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Conserved domains on  [gi|2045851279|ref|WP_214036373|]
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rubredoxin [Methanospirillum sp.]

Protein Classification

rubredoxin( domain architecture ID 11448379)

rubredoxin is a small nonheme, iron binding protein lacking an acid-labile sulfide that contains a [Fe(SCys)4] center and participates in electron transfer

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NorV COG1773
Flavorubredoxin [Inorganic ion transport and metabolism];
14-63 1.71e-20

Flavorubredoxin [Inorganic ion transport and metabolism];


:

Pssm-ID: 441379 [Multi-domain]  Cd Length: 53  Bit Score: 75.59  E-value: 1.71e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 2045851279 14 IWRCNPCRWYYYPDKGDPTQNIPPGTLFEDLPSTWRCPICKEPRSMFTLI 63
Cdd:COG1773    3 KYQCKVCGYVYDPAEGDPENGIPPGTPFEDLPDDWVCPVCGAGKEDFEPV 52
 
Name Accession Description Interval E-value
NorV COG1773
Flavorubredoxin [Inorganic ion transport and metabolism];
14-63 1.71e-20

Flavorubredoxin [Inorganic ion transport and metabolism];


Pssm-ID: 441379 [Multi-domain]  Cd Length: 53  Bit Score: 75.59  E-value: 1.71e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 2045851279 14 IWRCNPCRWYYYPDKGDPTQNIPPGTLFEDLPSTWRCPICKEPRSMFTLI 63
Cdd:COG1773    3 KYQCKVCGYVYDPAEGDPENGIPPGTPFEDLPDDWVCPVCGAGKEDFEPV 52
Rubredoxin pfam00301
Rubredoxin;
15-60 4.64e-16

Rubredoxin;


Pssm-ID: 459752 [Multi-domain]  Cd Length: 46  Bit Score: 64.19  E-value: 4.64e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 2045851279 15 WRCNPCRWYYYPDKGDPTQNIPPGTLFEDLPSTWRCPICKEPRSMF 60
Cdd:pfam00301  1 YECKVCGYVYDPAKGDPDNGIPPGTPFEDLPDDWVCPDCGAGKDQF 46
rubredoxin cd00730
Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are ...
 15-60 5.32e-15

Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.


Pssm-ID: 238372 [Multi-domain]  Cd Length: 50  Bit Score: 61.55  E-value: 5.32e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 2045851279 15 WRCNPCRWYYYPDKGDPTQNIPPGTLFEDLPSTWRCPICKEPRSMF 60
Cdd:cd00730    2 YECRICGYIYDPAEGDPDEGIPPGTPFEDLPDDWVCPVCGAGKDDF 47
PRK05452 PRK05452
anaerobic nitric oxide reductase flavorubredoxin; Provisional
 15-53 4.93e-10

anaerobic nitric oxide reductase flavorubredoxin; Provisional


Pssm-ID: 235475 [Multi-domain]  Cd Length: 479  Bit Score: 52.84  E-value: 4.93e-10
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2045851279  15 WRCNPCRWYYYPDKGDPTQNIPPGTLFEDLPSTWRCPIC 53
Cdd:PRK05452  426 MQCSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPEC 464
 
Name Accession Description Interval E-value
NorV COG1773
Flavorubredoxin [Inorganic ion transport and metabolism];
14-63 1.71e-20

Flavorubredoxin [Inorganic ion transport and metabolism];


Pssm-ID: 441379 [Multi-domain]  Cd Length: 53  Bit Score: 75.59  E-value: 1.71e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 2045851279 14 IWRCNPCRWYYYPDKGDPTQNIPPGTLFEDLPSTWRCPICKEPRSMFTLI 63
Cdd:COG1773    3 KYQCKVCGYVYDPAEGDPENGIPPGTPFEDLPDDWVCPVCGAGKEDFEPV 52
Rubredoxin pfam00301
Rubredoxin;
15-60 4.64e-16

Rubredoxin;


Pssm-ID: 459752 [Multi-domain]  Cd Length: 46  Bit Score: 64.19  E-value: 4.64e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 2045851279 15 WRCNPCRWYYYPDKGDPTQNIPPGTLFEDLPSTWRCPICKEPRSMF 60
Cdd:pfam00301  1 YECKVCGYVYDPAKGDPDNGIPPGTPFEDLPDDWVCPDCGAGKDQF 46
rubredoxin cd00730
Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are ...
 15-60 5.32e-15

Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.


Pssm-ID: 238372 [Multi-domain]  Cd Length: 50  Bit Score: 61.55  E-value: 5.32e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 2045851279 15 WRCNPCRWYYYPDKGDPTQNIPPGTLFEDLPSTWRCPICKEPRSMF 60
Cdd:cd00730    2 YECRICGYIYDPAEGDPDEGIPPGTPFEDLPDDWVCPVCGAGKDDF 47
PRK05452 PRK05452
anaerobic nitric oxide reductase flavorubredoxin; Provisional
 15-53 4.93e-10

anaerobic nitric oxide reductase flavorubredoxin; Provisional


Pssm-ID: 235475 [Multi-domain]  Cd Length: 479  Bit Score: 52.84  E-value: 4.93e-10
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2045851279  15 WRCNPCRWYYYPDKGDPTQNIPPGTLFEDLPSTWRCPIC 53
Cdd:PRK05452  426 MQCSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPEC 464
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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