|
Name |
Accession |
Description |
Interval |
E-value |
| COG2984 |
COG2984 |
ABC-type uncharacterized transport system, periplasmic component [General function prediction ... |
27-311 |
5.97e-103 |
|
ABC-type uncharacterized transport system, periplasmic component [General function prediction only];
Pssm-ID: 442223 Cd Length: 284 Bit Score: 303.37 E-value: 5.97e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 27 AQPLIGISKIVSHPALDAVEKGIQDELSAL--KINARYDLQNANGDANTAASIANKFQSEKVNLAVGIATPTAQALVNTL 104
Cdd:COG2984 1 KPKKIGILQISEHPALDAAREGFKDGLAEAgyGKNLKLDYQNAQGDQATAAQIAAKLVADKPDLIVAIGTPAAQAAANAT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 105 KTTPVVYSAVTDPVKAGLVKSLTQGDKMVTGVSDMTPVKQQIELLLK-MKKVKRLGHIYTSSEENAVVLAGVVKQVCKTM 183
Cdd:COG2984 81 KDIPVVFTAVTDPVGAGLVKSLEKPGGNVTGVSDLLPIEKQLELIKKlLPDAKRIGVLYNPSEANSVAQVEELKKAAKKL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 184 GIEFVETTVSKSAEVKQAVQSIIRRVDALYISTDNTVVSAMSAVTDVAMKNKVPVMSADPSSAESHpVLAAWGFDYYKMG 263
Cdd:COG2984 161 GLELVEATVTSSNEIQQALQSLAGKVDAIYVPTDNTVVSALEAIAKVAARAKIPVFGGDDSSVKAG-ALAGYGIDYYELG 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2046106879 264 RATGKMVAEILKGKKPAQIPTRFMTKasdVDLLINLDVAKKLGLTVPK 311
Cdd:COG2984 240 RQAAEMALRILKGEKPADIPVETPKK---FELVINLKTAKALGITLPE 284
|
|
| PBP1_ABC_unchar_transporter |
cd06325 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems ... |
31-309 |
8.98e-101 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Pssm-ID: 380548 Cd Length: 282 Bit Score: 297.88 E-value: 8.98e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 31 IGISKIVSHPALDAVEKGIQDELSAL----KINARYDLQNANGDANTAASIANKFQSEKVNLAVGIATPTAQALVNTLKT 106
Cdd:cd06325 2 IGILQFGSHPALDAAREGFRDGLRELgyveGKNVEIEYRNAQGDPERLPQIAAELVALKPDVIVAIGTPAAQAAKAATKT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 107 TPVVYSAVTDPVKAGLVKSLTQGDKMVTGVSDMTPVKQQIELLLKMK-KVKRLGHIYTSSEENAVVLAGVVKQVCKTMGI 185
Cdd:cd06325 82 IPIVFAAVTDPVGAGLVASLARPGGNVTGVSDLEPVGKRLELLKELLpNAKRVGVLYNPGEPNSVAQLEELEAAAKKLGL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 186 EFVETTVSKSAEVKQAVQSIIRRV-DALYISTDNTVVSAMSAVTDVAMKNKVPVMSADPSSAESHpVLAAWGFDYYKMGR 264
Cdd:cd06325 162 ELVEVPVSSPADIEQAFASLAGKVaDALYVPTDNTVASARPRIAALALKARIPVIYSDREFVEAG-ALMSYGPDYYDLGR 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2046106879 265 ATGKMVAEILKGKKPAQIPTRFMTKasdVDLLINLDVAKKLGLTV 309
Cdd:cd06325 241 QAARYVDRILKGAKPADLPVEQPTK---FELVINLKTAKALGLTI 282
|
|
| ABC_SBP_TrpX |
NF041285 |
tryptophan ABC transporter substrate-binding protein; |
7-317 |
7.36e-94 |
|
tryptophan ABC transporter substrate-binding protein;
Pssm-ID: 469182 Cd Length: 322 Bit Score: 281.72 E-value: 7.36e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 7 LVIFLAVPLILVSSAFAADSAQPL----IGISKIVSHPALDAVEKGIQDELSA--------LKInaryDLQNANGDANTA 74
Cdd:NF041285 6 LVAFLGGAFFYESKSQQEKKKKTPkvvkVGILQLVSHPALDQIYKGIEDGLKEegyvngknVKI----DFQNAQGDQSNL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 75 ASIANKFQSEKVNLAVGIATPTAQALVNTLKTTPVVYSAVTDPVKAGLVKSLTQGDKMVTGVSDMTPVKQQIELLLK-MK 153
Cdd:NF041285 82 KTMSQQLVNENNDVLVGIATPAAQALANATKDIPIVMGAVTDPVGAGLVKNLKHPGGNITGVSDQAPVKQQLDLIKElLP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 154 KVKRLGHIYTSSEENAVVLAGVVKQVCKTMGIEFVETTVSKSAEVKQAVQSIIRRVDALYISTDNTVVSAMSAVTDVAMK 233
Cdd:NF041285 162 NAKTIGILYTSSEDNSTSQVKEFKKLAKKLGLTVKEYAIPSTNDINQTSQVMASKVDAIYVPTDNTIASAMSTVVKNANA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 234 NKVPVMSADPSSAESHPvLAAWGFDYYKMGRATGKMVAEILKGKKPAQIPTRFMTKAsdvDLLINLDVAKKLGLTVPKDI 313
Cdd:NF041285 242 AKIPVFPSVDTMVKDGG-LATVSVNQYQLGVETGKMAAKILKGKKPATTPVKVVDKG---EPVINLKQAKKLGITIPESL 317
|
....
gi 2046106879 314 VKTA 317
Cdd:NF041285 318 LKEA 321
|
|
| ABC_sub_bind |
pfam04392 |
ABC transporter substrate binding protein; This family contains many hypothetical proteins and ... |
31-321 |
8.15e-76 |
|
ABC transporter substrate binding protein; This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.
Pssm-ID: 427918 Cd Length: 293 Bit Score: 234.69 E-value: 8.15e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 31 IGISKIVSHPALDAVEKGIQDELSALKI----NARYDLQNANGDANTAASIANKFQSEKVNLAVGIATPTAQALVNTLKT 106
Cdd:pfam04392 2 VAVAVFVEHPSLDAIVGGIQEGLKDLGYedgkNLLYDYKNAQGDPEILAQIANQLKGKRPDLIVGIATPEAQALVSATKN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 107 TPVVYSAVTDPVKAGLVKSLTQGDKMVTGVSDMTPVKQQIELLLKM-KKVKRLGHIYTSSEENAVVLAGVVKQVCKTMGI 185
Cdd:pfam04392 82 IPIVFAAVTDPVGAGLTKSLERPGENVTGVSDAEPMEKQIELIKYMlPNVKKIGIVYSPSEANSVKAVEELKLYAKKFGL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 186 EFVETTVSKSAEVKQAVQSIIRRVDALYISTDNTVVSAMSAVTDVAMKNKVPVMSADPSSAESHpVLAAWGFDYYKMGRA 265
Cdd:pfam04392 162 KLVTAYVPDSNDVESAVSHMKEKVDAIYILTDNTIVSGFETLVHYANFAKIPVFASDTESVKRG-AIAAVGIDYKEIGVQ 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106879 266 TGKMVAEILKGKKPAQIPtrfMTKASDVDLLINLDVAKKLGLTVPKDIVKTANKVV 321
Cdd:pfam04392 241 TGHMAVKILKGIKPGDIP---FVVAKSPKLFINLKAAQELGITIPERLLVYADEVK 293
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COG2984 |
COG2984 |
ABC-type uncharacterized transport system, periplasmic component [General function prediction ... |
27-311 |
5.97e-103 |
|
ABC-type uncharacterized transport system, periplasmic component [General function prediction only];
Pssm-ID: 442223 Cd Length: 284 Bit Score: 303.37 E-value: 5.97e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 27 AQPLIGISKIVSHPALDAVEKGIQDELSAL--KINARYDLQNANGDANTAASIANKFQSEKVNLAVGIATPTAQALVNTL 104
Cdd:COG2984 1 KPKKIGILQISEHPALDAAREGFKDGLAEAgyGKNLKLDYQNAQGDQATAAQIAAKLVADKPDLIVAIGTPAAQAAANAT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 105 KTTPVVYSAVTDPVKAGLVKSLTQGDKMVTGVSDMTPVKQQIELLLK-MKKVKRLGHIYTSSEENAVVLAGVVKQVCKTM 183
Cdd:COG2984 81 KDIPVVFTAVTDPVGAGLVKSLEKPGGNVTGVSDLLPIEKQLELIKKlLPDAKRIGVLYNPSEANSVAQVEELKKAAKKL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 184 GIEFVETTVSKSAEVKQAVQSIIRRVDALYISTDNTVVSAMSAVTDVAMKNKVPVMSADPSSAESHpVLAAWGFDYYKMG 263
Cdd:COG2984 161 GLELVEATVTSSNEIQQALQSLAGKVDAIYVPTDNTVVSALEAIAKVAARAKIPVFGGDDSSVKAG-ALAGYGIDYYELG 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2046106879 264 RATGKMVAEILKGKKPAQIPTRFMTKasdVDLLINLDVAKKLGLTVPK 311
Cdd:COG2984 240 RQAAEMALRILKGEKPADIPVETPKK---FELVINLKTAKALGITLPE 284
|
|
| PBP1_ABC_unchar_transporter |
cd06325 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems ... |
31-309 |
8.98e-101 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Pssm-ID: 380548 Cd Length: 282 Bit Score: 297.88 E-value: 8.98e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 31 IGISKIVSHPALDAVEKGIQDELSAL----KINARYDLQNANGDANTAASIANKFQSEKVNLAVGIATPTAQALVNTLKT 106
Cdd:cd06325 2 IGILQFGSHPALDAAREGFRDGLRELgyveGKNVEIEYRNAQGDPERLPQIAAELVALKPDVIVAIGTPAAQAAKAATKT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 107 TPVVYSAVTDPVKAGLVKSLTQGDKMVTGVSDMTPVKQQIELLLKMK-KVKRLGHIYTSSEENAVVLAGVVKQVCKTMGI 185
Cdd:cd06325 82 IPIVFAAVTDPVGAGLVASLARPGGNVTGVSDLEPVGKRLELLKELLpNAKRVGVLYNPGEPNSVAQLEELEAAAKKLGL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 186 EFVETTVSKSAEVKQAVQSIIRRV-DALYISTDNTVVSAMSAVTDVAMKNKVPVMSADPSSAESHpVLAAWGFDYYKMGR 264
Cdd:cd06325 162 ELVEVPVSSPADIEQAFASLAGKVaDALYVPTDNTVASARPRIAALALKARIPVIYSDREFVEAG-ALMSYGPDYYDLGR 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2046106879 265 ATGKMVAEILKGKKPAQIPTRFMTKasdVDLLINLDVAKKLGLTV 309
Cdd:cd06325 241 QAARYVDRILKGAKPADLPVEQPTK---FELVINLKTAKALGLTI 282
|
|
| ABC_SBP_TrpX |
NF041285 |
tryptophan ABC transporter substrate-binding protein; |
7-317 |
7.36e-94 |
|
tryptophan ABC transporter substrate-binding protein;
Pssm-ID: 469182 Cd Length: 322 Bit Score: 281.72 E-value: 7.36e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 7 LVIFLAVPLILVSSAFAADSAQPL----IGISKIVSHPALDAVEKGIQDELSA--------LKInaryDLQNANGDANTA 74
Cdd:NF041285 6 LVAFLGGAFFYESKSQQEKKKKTPkvvkVGILQLVSHPALDQIYKGIEDGLKEegyvngknVKI----DFQNAQGDQSNL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 75 ASIANKFQSEKVNLAVGIATPTAQALVNTLKTTPVVYSAVTDPVKAGLVKSLTQGDKMVTGVSDMTPVKQQIELLLK-MK 153
Cdd:NF041285 82 KTMSQQLVNENNDVLVGIATPAAQALANATKDIPIVMGAVTDPVGAGLVKNLKHPGGNITGVSDQAPVKQQLDLIKElLP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 154 KVKRLGHIYTSSEENAVVLAGVVKQVCKTMGIEFVETTVSKSAEVKQAVQSIIRRVDALYISTDNTVVSAMSAVTDVAMK 233
Cdd:NF041285 162 NAKTIGILYTSSEDNSTSQVKEFKKLAKKLGLTVKEYAIPSTNDINQTSQVMASKVDAIYVPTDNTIASAMSTVVKNANA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 234 NKVPVMSADPSSAESHPvLAAWGFDYYKMGRATGKMVAEILKGKKPAQIPTRFMTKAsdvDLLINLDVAKKLGLTVPKDI 313
Cdd:NF041285 242 AKIPVFPSVDTMVKDGG-LATVSVNQYQLGVETGKMAAKILKGKKPATTPVKVVDKG---EPVINLKQAKKLGITIPESL 317
|
....
gi 2046106879 314 VKTA 317
Cdd:NF041285 318 LKEA 321
|
|
| ABC_sub_bind |
pfam04392 |
ABC transporter substrate binding protein; This family contains many hypothetical proteins and ... |
31-321 |
8.15e-76 |
|
ABC transporter substrate binding protein; This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.
Pssm-ID: 427918 Cd Length: 293 Bit Score: 234.69 E-value: 8.15e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 31 IGISKIVSHPALDAVEKGIQDELSALKI----NARYDLQNANGDANTAASIANKFQSEKVNLAVGIATPTAQALVNTLKT 106
Cdd:pfam04392 2 VAVAVFVEHPSLDAIVGGIQEGLKDLGYedgkNLLYDYKNAQGDPEILAQIANQLKGKRPDLIVGIATPEAQALVSATKN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 107 TPVVYSAVTDPVKAGLVKSLTQGDKMVTGVSDMTPVKQQIELLLKM-KKVKRLGHIYTSSEENAVVLAGVVKQVCKTMGI 185
Cdd:pfam04392 82 IPIVFAAVTDPVGAGLTKSLERPGENVTGVSDAEPMEKQIELIKYMlPNVKKIGIVYSPSEANSVKAVEELKLYAKKFGL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 186 EFVETTVSKSAEVKQAVQSIIRRVDALYISTDNTVVSAMSAVTDVAMKNKVPVMSADPSSAESHpVLAAWGFDYYKMGRA 265
Cdd:pfam04392 162 KLVTAYVPDSNDVESAVSHMKEKVDAIYILTDNTIVSGFETLVHYANFAKIPVFASDTESVKRG-AIAAVGIDYKEIGVQ 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106879 266 TGKMVAEILKGKKPAQIPtrfMTKASDVDLLINLDVAKKLGLTVPKDIVKTANKVV 321
Cdd:pfam04392 241 TGHMAVKILKGIKPGDIP---FVVAKSPKLFINLKAAQELGITIPERLLVYADEVK 293
|
|
| RbsB |
COG1879 |
ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH ... |
2-290 |
8.52e-10 |
|
ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain [Carbohydrate transport and metabolism];
Pssm-ID: 441483 [Multi-domain] Cd Length: 307 Bit Score: 58.78 E-value: 8.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 2 RTRLSLVIFLAVPLILVSSAF------AADSAQPLIGIS-KIVSHPALDAVEKGIQDELSALKINARYdlQNANGDANTA 74
Cdd:COG1879 1 KRLALLAAVLALALALAACGSaaaeaaAAAAKGKTIGFVvKTLGNPFFVAVRKGAEAAAKELGVELIV--VDAEGDAAKQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 75 ASIANKFQSEKVNlAVGIATPTAQALVNTLKT-----TPVVysAVTDPVKAGLVKSLTQGDKMVTGvsdmtpvKQQIELL 149
Cdd:COG1879 79 ISQIEDLIAQGVD-AIIVSPVDPDALAPALKKakaagIPVV--TVDSDVDGSDRVAYVGSDNYAAG-------RLAAEYL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 150 LK-MKKVKRLGHIYTSSEENAVVL--AGVVKQVCKTMGIEFVETTVSK--SAEVKQAVQSIIRR---VDALYISTDNTVV 221
Cdd:COG1879 149 AKaLGGKGKVAILTGSPGAPAANErtDGFKEALKEYPGIKVVAEQYADwdREKALEVMEDLLQAhpdIDGIFAANDGMAL 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106879 222 SAMSAVTDVAMKNKVPVMSADPSSA-----ESHPVLAAWGFDYYKMGRATGKMVAEILKGKKPAQ---IPTRFMTKA 290
Cdd:COG1879 229 GAAQALKAAGRKGDVKVVGFDGSPEalqaiKDGTIDATVAQDPYLQGYLAVDAALKLLKGKEVPKeilTPPVLVTKE 305
|
|
| Peripla_BP_4 |
pfam13407 |
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ... |
155-277 |
9.17e-07 |
|
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins. This domain recognizes fructose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 433182 [Multi-domain] Cd Length: 259 Bit Score: 49.23 E-value: 9.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 155 VKRLGHIYTSSEENAVvlagvvKQVCKTMGIEFVETTVSKS---AEVKQAVQSIIRRVDALYISTDNtvVSAMSAVTDVA 231
Cdd:pfam13407 5 PKSTGNPFFQAAEEGA------EEAAKELGGEVIVVGPAEAdaaEQVAQIEDAIAQGVDAIIVAPVD--PTALAPVLKKA 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2046106879 232 MKNKVPVMSADpSSAESHPVLAAWGFDYYKMGRATGKMVAEILKGK 277
Cdd:pfam13407 77 KDAGIPVVTFD-SDAPSSPRLAYVGFDNEAAGEAAGELLAEALGGK 121
|
|
| PBP1_ABC_xylose_binding-like |
cd19995 |
periplasmic xylose-like sugar-binding component of the ABC-type transport systems; Periplasmic ... |
48-279 |
1.34e-05 |
|
periplasmic xylose-like sugar-binding component of the ABC-type transport systems; Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Pssm-ID: 380650 [Multi-domain] Cd Length: 294 Bit Score: 46.13 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 48 GIQDELSALKINARYDLQNANGDANTAASIANKF--QSEKVNLAVGIATPTAQALVNtlkttpvvySAVTDPVKAGLVKS 125
Cdd:cd19995 21 GFEKAMKKLCPDCKVIYQNANGDASTQQQQAEAAitQGAKVLVVDPVDSNAAAGIVA---------KAAQAGVPVIAYDR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 126 LTQGDKMVTGVS-DMTPV-KQQIELLLKM-----KKVKRLGHIYTSSEENA--------------VVLAGVVKQVCKTMG 184
Cdd:cd19995 92 LILGGPADYYVSfDNVAVgEAQAQSLVDHlkaigKKGVNIVMINGSPTDNNaglfkkgahevldpLGDSGELKLVCEYDT 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 185 IEFVETTVSKSAEvkQAVQSIIRRVDALYISTDNTVVSAMSAVTDVAMKNKVPVMSADPSSAESHPVLAAWGF-----DY 259
Cdd:cd19995 172 PDWDPANAQTAME--QALTKLGNNIDGVLSANDGLAGGAIAALKAQGLAGKVPVTGQDATVAGLQRILAGDQYmtvykPI 249
|
250 260
....*....|....*....|
gi 2046106879 260 YKMGRATGKMVAEILKGKKP 279
Cdd:cd19995 250 KKEAAAAAKVAVALLKGETP 269
|
|
| PBP1_ABC_sugar_binding-like |
cd01536 |
periplasmic sugar-binding domain of active transport systems that are members of the type 1 ... |
176-277 |
1.44e-05 |
|
periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily; Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.
Pssm-ID: 380478 [Multi-domain] Cd Length: 268 Bit Score: 45.64 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 176 VKQVCKTMGIEFVETTVSKSAE--VKQAVQSIIRRVDALYISTDNTvvSAMSAVTDVAMKNKVPVMSADPSSAESHPVLA 253
Cdd:cd01536 21 AEAAAKELGVELVVLDAQGDVAkqISQIEDLIAQGVDAIIIAPVDS--EALVPAVKKANAAGIPVVAVDTDIDGGGDVVA 98
|
90 100
....*....|....*....|....
gi 2046106879 254 AWGFDYYKMGRATGKMVAEILKGK 277
Cdd:cd01536 99 FVGTDNYEAGKLAGEYLAEALGGK 122
|
|
| Peripla_BP_4 |
pfam13407 |
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ... |
33-278 |
9.41e-05 |
|
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins. This domain recognizes fructose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 433182 [Multi-domain] Cd Length: 259 Bit Score: 43.45 E-value: 9.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 33 ISKIVSHPALDAVEKGIQDELSALKINARYDLqNANGDANTAASIANKFQSEKVNlAVGIATPTAQALVNTLK------- 105
Cdd:pfam13407 4 VPKSTGNPFFQAAEEGAEEAAKELGGEVIVVG-PAEADAAEQVAQIEDAIAQGVD-AIIVAPVDPTALAPVLKkakdagi 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 106 ----------TTPVVYSAVTDPVKAG------LVKSLTQGDK--MVTGVSDMTPVKQQIElllKMKKVkrLGHIYTSsee 167
Cdd:pfam13407 82 pvvtfdsdapSSPRLAYVGFDNEAAGeaagelLAEALGGKGKvaILSGSPGDPNANERID---GFKKV--LKEKYPG--- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 168 navvlagvVKQVCKtmgiefVETTVSKSAEVKQAVQSIIRR----VDALYISTDNTVVSAMSAVTDVAMKNKVPVMSADP 243
Cdd:pfam13407 154 --------IKVVAE------VEGTNWDPEKAQQQMEALLTAypnpLDGIISPNDGMAGGAAQALEAAGLAGKVVVTGFDA 219
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2046106879 244 SSA-----ESHPVLAAWGFDYYKMGRATGKMVAEILKGKK 278
Cdd:pfam13407 220 TPEaleaiKDGTIDATVLQDPYGQGYAAVELAAALLKGKK 259
|
|
| PBP1_ABC_sugar_binding-like |
cd06319 |
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic ... |
176-281 |
1.31e-04 |
|
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems; Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Pssm-ID: 380542 [Multi-domain] Cd Length: 278 Bit Score: 43.12 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 176 VKQVCKTMGIEFVeTTVSKSAEVKQA--VQSIIRR-VDALYISTDNTvvSAMSAVTDVAMKNKVPVMSADpSSAESHPVL 252
Cdd:cd06319 21 VQAAAEELGYEFV-TYDQKNSANEQVtnANDLIAQgVDGIIISPTNS--SAAPTVLDLANEAKIPVVIAD-IGTGGGDYV 96
|
90 100
....*....|....*....|....*....
gi 2046106879 253 AAWGFDYYKMGRATGKMVAEILKGKKPAQ 281
Cdd:cd06319 97 SYIISDNYDGGYQAGEYLAEALKENGWGG 125
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
193-280 |
1.34e-03 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 39.95 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 193 SKSAEVKQAVQSIIRR--VDALyisTDNTVVSAMSAVTDVAMKNKVPVMS-ADPSSAESHPVLAAWGFDYYKMGRATGKM 269
Cdd:pfam13458 52 GDPDVAAAAARRLVDQdgVDAI---VGGVSSAVALAVAEVLAKKGVPVIGpAALTGEKCSPYVFSLGPTYSAQATALGRY 128
|
90
....*....|.
gi 2046106879 270 VAEILKGKKPA 280
Cdd:pfam13458 129 LAKELGGKKVA 139
|
|
| PBP1_sensor_kinase-like |
cd06308 |
periplasmic binding domain of two-component sensor kinase signaling systems; Periplasmic ... |
171-277 |
1.63e-03 |
|
periplasmic binding domain of two-component sensor kinase signaling systems; Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Pssm-ID: 380531 [Multi-domain] Cd Length: 268 Bit Score: 39.45 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106879 171 VLAGVVKQVCKTMGIEFVETtvskSAEVKQAVQS------IIRRVDALYISTdnTVVSAMSAVTDVAMKNKVPVMSADpS 244
Cdd:cd06308 17 MNEEIKAEAAKYPNVELIVT----DAQGDAAKQIadiedlIAQGVDLLIVSP--NEADALTPVVKKAYDAGIPVIVLD-R 89
|
90 100 110
....*....|....*....|....*....|...
gi 2046106879 245 SAESHPVLAAWGFDYYKMGRATGKMVAEILKGK 277
Cdd:cd06308 90 KVSGDDYTAFIGADNVEIGRQAGEYIAELLNGK 122
|
|
| |
