- QPEEVVVVE 913
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1161 EAT PE SVVPA V ET Q AEAKSQD D E efsfddfelpefseed A L A EAD AE ST s EP ATPDI D SQPSV E SQPTAEPQLE A A P QAE 1240
Cdd:PRK10811 914 TTH PE VIAAP V TE Q PQVITES D V ---------------- A V A QEV AE HA - EP VVEPQ D ETADI E EAAETAEVVV A E P EVV 976
170 180 190
....*....|....*....|....*....|....*..
gi 2045600724 1241 TAKPESEEE fsfdd FELP E FGEED A LAEV V SEPDEAQ 1277
Cdd:PRK10811 977 AQPAAPVVA ----- EVAA E VETVT A VEPE V APAQVPE 1008
rne
PRK10811 ribonuclease E; Reviewed
1080-1247
6.61e-03
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain]
Cd Length: 1068
Bit Score: 41.18
E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1080 V PQDD D WLI E DETS A P E ALAETDATPE PVA PV VEP k LDAESQ VEA TPQAEVAEQESEDEFSFDDFELPE fg EEDALAE A D 1159
Cdd:PRK10811 847 V VRPQ D VQV E EQRE A E E VQVQPVVAEV PVA AA VEP - VVSAPV VEA VAEVVEEPVVVAEPQPEEVVVVET -- THPEVIA A P 923
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2045600724 1160 AEAT P ESVVPAVETQ A EAKSQDD E EFSFDD fel P E FSEEDAL AE ADAESTS EP ATPDIDSQ P S V ESQPTAEPQLE A APQA 1239
Cdd:PRK10811 924 VTEQ P QVITESDVAV A QEVAEHA E PVVEPQ --- D E TADIEEA AE TAEVVVA EP EVVAQPAA P V V AEVAAEVETVT A VEPE 1000
....*...
gi 2045600724 1240 ETAKPES E 1247
Cdd:PRK10811 1001 VAPAQVP E 1008
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
