|
Name |
Accession |
Description |
Interval |
E-value |
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-263 |
3.11e-158 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 439.91 E-value: 3.11e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG1101 1 MLELKNLSKTFNPGTVNEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNPLLGTASNMSLEDNMMITYRKGFKW-LKRSLNHKMREFFRSELVQLRMGLEDRMKENLALFSGGQRQALTLL 159
Cdd:COG1101 81 YIGRVFQDPMMGTAPSMTIEENLALAYRRGKRRgLRRGLTKKRRELFRELLATLGLGLENRLDTKVGLLSGGQRQALSLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 160 MMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEEKKALT 239
Cdd:COG1101 161 MATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIILDVSGEEKKKLT 240
|
250 260
....*....|....*....|....
gi 2046106881 240 VEKLIDKFHQIRHKSFENDRTLLS 263
Cdd:COG1101 241 VEDLLELFEEIRGEELADDRLLLG 264
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-226 |
1.95e-46 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 154.57 E-value: 1.95e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGtVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:cd03255 1 IELKNLSKTYGGG-GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 ----IGRIFQNPLLgtASNMSLEDN----MMITYRKGFKWLKRSLnhkmreffrsELVQlRMGLEDRMKENLALFSGGQR 153
Cdd:cd03255 80 rrrhIGFVFQSFNL--LPDLTALENvelpLLLAGVPKKERRERAE----------ELLE-RVGLGDRLNHYPSELSGGQQ 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 154 QALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAiEYGNRLLMMDKGEI 226
Cdd:cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-227 |
2.87e-46 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 154.43 E-value: 2.87e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG1136 4 LLELRNLTKSYGTGE-GEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 Y----IGRIFQNP-LLgtaSNMSLEDNMMITYRkgfkwLKRSLNHKMREFFRsELVQlRMGLEDRMKENLALFSGGQRQ- 154
Cdd:COG1136 83 LrrrhIGFVFQFFnLL---PELTALENVALPLL-----LAGVSRKERRERAR-ELLE-RVGLGDRLDHRPSQLSGGQQQr 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 155 -----ALtllmmvLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAiEYGNRLLMMDKGEII 227
Cdd:COG1136 153 vaiarAL------VNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELA-ARADRVIRLRDGRIV 223
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
2-234 |
9.59e-46 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 153.36 E-value: 9.59e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNqGTVnenqAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:cd03219 1 LEVRGLTKRFG-GLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 -IGRIFQNPllGTASNMSLEDNMMI--TYRKGFKWLKRSLNHKMREFFRSELVQL-RMGLEDRMKENLALFSGGQRQALT 157
Cdd:cd03219 76 gIGRTFQIP--RLFPELTVLENVMVaaQARTGSGLLLARARREEREARERAEELLeRVGLADLADRPAGELSYGQQRRLE 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 158 LLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRE-LRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-243 |
6.66e-45 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 151.36 E-value: 6.66e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYK--- 77
Cdd:COG3638 2 MLELRNLSKRYPGGTP----ALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRAlrr 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 -RAQyIGRIFQNPLLgtASNMSLEDNMMiTYRKGFKWLKRSLNHkmreFFRSELVQL------RMGLEDRMK---ENLal 147
Cdd:COG3638 78 lRRR-IGMIFQQFNL--VPRLSVLTNVL-AGRLGRTSTWRSLLG----LFPPEDRERalealeRVGLADKAYqraDQL-- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 148 fSGGQRQ------ALtllmmvLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMM 221
Cdd:COG3638 148 -SGGQQQrvaiarAL------VQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGL 220
|
250 260
....*....|....*....|..
gi 2046106881 222 DKGEIIFEAAGEEkkaLTVEKL 243
Cdd:COG3638 221 RDGRVVFDGPPAE---LTDAVL 239
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
3-225 |
1.20e-44 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 149.54 E-value: 1.20e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 3 ELKNVSMIFNQGtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYI 82
Cdd:cd03225 1 ELKNLSFSYPDG---ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 83 GRIFQNP---LLGTasnmSLEDNMMItyrkGFKWLKRSlNHKMREffRSELVQLRMGLEDRMKENLALFSGGQRQALTLL 159
Cdd:cd03225 78 GLVFQNPddqFFGP----TVEEEVAF----GLENLGLP-EEEIEE--RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 160 MMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGE 225
Cdd:cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGK-TIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-234 |
4.82e-44 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 148.63 E-value: 4.82e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTvnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:COG1122 1 IELENLSFSYPGGT----PALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPllgtasnmsleDNMMI--TYRK----GFKwlkrslNHKMREFFRSELVQ--LRM-GLEDRMKENLALFSGGQ 152
Cdd:COG1122 77 VGLVFQNP-----------DDQLFapTVEEdvafGPE------NLGLPREEIRERVEeaLELvGLEHLADRPPHELSGGQ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 153 RQALTL---LMMvlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFE 229
Cdd:COG1122 140 KQRVAIagvLAM---EPEVLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVAD 215
|
....*
gi 2046106881 230 AAGEE 234
Cdd:COG1122 216 GTPRE 220
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-243 |
1.11e-42 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 145.96 E-value: 1.11e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDD-----VSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELAR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNPllGTASNMSLEDNMM---ITYRKGFKWLKRSLNHKMREFFrsELVQLRmGLEDRMKENLalfSGGQRQaLT 157
Cdd:COG1120 76 RIAYVPQEP--PAPFGLTVRELVAlgrYPHLGLFGRPSAEDREAVEEAL--ERTGLE-HLADRPVDEL---SGGERQ-RV 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 158 LLMMVLSR-PDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIfeAAGEEKK 236
Cdd:COG1120 147 LIARALAQePPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIV--AQGPPEE 224
|
....*..
gi 2046106881 237 ALTVEKL 243
Cdd:COG1120 225 VLTPELL 231
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-234 |
1.68e-42 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 145.57 E-value: 1.68e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFnqGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG0411 4 LLEVRGLTKRF--GGL---VAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIAR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 Y-IGRIFQNPLLgtASNMSLEDNMMI--TYRKGFKWLKRSLNHKMREFFRSELVQL------RMGLEDRMKENLALFSGG 151
Cdd:COG0411 79 LgIARTFQNPRL--FPELTVLENVLVaaHARLGRGLLAALLRLPRARREEREARERaeelleRVGLADRADEPAGNLSYG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 152 QRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAA 231
Cdd:COG0411 157 QQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGT 236
|
...
gi 2046106881 232 GEE 234
Cdd:COG0411 237 PAE 239
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-226 |
1.51e-41 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 141.49 E-value: 1.51e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRAQ 80
Cdd:COG4619 1 LELEGLSFRVGGKPILSP-----VSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAmPPPEWRRQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPLLGTasnMSLEDNmmityrkgfkwLKRSLNHKMREFFRSELVQL--RMGLEDRMKE-NLALFSGGQRQALT 157
Cdd:COG4619 76 -VAYVPQEPALWG---GTVRDN-----------LPFPFQLRERKFDRERALELleRLGLPPDILDkPVERLSGGERQRLA 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 158 LLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:COG4619 141 LIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
3-224 |
2.22e-41 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 141.13 E-value: 2.22e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 3 ELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEykraqYI 82
Cdd:cd03235 1 EVEDLTVSYGGHPV-----LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERK-----RI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 83 GRIFQNPLLGTASNMSLEDNMMITyRKGFKWLKRSLNHKMREFFRSELVqlRMGLEDRMKENLALFSGGQRQALTLLMMV 162
Cdd:cd03235 71 GYVPQRRSIDRDFPISVRDVVLMG-LYGHKGLFRRLSKADKAKVDEALE--RVGLSELADRQIGELSGGQQQRVLLARAL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2046106881 163 LSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKLTAMMITHNMSHAIEYGNRLLMMDKG 224
Cdd:cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-234 |
5.55e-41 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 147.36 E-value: 5.55e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG1123 260 LLEVRNLSKRYPVRGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 Y---IGRIFQNPllgTAS---NMSLEDNMMITYRKGFKWLKRSLNHKMREFFrsELVQLRMGLEDRmkeNLALFSGGQRQ 154
Cdd:COG1123 340 LrrrVQMVFQDP---YSSlnpRMTVGDIIAEPLRLHGLLSRAERRERVAELL--ERVGLPPDLADR---YPHELSGGQRQ 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:COG1123 412 RVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEE 491
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-265 |
3.60e-40 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 139.89 E-value: 3.60e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:TIGR04521 1 IKLKNVSYIYQPGTPFEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 ---IGRIFQNP---LLGTA---------SNMSLEDNMmiTYRKGFKWLkrslnhkmreffrsELVqlrmGLEDRMKE--- 143
Cdd:TIGR04521 81 rkkVGLVFQFPehqLFEETvykdiafgpKNLGLSEEE--AEERVKEAL--------------ELV----GLDEEYLErsp 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 144 -NLalfSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMD 222
Cdd:TIGR04521 141 fEL---SGGQMRRVAIAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMH 217
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2046106881 223 KGEIIFEAAGEE---------KKALTVEKLIDKFHQIRHKSFENDRTLLSEE 265
Cdd:TIGR04521 218 KGKIVLDGTPREvfsdvdeleKIGLDVPEITELARKLKEKGLPVPKDPLTVE 269
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-241 |
4.90e-40 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 138.66 E-value: 4.90e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDP-EYKRAq 80
Cdd:COG1131 1 IEVRGLTKRYGDKTALDG-----VSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPaEVRRR- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPLLgtASNMSLEDNmmITYRKGFKWLKRSLNHKMREffrsELVQlRMGLEDRMKENLALFSGGQRQALTLLM 160
Cdd:COG1131 75 -IGYVPQEPAL--YPDLTVREN--LRFFARLYGLPRKEARERID----ELLE-LFGLTDAADRKVGTLSGGMKQRLGLAL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 161 MVLSRPDLILLDEHTAALDPKNAAIVLELtnkfIQEYK---LTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEEKKA 237
Cdd:COG1131 145 ALLHDPELLILDEPTSGLDPEARRELWEL----LRELAaegKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA 220
|
....
gi 2046106881 238 LTVE 241
Cdd:COG1131 221 RLLE 224
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-243 |
6.25e-40 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 138.47 E-value: 6.25e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTvnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYK---- 77
Cdd:cd03256 1 IEVENLSKTYPNGK----KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAlrql 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAQyIGRIFQ------------NPLLGTASNMSlednmmiTYRKGFKWLKRslNHKMREFfrsELVQlRMGLEDRMKENL 145
Cdd:cd03256 77 RRQ-IGMIFQqfnlierlsvleNVLSGRLGRRS-------TWRSLFGLFPK--EEKQRAL---AALE-RVGLLDKAYQRA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 146 ALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGE 225
Cdd:cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
250
....*....|....*...
gi 2046106881 226 IIFEAAGEEkkaLTVEKL 243
Cdd:cd03256 223 IVFDGPPAE---LTDEVL 237
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-263 |
1.53e-39 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 143.51 E-value: 1.53e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTV---GSIHLNDRNITRDPEYK 77
Cdd:COG1123 4 LLEVRDLSVRYPGGDV---PAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSEAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAQYIGRIFQNPLlgTASNM-SLEDNMMITYRKGfkWLKRSlnhKMREffRSELVQLRMGLEDRMKENLALFSGGQRQAL 156
Cdd:COG1123 81 RGRRIGMVFQDPM--TQLNPvTVGDQIAEALENL--GLSRA---EARA--RVLELLEAVGLERRLDRYPHQLSGGQRQRV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE-- 234
Cdd:COG1123 152 AIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEil 231
|
250 260 270
....*....|....*....|....*....|.
gi 2046106881 235 --KKALTVEKLIDKFHQIRHKSFENDRTLLS 263
Cdd:COG1123 232 aaPQALAAVPRLGAARGRAAPAAAAAEPLLE 262
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-227 |
2.76e-38 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 133.41 E-value: 2.76e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAqy 81
Cdd:cd03259 1 LELKGLSKTYG-----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLGTasNMSLEDNMMITYRKGfKWLKRSLNHKMREffRSELVQLRmGLEDRMKENLalfSGGQRQALTLLMM 161
Cdd:cd03259 74 IGMVFQDYALFP--HLTVAENIAFGLKLR-GVPKAEIRARVRE--LLELVGLE-GLLNRYPHEL---SGGQQQRVALARA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 162 VLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-227 |
3.85e-38 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 131.79 E-value: 3.85e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 3 ELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYI 82
Cdd:cd03214 1 EVENLSVGYGGRTV-----LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 83 GRIFQNpllgtasnmslednmmityrkgfkwlkrslnhkmreffrSELVQLRmGLEDRMKENLalfSGGQRQALTLLMMV 162
Cdd:cd03214 76 AYVPQA---------------------------------------LELLGLA-HLADRPFNEL---SGGERQRVLLARAL 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 163 LSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-226 |
1.08e-37 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 130.60 E-value: 1.08e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRaQY 81
Cdd:cd03230 1 IEVRNLSKRYGKKTALDD-----ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVK-RR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLGtaSNMSLEDNMMityrkgfkwlkrslnhkmreffrselvqlrmgledrmkenlalFSGGQRQALTLLMM 161
Cdd:cd03230 75 IGYLPEEPSLY--ENLTVRENLK-------------------------------------------LSGGMKQRLALAQA 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 162 VLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:cd03230 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGK-TILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-243 |
1.96e-37 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 132.14 E-value: 1.96e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPeykraQ 80
Cdd:COG1121 6 AIELENLTVSYG-----GRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRAR-----R 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNPLLGTASNMSLED--NMMITYRKG-FKWLKRSLNHKMREFFRselvqlRMGLEDRMKENLALFSGGQRQ--- 154
Cdd:COG1121 76 RIGYVPQRAEVDWDFPITVRDvvLMGRYGRRGlFRRPSRADREAVDEALE------RVGLEDLADRPIGELSGGQQQrvl 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ---ALtllmmvLSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIifeAA 231
Cdd:COG1121 150 larAL------AQDPDLLLLDEPFAGVDAATEEALYELLRE-LRREGKTILVVTHDLGAVREYFDRVLLLNRGLV---AH 219
|
250
....*....|..
gi 2046106881 232 GEEKKALTVEKL 243
Cdd:COG1121 220 GPPEEVLTPENL 231
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-225 |
2.35e-37 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 129.43 E-value: 2.35e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSmiFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:cd03228 1 IEFKNVS--FSYPG-RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLgtaSNMSLEDNmmityrkgfkwlkrslnhkmreffrselvqlrmgledrmkenlaLFSGGQRQALTLLMM 161
Cdd:cd03228 78 IAYVPQDPFL---FSGTIREN--------------------------------------------ILSGGQRQRIAIARA 110
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2046106881 162 VLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEykLTAMMITHNMShAIEYGNRLLMMDKGE 225
Cdd:cd03228 111 LLRDPPILILDEATSALDPETEALILEALRALAKG--KTVIVIAHRLS-TIRDADRIIVLDDGR 171
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
1-243 |
1.56e-36 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 129.73 E-value: 1.56e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYK--- 77
Cdd:TIGR02315 1 MLEVENLSKVYPNGK----QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKlrk 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 -RAQyIGRIFQNplLGTASNMSLEDNMMI-------TYRKGFKWLKRSlnHKMREFFRSElvqlRMGLEDRMKENLALFS 149
Cdd:TIGR02315 77 lRRR-IGMIFQH--YNLIERLTVLENVLHgrlgykpTWRSLLGRFSEE--DKERALSALE----RVGLADKAYQRADQLS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 150 GGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFE 229
Cdd:TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227
|
250
....*....|....
gi 2046106881 230 AAGEEKKALTVEKL 243
Cdd:TIGR02315 228 GAPSELDDEVLRHI 241
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-234 |
2.38e-36 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 129.86 E-value: 2.38e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNiTRDPEYKRA-- 79
Cdd:TIGR04520 1 IEVENVSFSYPES---EKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLD-TLDEENLWEir 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 QYIGRIFQNP---LLGTasnmSLED-------NMMITYrkgfkwlkrslnHKMREffRSELVQLRMGLEDRMKENLALFS 149
Cdd:TIGR04520 77 KKVGMVFQNPdnqFVGA----TVEDdvafgleNLGVPR------------EEMRK--RVDEALKLVGMEDFRDREPHLLS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 150 GGQRQ----ALTLLMmvlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEyGNRLLMMDKGE 225
Cdd:TIGR04520 139 GGQKQrvaiAGVLAM----RPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVL-ADRVIVMNKGK 213
|
....*....
gi 2046106881 226 IIFEAAGEE 234
Cdd:TIGR04520 214 IVAEGTPRE 222
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-227 |
6.26e-36 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 128.67 E-value: 6.26e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEykra 79
Cdd:COG1116 7 ALELRGVSKRFPTGG-GGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGpGPD---- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 qyIGRIFQNPLLgtasnM---SLEDNMMItyrkGFK---WLKRSLNHKMREFFrsELVQLRmGLEDRMKENLalfSGGQR 153
Cdd:COG1116 82 --RGVVFQEPAL-----LpwlTVLDNVAL----GLElrgVPKAERRERARELL--ELVGLA-GFEDAYPHQL---SGGMR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 154 Q--AL--TLLMmvlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDK--GEII 227
Cdd:COG1116 145 QrvAIarALAN----DPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSArpGRIV 220
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-227 |
7.28e-36 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 130.60 E-value: 7.28e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRaq 80
Cdd:COG3842 5 ALELENVSKRYG-----DVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEKR-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQN----PllgtasNMSLEDNmmITY---RKGFKwlKRSLNHKMREFFrsELVQLRmGLEDRMKENLalfSGGQR 153
Cdd:COG3842 78 NVGMVFQDyalfP------HLTVAEN--VAFglrMRGVP--KAEIRARVAELL--ELVGLE-GLADRYPHQL---SGGQQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 154 Q------ALtllmmVLsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:COG3842 142 QrvalarAL-----AP-EPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIE 215
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-227 |
7.84e-36 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 127.24 E-value: 7.84e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNIT---RDPEYK 77
Cdd:cd03257 1 LLEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLklsRRLRKI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAQYIGRIFQNPLlgTASN--MSLEDNMMITYRKgfkwlkrslnHKM---REFFRSELVQLRMGL---EDRMKENLALFS 149
Cdd:cd03257 80 RRKEIQMVFQDPM--SSLNprMTIGEQIAEPLRI----------HGKlskKEARKEAVLLLLVGVglpEEVLNRYPHELS 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 150 GGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03257 148 GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-227 |
1.44e-35 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 126.93 E-value: 1.44e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFnQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEY---K 77
Cdd:cd03258 1 MIELKNVSKVF-GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKelrK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAQYIGRIFQN-PLLgtaSNMSLEDNMMITYRKGfKWLKRSLNHKMREFFrsELVqlrmGLEDRMKENLALFSGGQRQAL 156
Cdd:cd03258 80 ARRRIGMIFQHfNLL---SSRTVFENVALPLEIA-GVPKAEIEERVLELL--ELV----GLEDKADAYPAQLSGGQKQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-234 |
1.56e-35 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 126.32 E-value: 1.56e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG2884 1 MIRFENVSKRYPGG----REALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 Y---IGRIFQN-PLLgtaSNMSLEDN----MMITYRKgfkwlKRSLNHKMREFFrsELVqlrmGLEDRMKENLALFSGGQ 152
Cdd:COG2884 77 LrrrIGVVFQDfRLL---PDRTVYENvalpLRVTGKS-----RKEIRRRVREVL--DLV----GLSDKAKALPHELSGGE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 153 RQ------AltllmmVLSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:COG2884 143 QQrvaiarA------LVNRPELLLADEPTGNLDPETSWEIMELLEE-INRRGTTVLIATHDLELVDRMPKRVLELEDGRL 215
|
....*...
gi 2046106881 227 IFEAAGEE 234
Cdd:COG2884 216 VRDEARGV 223
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-229 |
2.71e-35 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 126.25 E-value: 2.71e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG1127 5 MIEVRNLTKSFGDRVVLDG-----VSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRI---FQNP-LLgtaSNMSLEDNMMITYRKGFKWLKRSLNHKMREffRSELVQLRmGLEDRMKENLalfSGGQRQ-- 154
Cdd:COG1127 80 LRRRIgmlFQGGaLF---DSLTVFENVAFPLREHTDLSEAEIRELVLE--KLELVGLP-GAADKMPSEL---SGGMRKrv 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 155 ----ALTLlmmvlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFE 229
Cdd:COG1127 151 alarALAL------DPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAE 223
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-225 |
2.89e-35 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 123.89 E-value: 2.89e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 3 ELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYI 82
Cdd:cd00267 1 EIENLSFRYGGRTALDN-----VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 83 GRIFQnpllgtasnmslednmmityrkgfkwlkrslnhkmreffrselvqlrmgledrmkenlalFSGGQRQALTLLMMV 162
Cdd:cd00267 76 GYVPQ------------------------------------------------------------LSGGQRQRVALARAL 95
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 163 LSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGE 225
Cdd:cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-225 |
8.41e-35 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 123.07 E-value: 8.41e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRA-- 79
Cdd:cd03229 1 LELKNVSKRYGQ-----KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPlr 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 QYIGRIFQNPLLgtASNMSLEDNmmityrkgfkwlkrslnhkmreffrselvqLRMGLedrmkenlalfSGGQRQALTLL 159
Cdd:cd03229 76 RRIGMVFQDFAL--FPHLTVLEN------------------------------IALGL-----------SGGQQQRVALA 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 160 MMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGE 225
Cdd:cd03229 113 RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-221 |
1.96e-34 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 123.35 E-value: 1.96e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFnQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEykraq 80
Cdd:cd03293 1 LEVRNVSKTY-GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGpGPD----- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPLLgtasnM---SLEDNMMItyrkGFK---WLKRSLNHKMREFFrsELVQLRmGLEDRMKENLalfSGGQRQ 154
Cdd:cd03293 75 -RGYVFQQDAL-----LpwlTVLDNVAL----GLElqgVPKAEARERAEELL--ELVGLS-GFENAYPHQL---SGGMRQ 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMM 221
Cdd:cd03293 139 RVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
18-234 |
2.23e-34 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 123.31 E-value: 2.23e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 18 ENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY-IG------RIFqnpl 90
Cdd:cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAgIGyvpegrRIF---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 91 lgtaSNMSLEDN-MMITYRKGFKWLKRSLNHKMREFFRselvqlrmgLEDRMKENLALFSGGQRQALTLLMMVLSRPDLI 169
Cdd:cd03224 88 ----PELTVEENlLLGAYARRRAKRKARLERVYELFPR---------LKERRKQLAGTLSGGEQQMLAIARALMSRPKLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 170 LLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-246 |
4.33e-34 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 123.43 E-value: 4.33e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQgtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG4555 1 MIEVENLSKKYGK-----VPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPllGTASNMSLEDNmmITYrkgFKWLkRSLNHKMREFFRSELVQlRMGLEDRMKENLALFSGGQRQALTLLM 160
Cdd:COG4555 76 -IGVLPDER--GLYDRLTVREN--IRY---FAEL-YGLFDEELKKRIEELIE-LLGLEEFLDRRVGELSTGMKKKVALAR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 161 MVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEEKKALTV 240
Cdd:COG4555 146 ALVHDPKVLLLDEPTNGLDVMARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIG 224
|
....*.
gi 2046106881 241 EKLIDK 246
Cdd:COG4555 225 EENLED 230
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-234 |
5.24e-34 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 122.56 E-value: 5.24e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNenqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAq 80
Cdd:COG3840 1 MLRLDDLTYRYGDFPLR-------FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAERP- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQ-NPLLgtaSNMSLEDNMMITYRKGFKwlkrsLNhkmrEFFRSELVQL--RMGLE---DRMKENLalfSGGQRQ 154
Cdd:COG3840 73 -VSMLFQeNNLF---PHLTVAQNIGLGLRPGLK-----LT----AEQRAQVEQAleRVGLAgllDRLPGQL---SGGQRQ 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:COG3840 137 RVALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAA 216
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-227 |
9.71e-34 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 122.60 E-value: 9.71e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNIT--RDPEYKR 78
Cdd:COG1124 1 MLEVRNLSVSYGQGG-RRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTrrRRKAFRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 79 AqyIGRIFQNPLLgtasnmslednmmityrkgfkwlkrSLN--HKMREFFRSELVQLRMG-LEDRMKENLAL-------- 147
Cdd:COG1124 80 R--VQMVFQDPYA-------------------------SLHprHTVDRILAEPLRIHGLPdREERIAELLEQvglppsfl 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 148 ------FSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMShAIEY-GNRLLM 220
Cdd:COG1124 133 dryphqLSGGQRQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLA-VVAHlCDRVAV 211
|
....*..
gi 2046106881 221 MDKGEII 227
Cdd:COG1124 212 MQNGRIV 218
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-227 |
1.79e-33 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 121.13 E-value: 1.79e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTI-----TPTVGSIHLNDRNI---TRD 73
Cdd:cd03260 1 IELRDLNVYYG-----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKDIydlDVD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 74 PEYKRAQyIGRIFQNPllgTASNMSLEDNMMITYRKGFKWLKRSLNHKMREFFRselvqlRMGLEDRMKENLALF--SGG 151
Cdd:cd03260 76 VLELRRR-VGMVFQKP---NPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALR------KAALWDEVKDRLHALglSGG 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 152 QRQALTL---LMMvlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03260 146 QQQRLCLaraLAN---EPEVLLLDEPTSALDPISTAKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLV 219
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-227 |
4.23e-33 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 127.26 E-value: 4.23e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRAQ 80
Cdd:COG2274 474 IELENVSFRYPG---DSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQiDPASLRRQ 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPLL--GTasnmsLEDNMMITYRK-GFKWLKRSLnhKM---REFFRselvQLRMGLEDRMKENLALFSGGQRQ 154
Cdd:COG2274 551 -IGVVLQDVFLfsGT-----IRENITLGDPDaTDEEIIEAA--RLaglHDFIE----ALPMGYDTVVGEGGSNLSGGQRQ 618
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQeyKLTAMMITHNMSHaIEYGNRLLMMDKGEII 227
Cdd:COG2274 619 RLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLST-IRLADRIIVLDKGRIV 688
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-234 |
1.17e-31 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 122.17 E-value: 1.17e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTvnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRAQ 80
Cdd:COG4988 337 IELEDVSFSYPGGR----PALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDlDPASWRRQ 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 --YIGrifQNPLL--GTasnmsLEDNMMItYRKGF------KWLKRSlnhKMREFFRselvQLRMGLEDRMKENLALFSG 150
Cdd:COG4988 413 iaWVP---QNPYLfaGT-----IRENLRL-GRPDAsdeeleAALEAA---GLDEFVA----ALPDGLDTPLGEGGRGLSG 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 151 GQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEykLTAMMITHNMsHAIEYGNRLLMMDKGEIIFEA 230
Cdd:COG4988 477 GQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKG--RTVILITHRL-ALLAQADRILVLDDGRIVEQG 553
|
....
gi 2046106881 231 AGEE 234
Cdd:COG4988 554 THEE 557
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-226 |
1.71e-31 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 115.70 E-value: 1.71e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPE--YKRA 79
Cdd:cd03262 1 IEIKNLHKSFG-----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKniNELR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 QYIGRIFQNPLLgtASNMSLEDNMMITYRKGFKWLKRSLNHKMREFFRselvqlRMGLEDRMKENLALFSGGQRQ----A 155
Cdd:cd03262 76 QKVGMVFQQFNL--FPHLTVLENITLAPIKVKGMSKAEAEERALELLE------KVGLADKADAYPAQLSGGQQQrvaiA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 156 LTLLMmvlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:cd03262 148 RALAM----NPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-234 |
2.23e-31 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 116.06 E-value: 2.23e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPE---YKR 78
Cdd:cd03261 1 IELRGLTKSFGGRTVLKG-----VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEaelYRL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 79 AQYIGRIFQNPLLGTAsnMSLEDNMMITYRKGFKWLKRSLNHKMREFFrsELVQLRmGLEDRMKENLalfSGGQRQALTL 158
Cdd:cd03261 76 RRRMGMLFQSGALFDS--LTVFENVAFPLREHTRLSEEEIREIVLEKL--EAVGLR-GAEDLYPAEL---SGGMKKRVAL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 159 LMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-226 |
3.64e-31 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 115.41 E-value: 3.64e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTvnenqAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAqy 81
Cdd:cd03300 1 IELENVSKFYGGFV-----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRP-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLgtASNMSLEDNMMITYR-KGFKwlKRSLNHKMREFFRseLVQLRmGLEDRMKENLalfSGGQRQALTLLM 160
Cdd:cd03300 74 VNTVFQNYAL--FPHLTVFENIAFGLRlKKLP--KAEIKERVAEALD--LVQLE-GYANRKPSQL---SGGQQQRVAIAR 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 161 MVLSRPDLILLDEHTAALDPK-NAAIVLELTNkFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:cd03300 144 ALVNEPKVLLLDEPLGALDLKlRKDMQLELKR-LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKI 209
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-234 |
5.32e-31 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 115.09 E-value: 5.32e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRA- 79
Cdd:COG1126 1 MIEIENLHKSFG-----DLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDINKl 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 -QYIGRIFQN----PllgtasNMSLEDNMMITYRKGFKWLKRSLNHKMREFFRselvqlRMGLEDRMKENLALFSGGQRQ 154
Cdd:COG1126 76 rRKVGMVFQQfnlfP------HLTVLENVTLAPIKVKKMSKAEAEERAMELLE------RVGLADKADAYPAQLSGGQQQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ----ALTLLMmvlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEA 230
Cdd:COG1126 144 rvaiARALAM----EPKVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEG 218
|
....
gi 2046106881 231 AGEE 234
Cdd:COG1126 219 PPEE 222
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-234 |
8.20e-31 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 115.50 E-value: 8.20e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:PRK13635 6 IRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNP---LLGTASN----MSLEDNMMityrkgfkwlKRSlnhKMREFFRSELVQLRMglEDRMKENLALFSGGQRQ 154
Cdd:PRK13635 83 VGMVFQNPdnqFVGATVQddvaFGLENIGV----------PRE---EMVERVDQALRQVGM--EDFLNREPHRLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEyGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK13635 148 RVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEE 226
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-227 |
1.30e-30 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 113.37 E-value: 1.30e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRaQY 81
Cdd:cd03263 1 LQIRNLTKTYKKGT---KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAAR-QS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQ-NPLLgtaSNMSLEDNMMITYR-KGFKWLKRSLNhkmreffrSELVQLRMGLEDRMKENLALFSGGQRQALTLL 159
Cdd:cd03263 77 LGYCPQfDALF---DELTVREHLRFYARlKGLPKSEIKEE--------VELLLRVLGLTDKANKRARTLSGGMKRKLSLA 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 160 MMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQeyKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03263 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLR 211
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-227 |
2.56e-30 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 115.56 E-value: 2.56e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG1135 1 MIELENLSKTFPTKG-GPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 Y---IGRIFQNP-LLgtaSNMSLEDN----MMITyrkgfKWLKRSLNHKMREFFrsELVqlrmGLEDRMK---ENLalfS 149
Cdd:COG1135 80 ArrkIGMIFQHFnLL---SSRTVAENvalpLEIA-----GVPKAEIRKRVAELL--ELV----GLSDKADaypSQL---S 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 150 GGQRQ------ALTllmmvlSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDK 223
Cdd:COG1135 143 GGQKQrvgiarALA------NNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLEN 216
|
....
gi 2046106881 224 GEII 227
Cdd:COG1135 217 GRIV 220
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-227 |
2.88e-30 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 115.67 E-value: 2.88e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR--DPEYKR 78
Cdd:PRK11153 1 MIELKNISKVFPQGG-RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTAlsEKELRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 79 A-QYIGRIFQ--NpLLgtaSNMSLEDNMMityrkgfkwLKRSLNHKMREFFR---SELVQLrMGLEDRMKENLALFSGGQ 152
Cdd:PRK11153 80 ArRQIGMIFQhfN-LL---SSRTVFDNVA---------LPLELAGTPKAEIKarvTELLEL-VGLSDKADRYPAQLSGGQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 153 RQ------ALTllmmvlSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:PRK11153 146 KQrvaiarALA------SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
.
gi 2046106881 227 I 227
Cdd:PRK11153 220 V 220
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
2-236 |
4.14e-30 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 112.46 E-value: 4.14e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQy 81
Cdd:cd03265 1 IEVENLVKKYGD-----FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLGTAsnMSLEDNMMITYR-KGFKWLKRslnhkmREffRSELVQLRMGLEDRMKENLALFSGGQRQALTLLM 160
Cdd:cd03265 75 IGIVFQDLSVDDE--LTGWENLYIHARlYGVPGAER------RE--RIDELLDFVGLLEAADRLVKTYSGGMRRRLEIAR 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 161 MVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEEKK 236
Cdd:cd03265 145 SLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-246 |
4.15e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 113.55 E-value: 4.15e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:PRK13632 7 MIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNP---LLGTasnmSLEDNmmITYRKGFKWLKRSlnhKMREFFRSelVQLRMGLEDRMKENLALFSGGQRQALT 157
Cdd:PRK13632 84 KIGIIFQNPdnqFIGA----TVEDD--IAFGLENKKVPPK---KMKDIIDD--LAKKVGMEDYLDKEPQNLSGGQKQRVA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 158 LLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEyGNRLLMMDKGEIIfeAAGEEKKA 237
Cdd:PRK13632 153 IASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLI--AQGKPKEI 229
|
....*....
gi 2046106881 238 LTVEKLIDK 246
Cdd:PRK13632 230 LNNKEILEK 238
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-227 |
8.24e-30 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 112.01 E-value: 8.24e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVnenqAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:cd03295 1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNplLGTASNMSLEDNMmITYRKGFKWLKRSLNHKMREFFrsELVQLR-MGLEDRMKENLalfSGGQRQALTLLM 160
Cdd:cd03295 77 IGYVIQQ--IGLFPHMTVEENI-ALVPKLLKWPKEKIRERADELL--ALVGLDpAEFADRYPHEL---SGGQQQRVGVAR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 161 MVLSRPDLILLDEHTAALDPknaaIV-LELTNKFI---QEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03295 149 ALAADPPLLLMDEPFGALDP----ITrDQLQEEFKrlqQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
2-229 |
1.15e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 112.95 E-value: 1.15e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNI---TRDPEYKR 78
Cdd:PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIthkTKDKYIRP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 79 A-QYIGRIFQNPllgtaSNMSLEDNMMITYRKGFKWLKRSLNHKMREFFRselVQLRMGLE-DRMKENLALFSGGQRQAL 156
Cdd:PRK13646 83 VrKRIGMVFQFP-----ESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHR---LLMDLGFSrDVMSQSPFQMSGGQMRKI 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFE 229
Cdd:PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-234 |
1.15e-29 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 111.61 E-value: 1.15e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVsmifNQGtVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG0410 3 MLEVENL----HAG-YGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 Y-IG------RIFqnpllgtaSNMSLEDNMMityrkgfkwlkrslnhkMREFFRSELVQLRMGLED------RMKE---N 144
Cdd:COG0410 78 LgIGyvpegrRIF--------PSLTVEENLL-----------------LGAYARRDRAEVRADLERvyelfpRLKErrrQ 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 145 LA-LFSGGQRQALTL---LMmvlSRPDLILLDEHTAALDPKnaaIVLELTN--KFIQEYKLTAMMITHNMSHAIEYGNRL 218
Cdd:COG0410 133 RAgTLSGGEQQMLAIgraLM---SRPKLLLLDEPSLGLAPL---IVEEIFEiiRRLNREGVTILLVEQNARFALEIADRA 206
|
250
....*....|....*.
gi 2046106881 219 LMMDKGEIIFEAAGEE 234
Cdd:COG0410 207 YVLERGRIVLEGTAAE 222
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
2-243 |
1.60e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 112.45 E-value: 1.60e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITrDPEYKRA-- 79
Cdd:PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDIT-DKKVKLSdi 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 -QYIGRIFQNP------------LLGTASNMSLEDNmMITYRkgfkwLKRSLNhkmreffrseLVQL-RMGLEDRMKENL 145
Cdd:PRK13637 82 rKKVGLVFQYPeyqlfeetiekdIAFGPINLGLSEE-EIENR-----VKRAMN----------IVGLdYEDYKDKSPFEL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 146 alfSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGE 225
Cdd:PRK13637 146 ---SGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGK 222
|
250 260
....*....|....*....|
gi 2046106881 226 IIFEAAGEE--KKALTVEKL 243
Cdd:PRK13637 223 CELQGTPREvfKEVETLESI 242
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
2-226 |
2.68e-29 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 109.80 E-value: 2.68e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVnenqAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNIT-----RDPEY 76
Cdd:cd03292 1 IEFINVTKTYPNGTA----ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSdlrgrAIPYL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 77 KRaqYIGRIFQNPLLgtASNMSLEDN----MMITYRKGFKWLKRSlnhkmreffrSELVQLrMGLEDRMKENLALFSGGQ 152
Cdd:cd03292 77 RR--KIGVVFQDFRL--LPDRNVYENvafaLEVTGVPPREIRKRV----------PAALEL-VGLSHKHRALPAELSGGE 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2046106881 153 RQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:cd03292 142 QQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-234 |
5.75e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 114.86 E-value: 5.75e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:COG4987 334 LELEDVSFRYPGA---GRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRR 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLgtaSNMSLEDNMMI-----TYRKgfkwLKRSLnhkmreffrsELVQL-------RMGLEDRMKENLALFS 149
Cdd:COG4987 411 IAVVPQRPHL---FDTTLRENLRLarpdaTDEE----LWAAL----------ERVGLgdwlaalPDGLDTWLGEGGRRLS 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 150 GGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLE-----LTNKfiqeyklTAMMITHNMShAIEYGNRLLMMDKG 224
Cdd:COG4987 474 GGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLAdlleaLAGR-------TVLLITHRLA-GLERMDRILVLEDG 545
|
250
....*....|
gi 2046106881 225 EIIFEAAGEE 234
Cdd:COG4987 546 RIVEQGTHEE 555
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
2-227 |
1.11e-28 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 108.45 E-value: 1.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRAQ 80
Cdd:cd03245 3 IEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPLL--GTasnmsLEDNmmITYRKGFKWLKRSLNHKMR----EFFRselvQLRMGLEDRMKENLALFSGGQRQ 154
Cdd:cd03245 80 -IGYVPQDVTLfyGT-----LRDN--ITLGAPLADDERILRAAELagvtDFVN----KHPNGLDLQIGERGRGLSGGQRQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMShAIEYGNRLLMMDKGEII 227
Cdd:cd03245 148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDK--TLIIITHRPS-LLDLVDRIIVMDSGRIV 217
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-206 |
1.80e-28 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 107.56 E-value: 1.80e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG4133 2 MLEAENLSCRRGERLLFSG-----LSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 --YIGrifqnPLLGTASNMSLEDNMmityrkgfKWLKRSLNHKMReffRSELVQL--RMGLEDRMKENLALFSGGQRQAL 156
Cdd:COG4133 77 laYLG-----HADGLKPELTVRENL--------RFWAALYGLRAD---REAIDEAleAVGLAGLADLPVRQLSAGQKRRV 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITH 206
Cdd:COG4133 141 ALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLAR-GGAVLLTTH 189
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
25-227 |
2.31e-28 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 108.19 E-value: 2.31e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAqyIGRIFQNPLLgtASNMSLEDNMM 104
Cdd:cd03299 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRD--ISYVPQNYAL--FPHMTVYKNIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 105 ITYRKgFKWLKRSLNHKMREFFRSelvqlrMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAA 184
Cdd:cd03299 94 YGLKK-RKVDKKEIERKVLEIAEM------LGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2046106881 185 IVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03299 167 KLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
25-176 |
2.33e-28 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 105.42 E-value: 2.33e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYIGRIFQNPLLGtaSNMSLEDNMM 104
Cdd:pfam00005 4 VSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLF--PRLTVRENLR 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2046106881 105 ItYRKGFKWLKRSLNHKMREFFrsELVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTA 176
Cdd:pfam00005 82 L-GLLLKGLSKREKDARAEEAL--EKLGLGDLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
24-227 |
8.44e-28 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 106.04 E-value: 8.44e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 24 TINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAqyIGRIFQ-NPLLgtaSNMSLEDN 102
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP--VSMLFQeNNLF---AHLTVEQN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 103 MMITYRKGFKwlkrsLNHKMREffRSELVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKN 182
Cdd:cd03298 91 VGLGLSPGLK-----LTAEDRQ--AIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2046106881 183 AAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03298 164 RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
31-228 |
1.10e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 105.84 E-value: 1.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 31 EGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDR-------NITRDPEYKRaqyIGRIFQNPLLGTasNMSLEDNm 103
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlfdsrkKINLPPQQRK---IGLVFQQYALFP--HLNVREN- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 104 mITYRkgfkwLKRSLNHKMREFFRsELVQLrMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNA 183
Cdd:cd03297 96 -LAFG-----LKRKRNREDRISVD-ELLDL-LGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALR 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2046106881 184 AIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIF 228
Cdd:cd03297 168 LQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-226 |
1.65e-27 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 108.24 E-value: 1.65e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAq 80
Cdd:COG3839 3 SLELENVSKSYG-----GVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKDRN- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQN----PllgtasNMSLEDNMmityrkGF-----KWLKRSLNHKMREFfrSELVQLRmGLEDRMKENLalfSGG 151
Cdd:COG3839 77 -IAMVFQSyalyP------HMTVYENI------AFplklrKVPKAEIDRRVREA--AELLGLE-DLLDRKPKQL---SGG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 152 QRQ------ALTLlmmvlsRPDLILLDEHTAALDPK-NAAIVLELTnKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKG 224
Cdd:COG3839 138 QRQrvalgrALVR------EPKVFLLDEPLSNLDAKlRVEMRAEIK-RLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDG 210
|
..
gi 2046106881 225 EI 226
Cdd:COG3839 211 RI 212
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-229 |
1.90e-27 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 105.43 E-value: 1.90e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFnqgtvnENQAIStINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAq 80
Cdd:PRK10771 1 MLKLTDITWLY------HHLPMR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQ-NPLLgtaSNMSLEDNMMITYRKGFKwlkrsLNHKMREffrsELVQL--RMGLEDRMKENLALFSGGQRQALT 157
Cdd:PRK10771 73 -VSMLFQeNNLF---SHLTVAQNIGLGLNPGLK-----LNAAQRE----KLHAIarQMGIEDLLARLPGQLSGGQRQRVA 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2046106881 158 LLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFE 229
Cdd:PRK10771 140 LARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWD 211
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-233 |
2.46e-27 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 107.93 E-value: 2.46e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDR--NITRDPeykRA 79
Cdd:COG1118 3 IEVRNISKRFGS-----FTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRdlFTNLPP---RE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 QYIGRIFQNPLLgtASNMSLEDNMMITYRKGfKWLKRSLNHKMREFFrsELVQLRmGLEDRMKENLalfSGGQRQALTLL 159
Cdd:COG1118 75 RRVGFVFQHYAL--FPHMTVAENIAFGLRVR-PPSKAEIRARVEELL--ELVQLE-GLADRYPSQL---SGGQRQRVALA 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 160 MMVLSRPDLILLDEHTAALDPK-NAAIVLELTnKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIifEAAGE 233
Cdd:COG1118 146 RALAVEPEVLLLDEPFGALDAKvRKELRRWLR-RLHDELGGTTVFVTHDQEEALELADRVVVMNQGRI--EQVGT 217
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-227 |
7.61e-27 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 105.91 E-value: 7.61e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIF--NQGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTV---GSIHLNDRNITRDPE 75
Cdd:COG0444 1 LLEVRNLKVYFptRRGVV---KAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPGitsGEILFDGEDLLKLSE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 76 YKRAQYIGR----IFQNPLlgTASN--MSLEDNMMITYRKGFKWLKRSLNHKMREFFrsELVQLRMGlEDRMK----Enl 145
Cdd:COG0444 78 KELRKIRGReiqmIFQDPM--TSLNpvMTVGDQIAEPLRIHGGLSKAEARERAIELL--ERVGLPDP-ERRLDryphE-- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 146 alFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGE 225
Cdd:COG0444 151 --LSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGR 228
|
..
gi 2046106881 226 II 227
Cdd:COG0444 229 IV 230
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-234 |
8.09e-27 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 103.84 E-value: 8.09e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:cd03254 3 IEFENVNFSYDEK----KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLL--GT-ASNMSLEDNmmitYRKGFKWLKRSLNHKMREFFRSelvqLRMGLEDRMKENLALFSGGQRQALTL 158
Cdd:cd03254 79 IGVVLQDTFLfsGTiMENIRLGRP----NATDEEVIEAAKEAGAHDFIMK----LPNGYDTVLGENGGNLSQGERQLLAI 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 159 LMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKlTAMMITHNMShAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:cd03254 151 ARAMLRDPKILILDEATSNIDTETEKLIQEALEK-LMKGR-TSIIIAHRLS-TIKNADKILVLDDGKIIEEGTHDE 223
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-227 |
1.47e-26 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 103.57 E-value: 1.47e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTvnenqAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAqy 81
Cdd:cd03296 3 IEVRNVSKRFGDFV-----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLgtASNMSLEDNMMItyrkGFKWLKRS-------LNHKMREFFrsELVQLRmGLEDRMKENLalfSGGQRQ 154
Cdd:cd03296 76 VGFVFQHYAL--FRHMTVFDNVAF----GLRVKPRSerppeaeIRAKVHELL--KLVQLD-WLADRYPAQL---SGGQRQ 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKnaaIVLELTN---KFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03296 144 RVALARALAVEPKVLLLDEPFGALDAK---VRKELRRwlrRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE 216
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-234 |
2.18e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 104.01 E-value: 2.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIF-NQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNiTRDPE--YK 77
Cdd:PRK13633 4 MIKCKNVSYKYeSNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD-TSDEEnlWD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAQYIGRIFQNPLLGTASNMSLED------NMMItyrkgfkwlkrsLNHKMREffRSELVQLRMGLEDRMKENLALFSGG 151
Cdd:PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDvafgpeNLGI------------PPEEIRE--RVDESLKKVGMYEYRRHAPHLLSGG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 152 QRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEyGNRLLMMDKGEIIFEAA 231
Cdd:PRK13633 149 QKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGT 227
|
...
gi 2046106881 232 GEE 234
Cdd:PRK13633 228 PKE 230
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-226 |
2.39e-26 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 102.33 E-value: 2.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTvnenqAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAqy 81
Cdd:cd03301 1 VELENVTKRFGNVT-----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRD-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLgtASNMSLEDNMMITYR-KGFKwlKRSLNHKMREFfrSELVQLRMGLEDRMKEnlalFSGGQRQALTLLM 160
Cdd:cd03301 74 IAMVFQNYAL--YPHMTVYDNIAFGLKlRKVP--KDEIDERVREV--AELLQIEHLLDRKPKQ----LSGGQRQRVALGR 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 161 MVLSRPDLILLDEHTAALDPK-NAAIVLELtNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:cd03301 144 AIVREPKVFLMDEPLSNLDAKlRVQMRAEL-KRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-218 |
2.46e-26 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 102.17 E-value: 2.46e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTV---GSIHLNDRNITRDPEYK 77
Cdd:COG4136 1 MLSLENLTITLGGRPL-----LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFsasGEVLLNGRRLTALPAEQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAqyIGRIFQNPLLgtASNMSLEDNMMITYRKGFKWLKRslnhkmREFFRSELVQLRM-GLEDRMKENLalfSGGQRQAL 156
Cdd:COG4136 76 RR--IGILFQDDLL--FPHLSVGENLAFALPPTIGRAQR------RARVEQALEEAGLaGFADRDPATL---SGGQRARV 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRL 218
Cdd:COG4136 143 ALLRALLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHDEEDAPAAGRVL 204
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
2-234 |
2.66e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 103.76 E-value: 2.66e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 I----GRIFQNPLLGTASNMSLEDNMMITYRKGF----------KWLKrslnhkmreffrselvqlRMGL-EDRMKENLA 146
Cdd:PRK13641 83 LrkkvSLVFQFPEAQLFENTVLKDVEFGPKNFGFsedeakekalKWLK------------------KVGLsEDLISKSPF 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 147 LFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFiQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY-QKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
....*...
gi 2046106881 227 IFEAAGEE 234
Cdd:PRK13641 224 IKHASPKE 231
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-227 |
9.52e-26 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 100.43 E-value: 9.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKraqy 81
Cdd:cd03269 1 LEVENVTKRFG-----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPllGTASNMSLEDNMM-ITYRKGFKwlKRSLNHKMREFFRselvqlRMGLEDRMKENLALFSGGQRQALTLLM 160
Cdd:cd03269 72 IGYLPEER--GLYPKMKVIDQLVyLAQLKGLK--KEEARRRIDEWLE------RLELSEYANKRVEELSKGNQQKVQFIA 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 161 MVLSRPDLILLDEHTAALDPKNAAIVLELtnkfIQEYK---LTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03269 142 AVIHDPELLILDEPFSGLDPVNVELLKDV----IRELAragKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-227 |
9.70e-26 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 105.63 E-value: 9.70e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSmiFnqGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITrdpEYKRAQY 81
Cdd:COG1132 340 IEFENVS--F--SYPGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIR---DLTLESL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 ---IGRIFQNPLLgtaSNMSLEDNmmITY-RKGF------KWLKRSLNHkmrEFFRSelvqLRMGLEDRMKENLALFSGG 151
Cdd:COG1132 413 rrqIGVVPQDTFL---FSGTIREN--IRYgRPDAtdeeveEAAKAAQAH---EFIEA----LPDGYDTVVGERGVNLSGG 480
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 152 QRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMShAIEYGNRLLMMDKGEII 227
Cdd:COG1132 481 QRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGR--TTIVIAHRLS-TIRNADRILVLDDGRIV 553
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-227 |
2.03e-25 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 98.27 E-value: 2.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNIT-RDPEYKRAQ 80
Cdd:cd03216 1 LELRGITKRFGGVKALDG-----VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSfASPRDARRA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQnpllgtasnmslednmmityrkgfkwlkrslnhkmreffrselvqlrmgledrmkenlalFSGGQRQALTLLM 160
Cdd:cd03216 76 GIAMVYQ------------------------------------------------------------LSVGERQMVEIAR 95
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 161 MVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-229 |
2.72e-25 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 99.19 E-value: 2.72e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGtvnenQAISTINLKVNEGDFVtVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRaQY 81
Cdd:cd03264 1 LQLENLTKRYGKK-----RALDGVSLTLGPGMYG-LLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLR-RR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPllGTASNMSLEDnmMITYrkgFKWLKRSLNHKMREffRSELVQLRMGLEDRMKENLALFSGGQRQALTLLMM 161
Cdd:cd03264 74 IGYLPQEF--GVYPNFTVRE--FLDY---IAWLKGIPSKEVKA--RVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 162 VLSRPDLILLDEHTAALDPKNAAIVLELtnkfIQEYKLTAMMI--THNMSHAIEYGNRLLMMDKGEIIFE 229
Cdd:cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNL----LSELGEDRIVIlsTHIVEDVESLCNQVAVLNKGKLVFE 210
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-226 |
4.90e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 100.19 E-value: 4.90e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:PRK13650 4 IIEVKNLTFKYKEDQ--EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNP---LLGTasnmSLEDNMmityrkGFKWLKRSLNHK-MREFFrSELVQLrMGLEDRMKENLALFSGGQRQAL 156
Cdd:PRK13650 82 KIGMVFQNPdnqFVGA----TVEDDV------AFGLENKGIPHEeMKERV-NEALEL-VGMQDFKEREPARLSGGQKQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHaIEYGNRLLMMDKGEI 226
Cdd:PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-VALSDRVLVMKNGQV 218
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-226 |
4.97e-25 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 99.40 E-value: 4.97e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAG--TITP---TVGSIHLNDRNITrdpE 75
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHN-----IDLNIDQGEVVVIIGPSGSGKSTLLRCINKleEITSgdlIVDGLKVNDPKVD---E 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 76 YKRAQYIGRIFQNPLLgtASNMSLEDNMMITYRKGFKWLKRSLNHKMREFFRselvqlRMGLEDRMKENLALFSGGQRQA 155
Cdd:PRK09493 73 RLIRQEAGMVFQQFYL--FPHLTALENVMFGPLRVRGASKEEAEKQARELLA------KVGLAERAHHYPSELSGGQQQR 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 156 LTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRI 214
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
22-224 |
5.36e-25 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 99.08 E-value: 5.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 22 ISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRdPEYKRAQyigrIFQN----PLLGTASNM 97
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE-PGPDRMV----VFQNysllPWLTVRENI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 98 SLEDNMMItyrkgfkwlkRSLNHKMREFFRSELVQLrMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAA 177
Cdd:TIGR01184 76 ALAVDRVL----------PDLSKSERRAIVEEHIAL-VGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2046106881 178 LDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKG 224
Cdd:TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
18-240 |
1.28e-24 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 97.98 E-value: 1.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 18 ENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ----YI--GR-IFqnPL 90
Cdd:TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARagiaYVpqGReIF--PR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 91 LgtasnmSLEDNMMItyrkGFKWLKRSLNHKMREFFrsELVQLRMGLEDRMKENLalfSGGQRQALTLLMMVLSRPDLIL 170
Cdd:TIGR03410 90 L------TVEENLLT----GLAALPRRSRKIPDEIY--ELFPVLKEMLGRRGGDL---SGGQQQQLAIARALVTRPKLLL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 171 LDEHTAALDPknaAIVLEL---TNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE------KKALTV 240
Cdd:TIGR03410 155 LDEPTEGIQP---SIIKDIgrvIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEldedkvRRYLAV 230
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-221 |
3.20e-24 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 97.63 E-value: 3.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFnQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITrDPEYKRaq 80
Cdd:COG4525 3 MLTVRHVSVRY-PGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVT-GPGADR-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yiGRIFQN----PLLGTASNMSLednmmityrkGFKWlkRSLNHKMREFFRSELVQLrMGLEDRMKENLALFSGGQRQAL 156
Cdd:COG4525 79 --GVVFQKdallPWLNVLDNVAF----------GLRL--RGVPKAERRARAEELLAL-VGLADFARRRIWQLSGGMRQRV 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDpknaaivlELTNKFIQEYKLT--------AMMITHNMSHAIEYGNRLLMM 221
Cdd:COG4525 144 GIARALAADPRFLLMDEPFGALD--------ALTREQMQELLLDvwqrtgkgVFLITHSVEEALFLATRLVVM 208
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-227 |
3.50e-24 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 96.17 E-value: 3.50e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 3 ELKNVSMIFNQGTvnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYI 82
Cdd:cd03226 1 RIENISFSYKKGT----EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 83 griFQNP--LLGTASnMSLEdnmmityrkgfkwLKRSLNHKMREFFRSELVQLRMGLEDRMKENLALFSGGQRQALTLLM 160
Cdd:cd03226 77 ---MQDVdyQLFTDS-VREE-------------LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAA 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 161 MVLSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03226 140 ALLSGKDLLIFDEPTSGLDYKNMERVGELIRE-LAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-244 |
4.61e-24 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 99.25 E-value: 4.61e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRaqY 81
Cdd:PRK09452 15 VELRGISKSFD-----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR--H 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLgtASNMSLEDNMMITYRkgfkwLKRSLNHKMREFFRSelvQLRM-GLEDRMKENLALFSGGQRQALTLLM 160
Cdd:PRK09452 88 VNTVFQSYAL--FPHMTVFENVAFGLR-----MQKTPAAEITPRVME---ALRMvQLEEFAQRKPHQLSGGQQQRVAIAR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 161 MVLSRPDLILLDEHTAALDPK-NAAIVLELtnKFIQ-EYKLTAMMITHNMSHAIEYGNRLLMMDKGEIifEAAG------ 232
Cdd:PRK09452 158 AVVNKPKVLLLDESLSALDYKlRKQMQNEL--KALQrKLGITFVFVTHDQEEALTMSDRIVVMRDGRI--EQDGtpreiy 233
|
250
....*....|..
gi 2046106881 233 EEKKALTVEKLI 244
Cdd:PRK09452 234 EEPKNLFVARFI 245
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-227 |
5.16e-24 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 96.02 E-value: 5.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:cd03244 3 IEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLL--GT-ASNM----SLEDNMMITYrkgfkwLKRSlnhKMREFFrselVQLRMGLEDRMKENLALFSGGQRQ 154
Cdd:cd03244 80 ISIIPQDPVLfsGTiRSNLdpfgEYSDEELWQA------LERV---GLKEFV----ESLPGGLDTVVEEGGENLSVGQRQ 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMSHAIEYgNRLLMMDKGEII 227
Cdd:cd03244 147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDC--TVLTIAHRLDTIIDS-DRILVLDKGRVV 216
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-234 |
7.43e-24 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 96.60 E-value: 7.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNqGTVnenqAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:PRK11300 5 LLSVSGLMMRFG-GLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 Y-IGRIFQNPLLgtASNMSLEDNMMIT-YRKgfkwLKRSLNH---KMREFFRSELVQL--------RMGLED---RMKEN 144
Cdd:PRK11300 80 MgVVRTFQHVRL--FREMTVIENLLVAqHQQ----LKTGLFSgllKTPAFRRAESEALdraatwleRVGLLEhanRQAGN 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 145 LALfsgGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKG 224
Cdd:PRK11300 154 LAY---GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230
|
250
....*....|
gi 2046106881 225 EIIFEAAGEE 234
Cdd:PRK11300 231 TPLANGTPEE 240
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-226 |
9.70e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 96.74 E-value: 9.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNPllgtasnmsleDNM----MITYRKGFKWLKRSLNH-KMREFFRSELVQLRMgLEDRMKENLALfSGGQRQA 155
Cdd:PRK13648 84 HIGIVFQNP-----------DNQfvgsIVKYDVAFGLENHAVPYdEMHRRVSEALKQVDM-LERADYEPNAL-SGGQKQR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 156 LTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEyGNRLLMMDKGEI 226
Cdd:PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTV 220
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-221 |
1.03e-23 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 99.67 E-value: 1.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNqgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:TIGR02857 322 LEFSGVSVAYP----GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLGTAsnmSLEDNMMItYRKGFKwlkrslNHKMREFFR----SELVQ-LRMGLEDRMKENLALFSGGQRQAL 156
Cdd:TIGR02857 398 IAWVPQHPFLFAG---TIAENIRL-ARPDAS------DAEIREALEraglDEFVAaLPQGLDTPIGEGGAGLSGGQAQRL 467
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMSHAIEYgNRLLMM 221
Cdd:TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVTHRLALAALA-DRIVVL 529
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
25-234 |
1.48e-23 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 95.30 E-value: 1.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY-IGRIFQNPLLgtASNMSLEDNM 103
Cdd:cd03218 19 VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLgIGYLPQEASI--FRKLTVEENI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 104 MITYRkgfkwlkrsLNHKMREFFRSELVQLrmgLED----RMKENLALF-SGGQRQALTLLMMVLSRPDLILLDEHTAAL 178
Cdd:cd03218 97 LAVLE---------IRGLSKKEREEKLEEL---LEEfhitHLRKSKASSlSGGERRRVEIARALATNPKFLLLDEPFAGV 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 179 DPKNAA----IVLELTNKFIqeykltAMMIT-HNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:cd03218 165 DPIAVQdiqkIIKILKDRGI------GVLITdHNVRETLSITDRAYIIYEGKVLAEGTPEE 219
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-247 |
1.52e-23 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 95.54 E-value: 1.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVG-SIHLNDR-----NItrdP 74
Cdd:COG1119 3 LLELRNVTVRRGGKTI-----LDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGErrggeDV---W 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 75 EYKRaqYIGrIFQNPL-LGTASNMSLEDnMMITyrkGFK-----WlkRSLNHKMREffRSELVQLRMGLEDRMKENLALF 148
Cdd:COG1119 75 ELRK--RIG-LVSPALqLRFPRDETVLD-VVLS---GFFdsiglY--REPTDEQRE--RARELLELLGLAHLADRPFGTL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 149 SGGQRQaLTLL---MMvlSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGE 225
Cdd:COG1119 144 SQGEQR-RVLIaraLV--KDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGR 220
|
250 260
....*....|....*....|..
gi 2046106881 226 IIfeAAGEEKKALTVEKLIDKF 247
Cdd:COG1119 221 VV--AAGPKEEVLTSENLSEAF 240
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-233 |
1.67e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 96.21 E-value: 1.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSI---HLNDRNITRDPEYK 77
Cdd:PRK13644 1 MIRLENVSYSYPDGT----PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVlvsGIDTGDFSKLQGIR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RaqYIGRIFQNPLLGTASNMSLED------NMMITYRKGFKWLKRSLnhkmreffrselvqLRMGLEDRMKENLALFSGG 151
Cdd:PRK13644 77 K--LVGIVFQNPETQFVGRTVEEDlafgpeNLCLPPIEIRKRVDRAL--------------AEIGLEKYRHRSPKTLSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 152 QRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHaIEYGNRLLMMDKGEIIFEAA 231
Cdd:PRK13644 141 QGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK-TIVYITHNLEE-LHDADRIIVMDRGKIVLEGE 218
|
..
gi 2046106881 232 GE 233
Cdd:PRK13644 219 PE 220
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
15-234 |
1.78e-23 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 95.85 E-value: 1.78e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 15 TVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTIT--PTVGS-IHLNDRNI------TRDPEYKRAQyIGRI 85
Cdd:PRK09984 13 TFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdKSAGShIELLGRTVqregrlARDIRKSRAN-TGYI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 86 FQNplLGTASNMSLEDNMMIT-------YRKGFKWLKRSLNHkmreffRSELVQLRMGLEDRMKENLALFSGGQRQALTL 158
Cdd:PRK09984 92 FQQ--FNLVNRLSVLENVLIGalgstpfWRTCFSWFTREQKQ------RALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 159 LMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK09984 164 ARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-246 |
3.61e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 95.14 E-value: 3.61e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPE--YKR 78
Cdd:PRK13639 1 ILETRDLKYSYPDGT----EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKslLEV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 79 AQYIGRIFQNPLLGTASNMSLED------NMMITYRKGFKWLKRSLNhkmreffrselvqlRMGLEDRMKENLALFSGGQ 152
Cdd:PRK13639 77 RKTVGIVFQNPDDQLFAPTVEEDvafgplNLGLSKEEVEKRVKEALK--------------AVGMEGFENKPPHHLSGGQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 153 RQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEaaG 232
Cdd:PRK13639 143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKE--G 219
|
250
....*....|....
gi 2046106881 233 EEKKALTVEKLIDK 246
Cdd:PRK13639 220 TPKEVFSDIETIRK 233
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
2-255 |
4.34e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 95.20 E-value: 4.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 I----GRIFQNPLLGTASNMSLED------NMMITYRKGFKWLKRSLNhkmreffrseLVQLRMGLEDRMKENLalfSGG 151
Cdd:PRK13649 83 IrkkvGLVFQFPESQLFEETVLKDvafgpqNFGVSQEEAEALAREKLA----------LVGISESLFEKNPFEL---SGG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 152 QRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIF--- 228
Cdd:PRK13649 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK-LHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLsgk 228
|
250 260 270
....*....|....*....|....*....|....
gi 2046106881 229 ------EAAGEEKKALTVEKlIDKF-HQIRHKSF 255
Cdd:PRK13649 229 pkdifqDVDFLEEKQLGVPK-ITKFaQRLADRGI 261
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-234 |
9.57e-23 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 93.17 E-value: 9.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG1137 3 TLEAENLVKSYGKRTV-----VKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 Y-IG------RIFQnpllgtasNMSLEDNMMI---TYRKGFKWLKRSLNHKMREFfrselvqlrmGLEdRMKENLAL-FS 149
Cdd:COG1137 78 LgIGylpqeaSIFR--------KLTVEDNILAvleLRKLSKKEREERLEELLEEF----------GIT-HLRKSKAYsLS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 150 GGQRQ------ALTllmmvlSRPDLILLDEHTAALDPKNAA----IVLELTNKFIqeykltAMMIT-HNMSHAIEYGNRL 218
Cdd:COG1137 139 GGERRrveiarALA------TNPKFILLDEPFAGVDPIAVAdiqkIIRHLKERGI------GVLITdHNVRETLGICDRA 206
|
250
....*....|....*.
gi 2046106881 219 LMMDKGEIIFEAAGEE 234
Cdd:COG1137 207 YIISEGKVLAEGTPEE 222
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
2-234 |
1.20e-22 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 95.17 E-value: 1.20e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAqy 81
Cdd:PRK11432 7 VVLKNITKRFGSNTV-----IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLgtASNMSLEDNmmITYrkGFKWLKRS---LNHKMREFFrsELVQLrMGLEDRMKENLalfSGGQRQALTL 158
Cdd:PRK11432 80 ICMVFQSYAL--FPHMSLGEN--VGY--GLKMLGVPkeeRKQRVKEAL--ELVDL-AGFEDRYVDQI---SGGQQQRVAL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 159 LMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE 223
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-234 |
1.25e-22 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 95.29 E-value: 1.25e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQgtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAq 80
Cdd:PRK11607 19 LLEIRNLTKSFDG-----QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPLLgtASNMSLEDNMMITYRKGfKWLKRSLNHKMREFFrsELVQlrmgLEDRMKENLALFSGGQRQALTLLM 160
Cdd:PRK11607 93 -INMMFQSYAL--FPHMTVEQNIAFGLKQD-KLPKAEIASRVNEML--GLVH----MQEFAKRKPHQLSGGQRQRVALAR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 161 MVLSRPDLILLDEHTAALDPK-NAAIVLELTNkFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK11607 163 SLAKRPKLLLLDEPMGALDKKlRDRMQLEVVD-ILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
21-229 |
1.49e-22 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 92.78 E-value: 1.49e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDrnitRDPEYKRAQYIGRIfqNPLLGTASNMSLE 100
Cdd:cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG----LVPWKRRKKFLRRI--GVVFGQKTQLWWD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 101 dnmmITYRKGFKWLKRSLNHKMREFFRS--ELVQLrMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAAL 178
Cdd:cd03267 110 ----LPVIDSFYLLAAIYDLPPARFKKRldELSEL-LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 179 DpknaAIVLELTNKFIQEY----KLTAMMITHNMsHAIE-YGNRLLMMDKGEIIFE 229
Cdd:cd03267 185 D----VVAQENIRNFLKEYnrerGTTVLLTSHYM-KDIEaLARRVLVIDKGRLLYD 235
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-234 |
1.87e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 93.23 E-value: 1.87e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNvsMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:PRK13642 4 ILEVEN--LVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNP---LLGTasnmSLEDNMmityrkgfkwlkrSLNHKMREFFRSELVQ------LRMGLEDRMKENLALFSGG 151
Cdd:PRK13642 82 KIGMVFQNPdnqFVGA----TVEDDV-------------AFGMENQGIPREEMIKrvdealLAVNMLDFKTREPARLSGG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 152 QRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEyGNRLLMMDKGEIIFEAA 231
Cdd:PRK13642 145 QKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAA 223
|
...
gi 2046106881 232 GEE 234
Cdd:PRK13642 224 PSE 226
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-243 |
2.39e-22 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 92.49 E-value: 2.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG4559 1 MLEAENLSVRLGGRTL-----LDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELAR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGrifqnpLLGTASNMS-----LEDNMM--ITYRKGFKWLKRSLNHKMreffrsELVQLrMGLEDRMKENLalfSGGQR 153
Cdd:COG4559 76 RRA------VLPQHSSLAfpftvEEVVALgrAPHGSSAAQDRQIVREAL------ALVGL-AHLAGRSYQTL---SGGEQ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 154 Q------ALTLLM-MVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:COG4559 140 QrvqlarVLAQLWePVDGGPRWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQGRL 218
|
250
....*....|....*..
gi 2046106881 227 IfeAAGEEKKALTVEKL 243
Cdd:COG4559 219 V--AQGTPEEVLTDELL 233
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
15-230 |
2.81e-22 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 91.12 E-value: 2.81e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 15 TVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDpeYKRAQYIGRIFQNPllGTA 94
Cdd:cd03268 9 TYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAP--GFY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 95 SNMSLEDNmmityrkgfkwLKRSLNHKMREFFRSELVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEH 174
Cdd:cd03268 85 PNLTAREN-----------LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 175 TAALDPKNAAIVLELTNKfIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEA 230
Cdd:cd03268 154 TNGLDPDGIKELRELILS-LRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-227 |
2.86e-22 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 92.12 E-value: 2.86e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLF---NLI----AGTITptVGSIHLN-DRNITR 72
Cdd:PRK11264 3 AIEVKNLVKKFHGQTV-----LHGIDLEVKPGEVVAIIGPSGSGKTTLLrciNLLeqpeAGTIR--VGDITIDtARSLSQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 73 DPEYKRA--QYIGRIFQNplLGTASNMSLEDNMMityrKGFKWLKRSLNHKMREFFRSELVQLRM-GLEDRMKENLalfS 149
Cdd:PRK11264 76 QKGLIRQlrQHVGFVFQN--FNLFPHRTVLENII----EGPVIVKGEPKEEATARARELLAKVGLaGKETSYPRRL---S 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 150 GGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:PRK11264 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIV 223
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-227 |
2.98e-22 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 92.41 E-value: 2.98e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTL---FN----LIAG-TITptvGSIHLNDRNI--- 70
Cdd:COG1117 12 IEVRNLNVYYG-----DKQALKDINLDIPENKVTALIGPSGCGKSTLlrcLNrmndLIPGaRVE---GEILLDGEDIydp 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 71 TRDPEYKRAQyIGRIFQ--NPLlgtasNMSLEDNmmITYrkGFKwlkrsLNHKMReffRSEL---VQ--LRM-GL----E 138
Cdd:COG1117 84 DVDVVELRRR-VGMVFQkpNPF-----PKSIYDN--VAY--GLR-----LHGIKS---KSELdeiVEesLRKaALwdevK 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 139 DRMKEN-LALfSGGQRQAL----TLLMmvlsRPDLILLDEHTAALDPKNAAIVLELtnkfIQEYK--LTAMMITHNMSHA 211
Cdd:COG1117 146 DRLKKSaLGL-SGGQQQRLciarALAV----EPEVLLMDEPTSALDPISTAKIEEL----ILELKkdYTIVIVTHNMQQA 216
|
250
....*....|....*.
gi 2046106881 212 IEYGNRLLMMDKGEII 227
Cdd:COG1117 217 ARVSDYTAFFYLGELV 232
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1-229 |
3.33e-22 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 92.56 E-value: 3.33e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVN----ENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPE 75
Cdd:TIGR02769 2 LLEVRDVTHTYRTGGLFgakqRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQlDRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 76 YKRA--QYIGRIFQNPLLGTASNMSLEDNMmityRKGFKWLKrSLNHKMREFFRSELVQLrMGLEDRMKENL-ALFSGGQ 152
Cdd:TIGR02769 82 QRRAfrRDVQLVFQDSPSAVNPRMTVRQII----GEPLRHLT-SLDESEQKARIAELLDM-VGLRSEDADKLpRQLSGGQ 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 153 RQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFE 229
Cdd:TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-227 |
3.71e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 93.23 E-value: 3.71e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IgrifqnpllgtasnmSLEDNMMITYRKGFKWLK------------------------------RSLNHKMREFFRSELV 131
Cdd:PRK13651 83 V---------------LEKLVIQKTRFKKIKKIKeirrrvgvvfqfaeyqlfeqtiekdiifgpVSMGVSKEEAKKRAAK 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 132 QLRM-GL-EDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMS 209
Cdd:PRK13651 148 YIELvGLdESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK-TIILVTHDLD 226
|
250
....*....|....*...
gi 2046106881 210 HAIEYGNRLLMMDKGEII 227
Cdd:PRK13651 227 NVLEWTKRTIFFKDGKII 244
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-229 |
4.67e-22 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 90.06 E-value: 4.67e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITrDPEYKRAQY 81
Cdd:cd03247 1 LSINNVSFSYPE---QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS-DLEKALSSL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLGTASnmslednmmityrkgfkwlkrslnhkmreffrselvqlrmgledrMKENLAL-FSGGQRQALTLLM 160
Cdd:cd03247 77 ISVLNQRPYLFDTT---------------------------------------------LRNNLGRrFSGGERQRLALAR 111
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 161 MVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMShAIEYGNRLLMMDKGEIIFE 229
Cdd:cd03247 112 ILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK--TLIWITHHLT-GIEHMDKILFLENGKIIMQ 177
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-229 |
5.32e-22 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 92.48 E-value: 5.32e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFnqGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRD------- 73
Cdd:COG4152 1 MLELKGLTKRF--GDK---TAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEdrrrigy 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 74 -PE----YKRaqyigrifqnpllgtasnMSLEDNmmITY---RKGFKwlKRSLNHKMREFFRselvqlRMGLEDRMKENL 145
Cdd:COG4152 76 lPEerglYPK------------------MKVGEQ--LVYlarLKGLS--KAEAKRRADEWLE------RLGLGDRANKKV 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 146 ALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELtnkfIQEYKLTAMMI---THNMSHAIEYGNRLLMMD 222
Cdd:COG4152 128 EELSKGNQQKVQLIAALLHDPELLILDEPFSGLDPVNVELLKDV----IRELAAKGTTVifsSHQMELVEELCDRIVIIN 203
|
....*..
gi 2046106881 223 KGEIIFE 229
Cdd:COG4152 204 KGRKVLS 210
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
2-234 |
5.58e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 92.39 E-value: 5.58e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKR--- 78
Cdd:PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKlkp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 79 -AQYIGRIFQNPLLGTASNMSLEDnmmITY-RKGFKWLKRSLNHKMREFFrsELVQLRMGLEDRMKENLalfSGGQ--RQ 154
Cdd:PRK13634 83 lRKKVGIVFQFPEHQLFEETVEKD---ICFgPMNFGVSEEDAKQKAREMI--ELVGLPEELLARSPFEL---SGGQmrRV 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ALT-LLMMvlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGE 233
Cdd:PRK13634 155 AIAgVLAM---EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231
|
.
gi 2046106881 234 E 234
Cdd:PRK13634 232 E 232
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-226 |
6.88e-22 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 89.20 E-value: 6.88e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRaQ 80
Cdd:cd03246 1 LEVENVSFRYPG---AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELG-D 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNpllgtasnmslednmmityrkgfkwlkrslnhkmreffrselVQLrmgLEDRMKENlaLFSGGQRQALTLLM 160
Cdd:cd03246 77 HVGYLPQD------------------------------------------DEL---FSGSIAEN--ILSGGQRQRLGLAR 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 161 MVLSRPDLILLDEHTAALDPKNAAIVLELTnKFIQEYKLTAMMITHNMShAIEYGNRLLMMDKGEI 226
Cdd:cd03246 110 ALYGNPRILVLDEPNSHLDVEGERALNQAI-AALKAAGATRIVIAHRPE-TLASADRILVLEDGRV 173
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
5-251 |
1.41e-21 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 90.82 E-value: 1.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 5 KNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYIGR 84
Cdd:PRK10253 11 EQLTLGYGKYTVAEN-----LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 85 IFQNPLlgTASNMSLEDnmmITYRKGF-------KWLKR---SLNHKMREffrselvqlrMGLEDRMKENLALFSGGQRQ 154
Cdd:PRK10253 86 LAQNAT--TPGDITVQE---LVARGRYphqplftRWRKEdeeAVTKAMQA----------TGITHLADQSVDTLSGGQRQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIfeAAGEE 234
Cdd:PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV--AQGAP 228
|
250
....*....|....*..
gi 2046106881 235 KKALTVEkLIDKFHQIR 251
Cdd:PRK10253 229 KEIVTAE-LIERIYGLR 244
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
21-251 |
2.12e-21 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 89.85 E-value: 2.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNI-TRDPEYKRAQyIGRIFQNPLLgtaSNMSL 99
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLaLADPAWLRRQ-VGVVLQENVL---FNRSI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 100 EDNMMITyRKGFKWLKRSLNHKM---REFFRselvQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTA 176
Cdd:cd03252 93 RDNIALA-DPGMSMERVIEAAKLagaHDFIS----ELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATS 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 177 ALDPKNAAIVLELTNKFIQeyKLTAMMITHNMShAIEYGNRLLMMDKGEIIfeAAGEEKKALTVEKLIDKFHQIR 251
Cdd:cd03252 168 ALDYESEHAIMRNMHDICA--GRTVIIIAHRLS-TVKNADRIIVMEKGRIV--EQGSHDELLAENGLYAYLYQLQ 237
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-227 |
2.75e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 90.24 E-value: 2.75e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITP--------TVGSIHLNDRNItrd 73
Cdd:PRK13640 6 VEFKHVSFTYPD---SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPddnpnskiTVDGITLTAKTV--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 74 peYKRAQYIGRIFQNPllgtasnmsleDNMMITYRKG----FKWLKRSL-NHKMREFFRSELVQLrmGLEDRMKENLALF 148
Cdd:PRK13640 80 --WDIREKVGIVFQNP-----------DNQFVGATVGddvaFGLENRAVpRPEMIKIVRDVLADV--GMLDYIDSEPANL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 149 SGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAiEYGNRLLMMDKGEII 227
Cdd:PRK13640 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLL 222
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-234 |
3.69e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 89.86 E-value: 3.69e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNqgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:PRK13652 3 LIETRDLCYSYS----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNPLLGTASNMSLEDNMMITYRKGFKwlKRSLNHKMREFFRSelvqlrMGLEDRMKENLALFSGGQRQALTLLM 160
Cdd:PRK13652 79 FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD--EETVAHRVSSALHM------LGLEELRDRVPHHLSGGEKKRVAIAG 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2046106881 161 MVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE 224
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-248 |
4.53e-21 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 89.06 E-value: 4.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:PRK13548 2 MLEARNLSVRLGGRTL-----LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNPLLG---TASN---MSLednmmITYRKGFKWLKRSLNHKMReffRSELVqlrmGLEDRmkENLALfSGGQRQ 154
Cdd:PRK13548 77 RRAVLPQHSSLSfpfTVEEvvaMGR-----APHGLSRAEDDALVAAALA---QVDLA----HLAGR--DYPQL-SGGEQQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ------ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIf 228
Cdd:PRK13548 142 rvqlarVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV- 220
|
250 260
....*....|....*....|
gi 2046106881 229 eAAGEEKKALTVEKLIDKFH 248
Cdd:PRK13548 221 -ADGTPAEVLTPETLRRVYG 239
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
21-227 |
4.59e-21 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 89.24 E-value: 4.59e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYK----RAQYIGRIFQNplLGTASN 96
Cdd:cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKElrelRRKKISMVFQS--FALLPH 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 97 MSLEDNmmITYrkGFKWlkRSLNHKMREFfRSELVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTA 176
Cdd:cd03294 117 RTVLEN--VAF--GLEV--QGVPRAEREE-RAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFS 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2046106881 177 ALDPknaAIVLELTNKFIQ---EYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:cd03294 190 ALDP---LIRREMQDELLRlqaELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-226 |
1.10e-20 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 89.76 E-value: 1.10e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRdpEYKRAQY 81
Cdd:PRK10851 3 IEIANIKKSFGR-----TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR--LHARDRK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLgtASNMSLEDNMMItyrkGFKWLKR-------SLNHKMREFFrsELVQLRMgLEDRMKENLalfSGGQRQ 154
Cdd:PRK10851 76 VGFVFQHYAL--FRHMTVFDNIAF----GLTVLPRrerpnaaAIKAKVTQLL--EMVQLAH-LADRYPAQL---SGGQKQ 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDpknAAIVLELTN---KFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:PRK10851 144 RVALARALAVEPQILLLDEPFGALD---AQVRKELRRwlrQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1-227 |
1.64e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 88.75 E-value: 1.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 Y----------------IGRIFQNPLLGTASNMSLEDNMMITYRKGfkwLKRSLNHKMREFFRSelvqlRMGL-EDRMKE 143
Cdd:PRK13631 101 TnpyskkiknfkelrrrVSMVFQFPEYQLFKDTIEKDIMFGPVALG---VKKSEAKKLAKFYLN-----KMGLdDSYLER 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 144 NLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDK 223
Cdd:PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNK-TVFVITHTMEHVLEVADEVIVMDK 251
|
....
gi 2046106881 224 GEII 227
Cdd:PRK13631 252 GKIL 255
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
2-243 |
1.66e-20 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 90.42 E-value: 1.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNqgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:PRK10522 323 LELRNVTFAYQ----DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLL--------GTASNMSLednmmityrkGFKWLKR-SLNHKMReffrselvqlrmgLEDRMKENLALfSGGQ 152
Cdd:PRK10522 399 FSAVFTDFHLfdqllgpeGKPANPAL----------VEKWLERlKMAHKLE-------------LEDGRISNLKL-SKGQ 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 153 RQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNmSHAIEYGNRLLMMDKGEIIfEAAG 232
Cdd:PRK10522 455 KKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD-DHYFIHADRLLEMRNGQLS-ELTG 532
|
250
....*....|....
gi 2046106881 233 EEKKALT---VEKL 243
Cdd:PRK10522 533 EERDAASrdaVART 546
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-226 |
2.68e-20 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 87.04 E-value: 2.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 4 LKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIhlndrnitrdpeykraqyig 83
Cdd:PRK11247 15 LNAVSKRYGERTV-----LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-------------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 84 rifqnpLLGTA--SNMSLEDNMMITYRKGFKWlKRSLNH---KMREFFRSELVQL--RMGLEDRMKENLALFSGGQRQAL 156
Cdd:PRK11247 70 ------LAGTAplAEAREDTRLMFQDARLLPW-KKVIDNvglGLKGQWRDAALQAlaAVGLADRANEWPAALSGGQKQRV 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:PRK11247 143 ALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
21-211 |
2.89e-20 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 85.36 E-value: 2.89e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHlndrnitRDPEYKRAQYIGRIfqnpllgtasnmSLE 100
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVR-------RAGGARVAYVPQRS------------EVP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 101 DNMMITYRK----GFkWLKRSLNHKMREFFRSELVQL--RMGLEDRMKENLALFSGGQRQAlTLLMMVL-SRPDLILLDE 173
Cdd:NF040873 68 DSLPLTVRDlvamGR-WARRGLWRRLTRDDRAAVDDAleRVGLADLAGRQLGELSGGQRQR-ALLAQGLaQEADLLLLDE 145
|
170 180 190
....*....|....*....|....*....|....*...
gi 2046106881 174 HTAALDPKNAAIVLELTnKFIQEYKLTAMMITHNMSHA 211
Cdd:NF040873 146 PTTGLDAESRERIIALL-AEEHARGATVVVVTHDLELV 182
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
16-211 |
3.74e-20 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 85.92 E-value: 3.74e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 16 VNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNI-TRDPEYKRAQyIGRIFQNP-LLGT 93
Cdd:PRK10247 17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIsTLKPEIYRQQ-VSYCAQTPtLFGD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 94 asnmSLEDNMMityrkgFKWLKRSlNHKMREFFRSELVqlRMGLEDRM-KENLALFSGGQRQALTLLMMVLSRPDLILLD 172
Cdd:PRK10247 96 ----TVYDNLI------FPWQIRN-QQPDPAIFLDDLE--RFALPDTIlTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2046106881 173 EHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHN---MSHA 211
Cdd:PRK10247 163 EITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDkdeINHA 204
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-206 |
3.86e-20 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 89.35 E-value: 3.86e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 4 LKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSihlndrnITRDPEYKraqyIG 83
Cdd:COG0488 1 LENLSKSFGGRPLLDD-----VSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGE-------VSIPKGLR----IG 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 84 RIFQNPLLGtaSNMSLEDNMMITYRKGFKWLKR--SLNHKMREffrSELVQLRMG-LEDRMKEN---------------- 144
Cdd:COG0488 65 YLPQEPPLD--DDLTVLDTVLDGDAELRALEAEleELEAKLAE---PDEDLERLAeLQEEFEALggweaearaeeilsgl 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 145 ----------LALFSGGQR------QALtllmmvLSRPDLILLDEHTAALDpkNAAIV-LEltnKFIQEYKLTAMMITH 206
Cdd:COG0488 140 gfpeedldrpVSELSGGWRrrvalaRAL------LSEPDLLLLDEPTNHLD--LESIEwLE---EFLKNYPGTVLVVSH 207
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
25-232 |
3.91e-20 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 88.23 E-value: 3.91e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDF------------VTVI-GSNGAGKSTLFNLIAGTITPTVGSIHLND-------RNITRDPEyKRAqyIGR 84
Cdd:COG4148 5 VDFRLRRGGFtldvdftlpgrgVTALfGPSGSGKTTLLRAIAGLERPDSGRIRLGGevlqdsaRGIFLPPH-RRR--IGY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 85 IFQNPLLgtASNMSLEDNmmITYrkGfkwLKRSLNHKMREFFrSELVQLrMGLE---DRMKENLalfSGGQRQ------A 155
Cdd:COG4148 82 VFQEARL--FPHLSVRGN--LLY--G---RKRAPRAERRISF-DEVVEL-LGIGhllDRRPATL---SGGERQrvaigrA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 156 LtllmmvLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIfeAAG 232
Cdd:COG4148 148 L------LSSPRLLLMDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVV--ASG 216
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-207 |
4.13e-20 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 85.95 E-value: 4.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIF---NQGTVnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDR----NITRD 73
Cdd:COG4778 4 LLEVENLSKTFtlhLQGGK-RLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDggwvDLAQA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 74 PEYK----RAQYIGRIFQ---------------NPLLgtASNMSLEDnmmiTYRKGFKWLKRsLNhkmreffrselvqlr 134
Cdd:COG4778 83 SPREilalRRRTIGYVSQflrviprvsaldvvaEPLL--ERGVDREE----ARARARELLAR-LN--------------- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 135 mgledrMKENL-----ALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELtnkfIQEYKL--TAM-MITH 206
Cdd:COG4778 141 ------LPERLwdlppATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVEL----IEEAKArgTAIiGIFH 210
|
.
gi 2046106881 207 N 207
Cdd:COG4778 211 D 211
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-247 |
4.68e-20 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 88.36 E-value: 4.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNItrdpEYKRAQ 80
Cdd:PRK09536 3 MIDVSDLSVEFGDTTV-----LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV----EALSAR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNPLLGTAsnMSLEDNMMITYRKGfkwlkrslNHKMREFFRSELVQLRMGLEDRMKE-NLALF--------SGG 151
Cdd:PRK09536 74 AASRRVASVPQDTS--LSFEFDVRQVVEMG--------RTPHRSRFDTWTETDRAAVERAMERtGVAQFadrpvtslSGG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 152 QRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEIifEAA 231
Cdd:PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGK-TAVAAIHDLDLAARYCDELVLLADGRV--RAA 220
|
250
....*....|....*.
gi 2046106881 232 GEEKKALTVEKLIDKF 247
Cdd:PRK09536 221 GPPADVLTADTLRAAF 236
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
2-264 |
7.38e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 86.60 E-value: 7.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLND----RNITRDPEYK 77
Cdd:PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDyaipANLKKIKEVK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAQY-IGRIFQNPllgtaSNMSLEDnmmiTYRKGFKWLKRSLNHKMREFFRS--ELVQLRMGLEDRMKENLALFSGGQRQ 154
Cdd:PRK13645 87 RLRKeIGLVFQFP-----EYQLFQE----TIEKDIAFGPVNLGENKQEAYKKvpELLKLVQLPEDYVKRSPFELSGGQKR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII-----FE 229
Cdd:PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIsigspFE 237
|
250 260 270
....*....|....*....|....*....|....*
gi 2046106881 230 AAGEEKKALTVEKLIDKFHQIRHKSFENDRTLLSE 264
Cdd:PRK13645 238 IFSNQELLTKIEIDPPKLYQLMYKLKNKGIDLLNK 272
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
18-234 |
1.04e-19 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 85.41 E-value: 1.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 18 ENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNIT--RDPE-----YKRAQY------IGR 84
Cdd:PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvRDKDgqlkvADKNQLrllrtrLTM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 85 IFQNplLGTASNMSLEDNMMityRKGFKWLKRSlNHKMREffRSELVQLRMGLEDRMKENLAL-FSGGQRQALTLLMMVL 163
Cdd:PRK10619 97 VFQH--FNLWSHMTVLENVM---EAPIQVLGLS-KQEARE--RAVKYLAKVGIDERAQGKYPVhLSGGQQQRVSIARALA 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 164 SRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK10619 169 MEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQ 238
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-234 |
1.27e-19 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 85.13 E-value: 1.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG4604 1 MIEIKNVSKRYGGKVV-----LDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNPLLgtasnmsledNMMITYRkgfkwlkrslnhkmreffrsELV--------QLRMGLEDRMK--ENLALF-- 148
Cdd:COG4604 76 RLAILRQENHI----------NSRLTVR--------------------ELVafgrfpysKGRLTAEDREIidEAIAYLdl 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 149 -----------SGGQRQaLTLLMMVLSR-PDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGN 216
Cdd:COG4604 126 edladryldelSGGQRQ-RAFIAMVLAQdTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYAD 204
|
250
....*....|....*...
gi 2046106881 217 RLLMMDKGEIIFEAAGEE 234
Cdd:COG4604 205 HIVAMKDGRVVAQGTPEE 222
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-243 |
1.32e-19 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 87.77 E-value: 1.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFnqGTVNENQAIStinLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNIT-RDPEYKRA 79
Cdd:COG3845 5 ALELRGITKRF--GGVVANDDVS---LTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRiRSPRDAIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 QYIGRIFQNPLLgtASNMSLEDNMMITYRKGFKWL--KRSLNHKMREFfrSElvqlRMGLE---DRMKENLALfsgGQRQ 154
Cdd:COG3845 80 LGIGMVHQHFML--VPNLTVAENIVLGLEPTKGGRldRKAARARIREL--SE----RYGLDvdpDAKVEDLSV---GEQQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAageE 234
Cdd:COG3845 149 RVEILKALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGK-SIIFITHKLREVMAIADRVTVLRRGKVVGTV---D 224
|
....*....
gi 2046106881 235 KKALTVEKL 243
Cdd:COG3845 225 TAETSEEEL 233
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
19-207 |
1.53e-19 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 87.42 E-value: 1.53e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 19 NQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYIGRIFQNP-LLGTasnm 97
Cdd:TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAhLFDT---- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 98 SLEDNMMI-----TYRKGFKWLKRSlnhKMREFFRSelvqLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLD 172
Cdd:TIGR02868 424 TVRENLRLarpdaTDEELWAALERV---GLADWLRA----LPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 496
|
170 180 190
....*....|....*....|....*....|....*
gi 2046106881 173 EHTAALDPKNAAIVLELTNKFIQEYklTAMMITHN 207
Cdd:TIGR02868 497 EPTEHLDAETADELLEDLLAALSGR--TVVLITHH 529
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-227 |
2.35e-19 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 84.44 E-value: 2.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQgtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLI--AGTITPTV---GSIHLNDRNI--TRD 73
Cdd:PRK14239 5 ILQVSDLSVYYNK-----KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDLNPEVtitGSIVYNGHNIysPRT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 74 PEYKRAQYIGRIFQNPllgTASNMSLEDNMMITYR-KGFKwlkrsLNHKMREFFRSELVQLRMGLE--DRMKENLALFSG 150
Cdd:PRK14239 80 DTVDLRKEIGMVFQQP---NPFPMSIYENVVYGLRlKGIK-----DKQVLDEAVEKSLKGASIWDEvkDRLHDSALGLSG 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 151 GQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDRTGFFLDGDLI 226
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
2-227 |
2.39e-19 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 84.13 E-value: 2.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSmiFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNI-TRDPEYKRAQ 80
Cdd:cd03249 1 IEFKNVS--FRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIrDLNLRWLRSQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPLLgtaSNMSLEDNmmITYRKGfkwlKRSLNHKMR--------EFFRSelvqLRMGLEDRMKENLALFSGGQ 152
Cdd:cd03249 79 -IGLVSQEPVL---FDGTIAEN--IRYGKP----DATDEEVEEaakkanihDFIMS----LPDGYDTLVGERGSQLSGGQ 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 153 RQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMShAIEYGNRLLMMDKGEII 227
Cdd:cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGR--TTIVIAHRLS-TIRNADLIAVLQNGQVV 216
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1-227 |
4.26e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 84.40 E-value: 4.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRA- 79
Cdd:PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIk 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 ---QYIGRIFQNPLLGTASNMSLEDnmmityrKGFKWLKRSLNHKMREFFRSELVQLrMGLEDRMKENLAL-FSGGQRQA 155
Cdd:PRK13643 81 pvrKKVGVVFQFPESQLFEETVLKD-------VAFGPQNFGIPKEKAEKIAAEKLEM-VGLADEFWEKSPFeLSGGQMRR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2046106881 156 LTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES-IHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-229 |
5.32e-19 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 83.21 E-value: 5.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGT-----------------VNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSI 63
Cdd:COG1134 4 MIEVENVSKSYRLYHepsrslkelllrrrrtrREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 64 HLNdrnitrdpeykraqyiGRIfqNPLLGTAS----NMSLEDN------MMityrkGFKwlKRSLNHKMR---EFfrSEl 130
Cdd:COG1134 84 EVN----------------GRV--SALLELGAgfhpELTGRENiylngrLL-----GLS--RKEIDEKFDeivEF--AE- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 131 vqlrmgLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSH 210
Cdd:COG1134 136 ------LGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGR-TVIFVSHSMGA 208
|
250
....*....|....*....
gi 2046106881 211 AIEYGNRLLMMDKGEIIFE 229
Cdd:COG1134 209 VRRLCDRAIWLEKGRLVMD 227
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-229 |
6.03e-19 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 82.42 E-value: 6.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIF--NQGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKR 78
Cdd:cd03266 1 MITADALTKRFrdVKKTV---QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 79 AQyIGRIFqnpllgtaSNMSLEDNM----MITYRKGFKWLKRSLNHKmreffRSELVQLRMGLEDRMKENLALFSGGQRQ 154
Cdd:cd03266 78 RR-LGFVS--------DSTGLYDRLtareNLEYFAGLYGLKGDELTA-----RLEELADRLGMEELLDRRVGGFSTGMRQ 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLEltnkFIQEYK---LTAMMITHNMSHAIEYGNRLLMMDKGEIIFE 229
Cdd:cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALRE----FIRQLRalgKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-227 |
6.03e-19 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 83.14 E-value: 6.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTL---FNLIAgtiTPTVGSIHL--NDRNITRDPEY 76
Cdd:COG4161 3 IQLKNINCFYGS-----HQALFDINLECPSGETLVLLGPSGAGKSSLlrvLNLLE---TPDSGQLNIagHQFDFSQKPSE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 77 KRA----QYIGRIFQNPLLGtaSNMSLEDNMMITYRKGFKWLKRSLNHKMREFfrseLVQLRmgLEDRMKENLALFSGGQ 152
Cdd:COG4161 75 KAIrllrQKVGMVFQQYNLW--PHLTVMENLIEAPCKVLGLSKEQAREKAMKL----LARLR--LTDKADRFPLHLSGGQ 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 153 RQALTL---LMMvlsRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:COG4161 147 QQRVAIaraLMM---EPQVLLFDEPTAALDPEITAQVVEIIRE-LSQTGITQVIVTHEVEFARKVASQVVYMEKGRII 220
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
4-226 |
6.61e-19 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 85.08 E-value: 6.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 4 LKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAqyIG 83
Cdd:PRK11000 6 LRNVTKAYGDVVISKD-----INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG--VG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 84 RIFQN----PLLGTASNMSLednmmityrkGFKWL---KRSLNHKMREFfrSELVQLRMGLEDRMKEnlalFSGGQRQAL 156
Cdd:PRK11000 79 MVFQSyalyPHLSVAENMSF----------GLKLAgakKEEINQRVNQV--AEVLQLAHLLDRKPKA----LSGGQRQRV 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDpknAAIVLEL---TNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLD---AALRVQMrieISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-233 |
8.75e-19 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 82.62 E-value: 8.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITrdpEYKRAQ 80
Cdd:PRK11614 5 MLSFDKVSAHYG-----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDIT---DWQTAK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YI----------GRIFqnpllgtaSNMSLEDNMMItyrKGFKWLKRSLNHKMREFFrselvQLRMGLEDRMKENLALFSG 150
Cdd:PRK11614 77 IMreavaivpegRRVF--------SRMTVEENLAM---GGFFAERDQFQERIKWVY-----ELFPRLHERRIQRAGTMSG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 151 GQRQALTLLMMVLSRPDLILLDEHTAALDPknaAIVLEL--TNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIF 228
Cdd:PRK11614 141 GEQQMLAIGRALMSQPRLLLLDEPSLGLAP---IIIQQIfdTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVL 217
|
....*
gi 2046106881 229 EAAGE 233
Cdd:PRK11614 218 EDTGD 222
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
3-207 |
9.90e-19 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 82.42 E-value: 9.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 3 ELKNVSMifnqgTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAG--TITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:COG0396 2 EIKNLHV-----SVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGhpKYEVTSGSILLDGEDILELSPDERAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 Y-IGRIFQNP----------LLGTASNMSLEDNMmityrKGFKWLKRsLNHKMREffrselVQLRMGLEDRmkeNLAL-F 148
Cdd:COG0396 77 AgIFLAFQYPveipgvsvsnFLRTALNARRGEEL-----SAREFLKL-LKEKMKE------LGLDEDFLDR---YVNEgF 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 149 SGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHN 207
Cdd:COG0396 142 SGGEKKRNEILQMLLLEPKLAILDETDSGLDIDALRIVAEGVNKLRSP-DRGILIITHY 199
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-234 |
1.21e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 82.97 E-value: 1.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNI--TRDPEYKR 78
Cdd:PRK13636 5 ILKVEELNYNYSDGT----HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdySRKGLMKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 79 AQYIGRIFQNPLLGTASNMSLEDnmmITYRKGFKWLKRSLNHKmreffRSELVQLRMGLEDRMKENLALFSGGQRQALTL 158
Cdd:PRK13636 81 RESVGMVFQDPDNQLFSASVYQD---VSFGAVNLKLPEDEVRK-----RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAI 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 159 LMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
17-207 |
1.32e-18 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 80.93 E-value: 1.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 17 NENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNI--TRDPEYKRAQYIGRIFQNP---LL 91
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLdySRKGLLERRQRVGLVFQDPddqLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 92 GTA---------SNMSLEDNmmityrkgfkwlkrslnhKMREFFRSELVQLRM-GLEDRMKEnlaLFSGGQRQALTLLMM 161
Cdd:TIGR01166 83 AADvdqdvafgpLNLGLSEA------------------EVERRVREALTAVGAsGLRERPTH---CLSGGEKKRVAIAGA 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2046106881 162 VLSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKLTAMMITHN 207
Cdd:TIGR01166 142 VAMRPDVLLLDEPTAGLDPAGREQMLAILRR-LRAEGMTVVISTHD 186
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
27-222 |
1.46e-18 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 82.07 E-value: 1.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 27 LKVNEGDF-----VTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYIGRIFQnpLLgtasnmsled 101
Cdd:cd03237 15 LEVEGGSIsesevIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD--LL---------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 102 nmmityrkgFKWLKRSLNHKmreFFRSELVQlRMGLEDRMKENLALFSGGQRQ--ALTLlmmVLSRP-DLILLDEHTAAL 178
Cdd:cd03237 83 ---------SSITKDFYTHP---YFKTEIAK-PLQIEQILDREVPELSGGELQrvAIAA---CLSKDaDIYLLDEPSAYL 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2046106881 179 DPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMD 222
Cdd:cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFE 190
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-233 |
1.71e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 82.48 E-value: 1.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTvnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:PRK13647 5 IEVEDLHFRYKDGT----KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLGTASNMSLED------NMMITyrkgfkwlKRSLNHKMREFFRSelvqLRM-GLEDRMKENLALfsgGQRQ 154
Cdd:PRK13647 81 VGLVFQDPDDQVFSSTVWDDvafgpvNMGLD--------KDEVERRVEEALKA----VRMwDFRDKPPYHLSY---GQKK 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGE 233
Cdd:PRK13647 146 RVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK-TVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-227 |
2.33e-18 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 81.51 E-value: 2.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNItRDPEYK--RA 79
Cdd:cd03251 1 VEFKNVTFRYPG---DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV-RDYTLAslRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 QyIGRIFQNPLLgtaSNMSLEDNmmITYRKG-------FKWLKRSLNHkmrEFFRSelvqLRMGLEDRMKENLALFSGGQ 152
Cdd:cd03251 77 Q-IGLVSQDVFL---FNDTVAEN--IAYGRPgatreevEEAARAANAH---EFIME----LPEGYDTVIGERGVKLSGGQ 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 153 RQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMShAIEYGNRLLMMDKGEII 227
Cdd:cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNR--TTFVIAHRLS-TIENADRIVVLEDGKIV 215
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
21-224 |
4.89e-18 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 82.08 E-value: 4.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKS-TLFNLIA-----GTITptvGSIHLNDRNITRDPEYK----RAQYIGRIFQNPL 90
Cdd:PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSqTAFALMGllaanGRIG---GSATFNGREILNLPEKElnklRAEQISMIFQDPM 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 91 LGTASNMSLEDNMM--ITYRKGFKwlkrslnhKMREFFRSelvqLRMgLE--------DRMKENLALFSGGQRQALTLLM 160
Cdd:PRK09473 108 TSLNPYMRVGEQLMevLMLHKGMS--------KAEAFEES----VRM-LDavkmpearKRMKMYPHEFSGGMRQRVMIAM 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2046106881 161 MVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKG 224
Cdd:PRK09473 175 ALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAG 238
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-227 |
7.44e-18 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 79.38 E-value: 7.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:cd03369 7 IEVENLSVRYAP---DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLL--GTA-SNMSLEDnmmityrkgfkwlkrslnhkmreffRSELVQLRMGLedRMKENLALFSGGQRQALTL 158
Cdd:cd03369 84 LTIIPQDPTLfsGTIrSNLDPFD-------------------------EYSDEEIYGAL--RVSEGGLNLSQGQRQLLCL 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 159 LMMVLSRPDLILLDEHTAALDPKNAAivleLTNKFIQE--YKLTAMMITHNMSHAIEYgNRLLMMDKGEII 227
Cdd:cd03369 137 ARALLKRPRVLVLDEATASIDYATDA----LIQKTIREefTNSTILTIAHRLRTIIDY-DKILVMDAGEVK 202
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-189 |
9.18e-18 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 82.37 E-value: 9.18e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFnqGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNIT-RDPEYKRA 79
Cdd:COG1129 4 LLEMRGISKSF--GGV---KALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRfRSPRDAQA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 QYIGRIFQNPLLgtASNMSLEDNMMITY---RKGF-KWlkRSLNHKMREFFRselvqlRMGLEDRMKENLALFSGGQRQa 155
Cdd:COG1129 79 AGIAIIHQELNL--VPNLSVAENIFLGReprRGGLiDW--RAMRRRARELLA------RLGLDIDPDTPVGDLSVAQQQ- 147
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2046106881 156 ltllmMV-----LSR-PDLILLDEHTAALDPKNAAIVLEL 189
Cdd:COG1129 148 -----LVeiaraLSRdARVLILDEPTASLTEREVERLFRI 182
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
2-225 |
1.02e-17 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 79.05 E-value: 1.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRnitrdpeykraqy 81
Cdd:cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLgtaSNMSLEDNmmITYRKGF--KWLKR-----SLnhkmreffRSELVQLRMGLEDRMKENLALFSGGQRQ 154
Cdd:cd03250 68 IAYVSQEPWI---QNGTIREN--ILFGKPFdeERYEKvikacAL--------EPDLEILPDGDLTEIGEKGINLSGGQKQ 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAA-IVLELTNKFIQEYKlTAMMITHNMSHaIEYGNRLLMMDKGE 225
Cdd:cd03250 135 RISLARAVYSDADIYLLDDPLSAVDAHVGRhIFENCILGLLLNNK-TRILVTHQLQL-LPHADQIVVLDNGR 204
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
25-264 |
1.09e-17 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 79.88 E-value: 1.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGtITPTVGSIHLNDRNITRDPEYKRAQYigRIF----QNPLLgtasnmsle 100
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTLLARMAG-LLPGQGEILLNGRPLSDWSAAELARH--RAYlsqqQSPPF--------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 101 dnMMityrKGFKWLKRSLNHK-MREFFRSELVQL--RMGLEDRMKENLALFSGGQRQALTLLMMVL-------SRPDLIL 170
Cdd:COG4138 83 --AM----PVFQYLALHQPAGaSSEAVEQLLAQLaeALGLEDKLSRPLTQLSGGEWQRVRLAAVLLqvwptinPEGQLLL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 171 LDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEIIfeAAGEEKKALTVEKLIDKFH-Q 249
Cdd:COG4138 157 LDEPMNSLDVAQQAALDRLLRELCQQ-GITVVMSSHDLNHTLRHADRVWLLKQGKLV--ASGETAEVMTPENLSEVFGvK 233
|
250
....*....|....*
gi 2046106881 250 IRHKSFENDRTLLSE 264
Cdd:COG4138 234 FRRLEVEGHRWLIPT 248
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
4-229 |
1.12e-17 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 79.11 E-value: 1.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 4 LKNVSMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNdrnitrdpeykraqyiG 83
Cdd:cd03220 20 LKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR----------------G 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 84 RIfqNPLLGTAS----NMSLEDNmmITYRKGFKWLKRSLNHKMREF---FrSELvqlrmglEDRMKENLALFSGGQRQAL 156
Cdd:cd03220 84 RV--SSLLGLGGgfnpELTGREN--IYLNGRLLGLSRKEIDEKIDEiieF-SEL-------GDFIDLPVKTYSSGMKARL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEIIFE 229
Cdd:cd03220 152 AFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK-TVILVSHDPSSIKRLCDRALVLEKGKIRFD 223
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
2-227 |
1.18e-17 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 78.72 E-value: 1.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIfnqgtVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAG--TITPTVGSIHLNDRNITRDPEYKRA 79
Cdd:cd03217 1 LEIKDLHVS-----VGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGhpKYEVTEGEILFKGEDITDLPPEERA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 QY-IGRIFQNPllgtasnmslEDNMMItyrkgfkwlkrslnhKMREFFRSelvqLRMGledrmkenlalFSGGQRQALTL 158
Cdd:cd03217 76 RLgIFLAFQYP----------PEIPGV---------------KNADFLRY----VNEG-----------FSGGEKKRNEI 115
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 159 LMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNmSHAIEY--GNRLLMMDKGEII 227
Cdd:cd03217 116 LQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITHY-QRLLDYikPDRVHVLYDGRIV 184
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-227 |
1.68e-17 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 81.69 E-value: 1.68e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITrdpEYK---- 77
Cdd:TIGR02203 331 VEFRNVTFRYPG---RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLA---DYTlasl 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAQyIGRIFQNPLLgtaSNMSLEDNmmITYRKGFKWLKRSLNHKMREFFRSELV-QLRMGLEDRMKENLALFSGGQRQAL 156
Cdd:TIGR02203 405 RRQ-VALVSQDVVL---FNDTIANN--IAYGRTEQADRAEIERALAAAYAQDFVdKLPLGLDTPIGENGVLLSGGQRQRL 478
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMShAIEYGNRLLMMDKGEII 227
Cdd:TIGR02203 479 AIARALLKDAPILILDEATSALDNESERLVQAALERLMQGR--TTLVIAHRLS-TIEKADRIVVMDDGRIV 546
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
21-224 |
2.70e-17 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 78.97 E-value: 2.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITrDPEYKRaqyiGRIFQNPLLGTASNmsLE 100
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE-GPGAER----GVVFQNEGLLPWRN--VQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 101 DNMmityrkGFKWLKRSLNHKMREFFRSELVQlRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDP 180
Cdd:PRK11248 89 DNV------AFGLQLAGVEKMQRLEIAHQMLK-KVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2046106881 181 KNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKG 224
Cdd:PRK11248 162 FTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-224 |
3.99e-17 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 80.52 E-value: 3.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnENQAISTINLKVNEGDFVTVIGSNGAGKS-TLFNLIAGTITPTV----GSIHLNDRNITRDPE 75
Cdd:PRK15134 5 LLAIENLSVAFRQQQT-VRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPPVvypsGDIRFHGESLLHASE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 76 YK----RAQYIGRIFQNPLLGTASNMSLEdnmmityrkgfKWLKR--SLNHKMR-EFFRSELVQL--RMGLED---RMKE 143
Cdd:PRK15134 84 QTlrgvRGNKIAMIFQEPMVSLNPLHTLE-----------KQLYEvlSLHRGMRrEAARGEILNCldRVGIRQaakRLTD 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 144 NLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDK 223
Cdd:PRK15134 153 YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232
|
.
gi 2046106881 224 G 224
Cdd:PRK15134 233 G 233
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
15-227 |
7.19e-17 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 78.76 E-value: 7.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 15 TVNENQAISTINLKVNE---GDFVTVI-GSNGAGKSTLFNLIAGTITPTVGSIHLNDR-------NITRDPEYKRaqyIG 83
Cdd:PRK11144 3 ELNFKQQLGDLCLTVNLtlpAQGITAIfGRSGAGKTSLINAISGLTRPQKGRIVLNGRvlfdaekGICLPPEKRR---IG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 84 RIFQNPLLgtASNMSLEDNmmityrkgfkwLKRSLNHKMREFFrSELVQLrMGLEDRMKENLALFSGGQRQALTLLMMVL 163
Cdd:PRK11144 80 YVFQDARL--FPHYKVRGN-----------LRYGMAKSMVAQF-DKIVAL-LGIEPLLDRYPGSLSGGEKQRVAIGRALL 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2046106881 164 SRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVK 208
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
20-231 |
7.32e-17 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 77.80 E-value: 7.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 20 QAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRA--QYIGRIFQNPLlgTASN 96
Cdd:PRK10419 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKlNRAQRKAfrRDIQMVFQDSI--SAVN 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 97 MslednmmityRKGFKWLKR-------SLNHKMREFFRSEL---VQLRMGLEDRMKENLalfSGGQRQALTLLMMVLSRP 166
Cdd:PRK10419 104 P----------RKTVREIIReplrhllSLDKAERLARASEMlraVDLDDSVLDKRPPQL---SGGQLQRVCLARALAVEP 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 167 DLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAA 231
Cdd:PRK10419 171 KLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-234 |
1.42e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 76.88 E-value: 1.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTL---FN-LIAGTITPTV-GSIHLNDRNITRDPEY 76
Cdd:PRK14247 4 IEIRDLKVSFGQVEV-----LDGVNLEIPDNTITALMGPSGSGKSTLlrvFNrLIELYPEARVsGEVYLDGQDIFKMDVI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 77 KRAQYIGRIFQ--NPLlgtaSNMSLEDNMMItyrkGFKwLKRSLNHKMREFFRS----ELVQLRMGLEDRMKENLALFSG 150
Cdd:PRK14247 79 ELRRRVQMVFQipNPI----PNLSIFENVAL----GLK-LNRLVKSKKELQERVrwalEKAQLWDEVKDRLDAPAGKLSG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 151 GQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEykLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEA 230
Cdd:PRK14247 150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
....
gi 2046106881 231 AGEE 234
Cdd:PRK14247 228 PTRE 231
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-227 |
1.58e-16 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 78.57 E-value: 1.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKS----TLFNLIAGTITPTVGSIHLNDRNITRDPEY 76
Cdd:COG4172 6 LLSVEDLSVAFGQGG-GTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLSER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 77 K----RAQYIGRIFQNPLlgTASN--MSLEDNMMITYRkgfkwLKRSLNhkmREFFRSELVQL--RMGL---EDRMK--- 142
Cdd:COG4172 85 ElrriRGNRIAMIFQEPM--TSLNplHTIGKQIAEVLR-----LHRGLS---GAAARARALELleRVGIpdpERRLDayp 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 143 -EnlalFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMM 221
Cdd:COG4172 155 hQ----LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVM 230
|
....*.
gi 2046106881 222 DKGEII 227
Cdd:COG4172 231 RQGEIV 236
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
29-263 |
1.59e-16 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 76.51 E-value: 1.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 29 VNEGDFVTVIGSNGAGKSTLFNLIAGTiTPTVGSIHLNDRNITRDPEYKRAQYigRIF----QNPllgtASNMSLednmm 104
Cdd:PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARH--RAYlsqqQTP----PFAMPV----- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 105 ityrkgFKWLKRSLNHKMRE-FFRSELVQL--RMGLEDRMKENLALFSGGQRQALTLLMMVL-----SRPD--LILLDEH 174
Cdd:PRK03695 87 ------FQYLTLHQPDKTRTeAVASALNEVaeALGLDDKLGRSVNQLSGGEWQRVRLAAVVLqvwpdINPAgqLLLLDEP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 175 TAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEIIfeAAGEEKKALTVEKLIDKFH-QIRHK 253
Cdd:PRK03695 161 MNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLL--ASGRRDEVLTPENLAQVFGvNFRRL 237
|
250
....*....|
gi 2046106881 254 SFENDRTLLS 263
Cdd:PRK03695 238 DVEGHPMLIS 247
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
25-222 |
1.73e-16 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 75.97 E-value: 1.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYK---RAQYIGRIFQN----PLLGTASN 96
Cdd:PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQmDEEARaklRAKHVGFVFQSfmliPTLNALEN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 97 MSLEdnmmityrkgfKWLKRSLNHKMREFFRSELVQLrmGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTA 176
Cdd:PRK10584 109 VELP-----------ALLRGESSRQSRNGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTG 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2046106881 177 ALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMD 222
Cdd:PRK10584 176 NLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVN 221
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
20-234 |
1.80e-16 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 76.47 E-value: 1.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 20 QAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY-IGRIFQNPLLgtASNMS 98
Cdd:PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRgIGYLPQEASI--FRRLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 99 LEDNMMITYRkgfkwLKRSLNHKMREFFRSELVQLR--MGLEDRMKENLalfSGGQRQALTLLMMVLSRPDLILLDEHTA 176
Cdd:PRK10895 95 VYDNLMAVLQ-----IRDDLSAEQREDRANELMEEFhiEHLRDSMGQSL---SGGERRRVEIARALAANPKFILLDEPFA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 177 ALDPKnAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK10895 167 GVDPI-SVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTE 223
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-247 |
1.92e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 77.43 E-value: 1.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQ--------GTVN--------ENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIH 64
Cdd:COG4586 1 IIEVENLSKTYRVyekepglkGALKglfrreyrEVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 65 LNDRNITRD-PEYKRAqyIGRIFQN--------PLLGtasnmSLEDNMMItYRKGFKWLKRSLNhkmreffrsELVQLrM 135
Cdd:COG4586 81 VLGYVPFKRrKEFARR--IGVVFGQrsqlwwdlPAID-----SFRLLKAI-YRIPDAEYKKRLD---------ELVEL-L 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 136 GLEDRMKE---NLALfsgGQRQALTLLMMVLSRPDLILLDEHTAALDP--KNAaiVLELTNKFIQEYKLTAMMITHNMSH 210
Cdd:COG4586 143 DLGELLDTpvrQLSL---GQRMRCELAAALLHRPKILFLDEPTIGLDVvsKEA--IREFLKEYNRERGTTILLTSHDMDD 217
|
250 260 270
....*....|....*....|....*....|....*..
gi 2046106881 211 AIEYGNRLLMMDKGEIIFEAageekkalTVEKLIDKF 247
Cdd:COG4586 218 IEALCDRVIVIDHGRIIYDG--------SLEELKERF 246
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
25-228 |
2.04e-16 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 75.28 E-value: 2.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAG-TITPTV-GSIHLNDRNITRDPEYKRAQYIGRifQNPLLGTasnMSLEDN 102
Cdd:cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGrRTGLGVsGEVLINGRPLDKRSFRKIIGYVPQ--DDILHPT---LTVRET 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 103 MMITyrkgfkwlkrslnhkmreffrselVQLRmGLedrmkenlalfSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKN 182
Cdd:cd03213 103 LMFA------------------------AKLR-GL-----------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2046106881 183 AAIVLELTNKFIQEYKlTAMMITHNMSHAIEYG-NRLLMMDKGEIIF 228
Cdd:cd03213 147 ALQVMSLLRRLADTGR-TIICSIHQPSSEIFELfDKLLLLSQGRVIY 192
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-227 |
2.17e-16 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 76.21 E-value: 2.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSmiFNQGTvneNQAISTINLKVNEGDFVTVIGSNGAGKSTL---FNLIAgtiTPTVGSIHL--NDRNITRDPEY 76
Cdd:PRK11124 3 IQLNGIN--CFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLlrvLNLLE---MPRSGTLNIagNHFDFSKTPSD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 77 KRA----QYIGRIFQNPLLGtaSNMSLEDNMMITYRKGFKWLKRSLNHKMREFfrseLVQLRMG-LEDRMKENLalfSGG 151
Cdd:PRK11124 75 KAIrelrRNVGMVFQQYNLW--PHLTVQQNLIEAPCRVLGLSKDQALARAEKL----LERLRLKpYADRFPLHL---SGG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 152 QRQALTL---LMMvlsRPDLILLDEHTAALDPKNAA----IVLELtnkfiQEYKLTAMMITHNMSHAIEYGNRLLMMDKG 224
Cdd:PRK11124 146 QQQRVAIaraLMM---EPQVLLFDEPTAALDPEITAqivsIIREL-----AETGITQVIVTHEVEVARKTASRVVYMENG 217
|
...
gi 2046106881 225 EII 227
Cdd:PRK11124 218 HIV 220
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-227 |
3.58e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 77.56 E-value: 3.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:PRK11160 339 LTLNNVSFTYPDQ---PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLGTAsnmSLEDNMMITyrkgfkwLKRSLNHKMREFFR----SELVQLRMGLEDRMKENLALFSGGQRQALT 157
Cdd:PRK11160 416 ISVVSQRVHLFSA---TLRDNLLLA-------APNASDEALIEVLQqvglEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 158 LLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEyKlTAMMITHNMsHAIEYGNRLLMMDKGEII 227
Cdd:PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQN-K-TVLMITHRL-TGLEQFDRICVMDNGQII 552
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
21-234 |
5.45e-16 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 75.59 E-value: 5.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKSTL---FN----LIAGTITPtvGSIHLNDRNITR---DPEYKRAQyIGRIFQNPl 90
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTIlrcFNrlndLIPGFRVE--GKVTFHGKNLYApdvDPVEVRRR-IGMVFQKP- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 91 lgTASNMSLEDNMMITYR-KGFKwlkrslnHKMREFFRSELVQ--LRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPD 167
Cdd:PRK14243 101 --NPFPKSIYDNIAYGARiNGYK-------GDMDELVERSLRQaaLWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 168 LILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMSHA--------------IEYGNR---LLMMDKGEIIFEA 230
Cdd:PRK14243 172 VILMDEPCSALDPISTLRIEELMHELKEQY--TIIIVTHNMQQAarvsdmtaffnvelTEGGGRygyLVEFDRTEKIFNS 249
|
....
gi 2046106881 231 AGEE 234
Cdd:PRK14243 250 PQQQ 253
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
25-227 |
7.50e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 76.81 E-value: 7.50e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTItPTVGSIHLNDRNITR-DPEYKRaQYIGRIFQNPLL--GTasnmsLED 101
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRElDPESWR-KHLSWVGQNPQLphGT-----LRD 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 102 NMMityrkgfkwLKRS------LNHKMREFFRSELV-QLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEH 174
Cdd:PRK11174 442 NVL---------LGNPdasdeqLQQALENAWVSEFLpLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEP 512
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 175 TAALDPKNAAIVLELTNKFIQeyKLTAMMITHNMSHAIEYgNRLLMMDKGEII 227
Cdd:PRK11174 513 TASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQW-DQIWVMQDGQIV 562
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-206 |
1.07e-15 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 76.26 E-value: 1.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDrNITrdpeykraq 80
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDD-----LSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGE-TVK--------- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNpllgtasNMSLEDNMMItyrkgFKWLKRsLNHKMREffrSELVQL--RMGL-EDRMKENLALFSGGQRQALT 157
Cdd:COG0488 380 -IGYFDQH-------QEELDPDKTV-----LDELRD-GAPGGTE---QEVRGYlgRFLFsGDDAFKPVGVLSGGEKARLA 442
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2046106881 158 LLMMVLSRPDLILLDEHTAALDPKnaaiVLELTNKFIQEYKLTAMMITH 206
Cdd:COG0488 443 LAKLLLSPPNVLLLDEPTNHLDIE----TLEALEEALDDFPGTVLLVSH 487
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
2-227 |
1.29e-15 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 76.15 E-value: 1.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNqgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIH---LNDRNITRdpEYKR 78
Cdd:PRK13657 335 VEFDDVSFSYD----NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILidgTDIRTVTR--ASLR 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 79 aQYIGRIFQNPLLgtaSNMSLEDNMMI-----TYRKGFKWLKRSLNHKMREffRSElvqlrMGLEDRMKENLALFSGGQR 153
Cdd:PRK13657 409 -RNIAVVFQDAGL---FNRSIEDNIRVgrpdaTDEEMRAAAERAQAHDFIE--RKP-----DGYDTVVGERGRQLSGGER 477
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 154 QALTLLMMVLSRPDLILLDEHTAALDPK-----NAAIVLELTNKfiqeyklTAMMITHNMShAIEYGNRLLMMDKGEII 227
Cdd:PRK13657 478 QRLAIARALLKDPPILILDEATSALDVEteakvKAALDELMKGR-------TTFIIAHRLS-TVRNADRILVFDNGRVV 548
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-234 |
1.38e-15 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 74.28 E-value: 1.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:PRK11231 2 TLRTENLTVGYGTKRI-----LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIGRIFQNPLlgtasnmSLEDnmmITYRkgfkwlkrslnhKMREFFRSELVQL--RMGLEDRMKENLAL----------- 147
Cdd:PRK11231 77 RLALLPQHHL-------TPEG---ITVR------------ELVAYGRSPWLSLwgRLSAEDNARVNQAMeqtrinhladr 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 148 ----FSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDK 223
Cdd:PRK11231 135 rltdLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK-TVVTVLHDLNQASRYCDHLVVLAN 213
|
250
....*....|.
gi 2046106881 224 GEIIFEAAGEE 234
Cdd:PRK11231 214 GHVMAQGTPEE 224
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-234 |
1.56e-15 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 74.84 E-value: 1.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQy 81
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDG-----LSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLGtaSNMSLEDNMMITYRK-GFKWLK-RSLNHKMREFFRselvqlrmgLEDRMKENLALFSGGQRQALTLL 159
Cdd:PRK13537 82 VGVVPQFDNLD--PDFTVRENLLVFGRYfGLSAAAaRALVPPLLEFAK---------LENKADAKVGELSGGMKRRLTLA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 160 MMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK-TILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
20-209 |
1.68e-15 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 74.77 E-value: 1.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 20 QAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYigR-----IFQNPLlgta 94
Cdd:COG4608 32 KAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRPL--RrrmqmVFQDPY---- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 95 snmslednmmityrkgfkwlkRSLNHKMR------EFFRSELVQLRMGLEDRMKENLAL--------------FSGGQRQ 154
Cdd:COG4608 106 ---------------------ASLNPRMTvgdiiaEPLRIHGLASKAERRERVAELLELvglrpehadrypheFSGGQRQ 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 155 ------ALTLlmmvlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMS 209
Cdd:COG4608 165 rigiarALAL------NPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLS 219
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
30-234 |
1.80e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 75.85 E-value: 1.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 30 NEGDFVTVIGSNGAGKSTLFNLIAGTITPTV---GSIHLNDRNITRDPEYKRAQYIGRifQNPLLGTasnMSLEDNMMIT 106
Cdd:TIGR00955 49 KPGELLAVMGSSGAGKTTLMNALAFRSPKGVkgsGSVLLNGMPIDAKEMRAISAYVQQ--DDLFIPT---LTVREHLMFQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 107 YRkgFKwLKRSLNHKMREFFRSELVQ---------LRMGLEDRMKEnlalFSGGQRQALTLLMMVLSRPDLILLDEHTAA 177
Cdd:TIGR00955 124 AH--LR-MPRRVTKKEKRERVDEVLQalglrkcanTRIGVPGRVKG----LSGGERKRLAFASELLTDPPLLFCDEPTSG 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 178 LDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
25-226 |
2.87e-15 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 75.17 E-value: 2.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEyKRAQYIGRIFQNPLL--GT-ASNMS-L 99
Cdd:COG4618 351 VSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQwDRE-ELGRHIGYLPQDVELfdGTiAENIArF 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 100 EDnmmITYRKGFKWLKRSLNHKMreffrseLVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALD 179
Cdd:COG4618 430 GD---ADPEKVVAAAKLAGVHEM-------ILRLPDGYDTRIGEGGARLSGGQRQRIGLARALYGDPRLVVLDEPNSNLD 499
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2046106881 180 PK-----NAAIvleltnKFIQEYKLTAMMITHNMShAIEYGNRLLMMDKGEI 226
Cdd:COG4618 500 DEgeaalAAAI------RALKARGATVVVITHRPS-LLAAVDKLLVLRDGRV 544
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-224 |
4.21e-15 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 74.44 E-value: 4.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFnqGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRA 79
Cdd:PRK09700 5 YISMAGIGKSF--GPV---HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKlDHKLAAQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 QYIGRIFQNplLGTASNMSLEDNMMITYRKGFKWLKRSL--NHKMREffRSELVQLRMGLEDRMKENLALFSGGQRQALT 157
Cdd:PRK09700 80 LGIGIIYQE--LSVIDELTVLENLYIGRHLTKKVCGVNIidWREMRV--RAAMMLLRVGLKVDLDEKVANLSISHKQMLE 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 158 LLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKG 224
Cdd:PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT-AIVYISHKLAEIRRICDRYTVMKDG 221
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-227 |
6.88e-15 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 71.98 E-value: 6.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVsmifnQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAG--TITPTVGSIHLNDRNITR-DPEYK 77
Cdd:CHL00131 7 ILEIKNL-----HASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpAYKILEGDILFKGESILDlEPEER 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAQYIGRIFQNPLlgTASNMSLEDNMMITYRKGFKWLKRSLNHKMrEFF-----RSELVQLRMGLEDR-MKENlalFSGG 151
Cdd:CHL00131 82 AHLGIFLAFQYPI--EIPGVSNADFLRLAYNSKRKFQGLPELDPL-EFLeiineKLKLVGMDPSFLSRnVNEG---FSGG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 152 QRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHnmshaieYgNRLL---------MMD 222
Cdd:CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN-SIILITH-------Y-QRLLdyikpdyvhVMQ 226
|
....*
gi 2046106881 223 KGEII 227
Cdd:CHL00131 227 NGKII 231
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-227 |
7.15e-15 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 73.90 E-value: 7.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFnQGTvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITrdpEYK---- 77
Cdd:PRK11176 342 IEFRNVTFTY-PGK--EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLR---DYTlasl 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAQyIGRIFQNPLLgtaSNMSLEDNmmITYRKGFKWLKRSLNHKMREFFRSELV-QLRMGLEDRMKENLALFSGGQRQAL 156
Cdd:PRK11176 416 RNQ-VALVSQNVHL---FNDTIANN--IAYARTEQYSREQIEEAARMAYAMDFInKMDNGLDTVIGENGVLLSGGQRQRI 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKlTAMMITHNMShAIEYGNRLLMMDKGEII 227
Cdd:PRK11176 490 AIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNR-TSLVIAHRLS-TIEKADEILVVEDGEIV 557
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-233 |
7.76e-15 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 71.44 E-value: 7.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR----DPEY 76
Cdd:PRK10908 1 MIRFEHVSKAYLGG----RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRlknrEVPF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 77 KRAQyIGRIFQNPLLgtASNMSLEDNMMITYrkgfkWLKRSLNHKMREffRSELVQLRMGLEDRMKENLALFSGGQRQAL 156
Cdd:PRK10908 77 LRRQ-IGMIFQDHHL--LMDRTVYDNVAIPL-----IIAGASGDDIRR--RVSAALDKVGLLDKAKNFPIQLSGGEQQRV 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFiQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGE 233
Cdd:PRK10908 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF-NRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVGGE 222
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-229 |
8.20e-15 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 72.94 E-value: 8.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQy 81
Cdd:PRK13536 42 IDLAGVSKSYGDKAV-----VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR- 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQnpllgtASNMSLE----DNMMItYRKGFKWLKRSLNH---KMREFFRselvqlrmgLEDRMKENLALFSGGQRQ 154
Cdd:PRK13536 116 IGVVPQ------FDNLDLEftvrENLLV-FGRYFGMSTREIEAvipSLLEFAR---------LESKADARVSDLSGGMKR 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEIIFE 229
Cdd:PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK-TILLTTHFMEEAERLCDRLCVLEAGRKIAE 253
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
32-227 |
9.54e-15 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 71.88 E-value: 9.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 32 GDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRN-ITRD----PEYKRAQYI----GRIFQNPLLGTASNMSLEDN 102
Cdd:PRK11701 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDgQLRDlyalSEAERRRLLrtewGFVHQHPRDGLRMQVSAGGN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 103 -----MMITYR-------KGFKWLKRslnhkmreffrselVQLRmglEDRMKENLALFSGGQRQALTLLMMVLSRPDLIL 170
Cdd:PRK11701 112 igerlMAVGARhygdiraTAGDWLER--------------VEID---AARIDDLPTTFSGGMQQRLQIARNLVTHPRLVF 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2046106881 171 LDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:PRK11701 175 MDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
17-189 |
1.26e-14 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 70.47 E-value: 1.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 17 NENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRD-PEYKRA-QYIGRifqnpLLGTA 94
Cdd:TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQrDEPHENiLYLGH-----LPGLK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 95 SNMSLEDNMmityrkgfKWLKRSLNHKMREFFRS-ELVQLRmGLEDRMKENLalfSGGQRQALTLLMMVLSRPDLILLDE 173
Cdd:TIGR01189 86 PELSALENL--------HFWAAIHGGAQRTIEDAlAAVGLT-GFEDLPAAQL---SAGQQRRLALARLWLSRRPLWILDE 153
|
170
....*....|....*.
gi 2046106881 174 HTAALDPKNAAIVLEL 189
Cdd:TIGR01189 154 PTTALDKAGVALLAGL 169
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-239 |
1.38e-14 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 73.22 E-value: 1.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNI-TRDPE---Y 76
Cdd:PRK10535 4 LLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVaTLDADalaQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 77 KRAQYIGRIFQNPLLgtASNMSLEDNMMITYrkgfkwLKRSLNHKMREFFRSELVQlRMGLEDRMKENLALFSGGQRQAL 156
Cdd:PRK10535 83 LRREHFGFIFQRYHL--LSHLTAAQNVEVPA------VYAGLERKQRLLRAQELLQ-RLGLEDRVEYQPSQLSGGQQQRV 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 157 TLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTnKFIQEYKLTAMMITHNMSHAIEyGNRLLMMDKGEIIFEAAGEEKK 236
Cdd:PRK10535 154 SIARALMNGGQVILADEPTGALDSHSGEEVMAIL-HQLRDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIVRNPPAQEKV 231
|
...
gi 2046106881 237 ALT 239
Cdd:PRK10535 232 NVA 234
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
25-222 |
2.15e-14 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 70.61 E-value: 2.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRA----QYIGRIFQ-NPLLGTASnmSL 99
Cdd:PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAelrnQKLGFIYQfHHLLPDFT--AL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 100 EDNMMITYRKGFKwlKRSLNHKMREFFRSelvqlrMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALD 179
Cdd:PRK11629 106 ENVAMPLLIGKKK--PAEINSRALEMLAA------VGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2046106881 180 PKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMD 222
Cdd:PRK11629 178 ARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRD 220
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
20-234 |
2.40e-14 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 71.70 E-value: 2.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 20 QAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTIT-P---TVGSIHLNDRNITRDPEYKRAQYIGR----IFQNPLl 91
Cdd:PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDyPgrvMAEKLEFNGQDLQRISEKERRNLVGAevamIFQDPM- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 92 gTASNMSlednmmitYRKGFKWLK-----RSLNHKMREFFRSELVQLrMGLED---RMKENLALFSGGQRQALTLLMMVL 163
Cdd:PRK11022 100 -TSLNPC--------YTVGFQIMEaikvhQGGNKKTRRQRAIDLLNQ-VGIPDpasRLDVYPHQLSGGMSQRVMIAMAIA 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 164 SRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK11022 170 CRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-227 |
4.20e-14 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 71.37 E-value: 4.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIF---NQGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLN------DRNIT 71
Cdd:TIGR03269 279 IIKVRNVSKRYisvDRGVV---KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvgdewvDMTKP 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 72 RDPEYKRA-QYIGRIFQNPLLGTASNM--SLEDNMMITYRKGFKWLKRSLNHKMREFFRSELVQLRmgleDRMKENLalf 148
Cdd:TIGR03269 356 GPDGRGRAkRYIGILHQEYDLYPHRTVldNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEIL----DKYPDEL--- 428
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 149 SGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:TIGR03269 429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-227 |
4.35e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 69.87 E-value: 4.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQgtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTL---FN--LIAGTITPTVGSIHLNDRNITR---D 73
Cdd:PRK14267 5 IETVNLRVYYGS-----NHVIKGVDLKIPQNGVFALMGPSGCGKSTLlrtFNrlLELNEEARVEGEVRLFGRNIYSpdvD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 74 PEYKRAQyIGRIFQNPllGTASNMSLEDNMMITYR-KGFKWLKRSLNHKMREFFRSelVQLRMGLEDRMKENLALFSGGQ 152
Cdd:PRK14267 80 PIEVRRE-VGMVFQYP--NPFPHLTIYDNVAIGVKlNGLVKSKKELDERVEWALKK--AALWDEVKDRLNDYPSNLSGGQ 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 153 RQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLI 227
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
13-227 |
4.78e-14 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 71.25 E-value: 4.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 13 QGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTL----FNLIagtitPTVGSIHLNDRNITRDPE-----YKRAQYIg 83
Cdd:COG4172 293 RRTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLglalLRLI-----PSEGEIRFDGQDLDGLSRralrpLRRRMQV- 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 84 rIFQNPLlgtAS---NMSLEDnmMITyrKGFKWLKRSLNHKMREffrsELVQ---LRMGLEDRMK-----EnlalFSGGQ 152
Cdd:COG4172 367 -VFQDPF---GSlspRMTVGQ--IIA--EGLRVHGPGLSAAERR----ARVAealEEVGLDPAARhryphE----FSGGQ 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 153 RQ------ALTLlmmvlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHN------MSHaieygnRLLM 220
Cdd:COG4172 431 RQriaiarALIL------EPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDlavvraLAH------RVMV 498
|
....*..
gi 2046106881 221 MDKGEII 227
Cdd:COG4172 499 MKDGKVV 505
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
29-222 |
5.60e-14 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 71.38 E-value: 5.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 29 VNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIhlndrNITRDPEYKrAQYIgrifqnpllGTASNMSLEDnmmityr 108
Cdd:PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV-----DPELKISYK-PQYI---------KPDYDGTVED------- 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 109 kgfkWLKRSLNHKMREFFRSELVQlRMGLEDRMKENLALFSGGQRQALtLLMMVLSRP-DLILLDEHTAALDPKNAAIVL 187
Cdd:PRK13409 420 ----LLRSITDDLGSSYYKSEIIK-PLQLERLLDKNVKDLSGGELQRV-AIAACLSRDaDLYLLDEPSAHLDVEQRLAVA 493
|
170 180 190
....*....|....*....|....*....|....*
gi 2046106881 188 ELTNKFIQEYKLTAMMITHNmshaieygnrLLMMD 222
Cdd:PRK13409 494 KAIRRIAEEREATALVVDHD----------IYMID 518
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
26-227 |
6.25e-14 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 70.83 E-value: 6.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 26 NLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR--DPEYK--RAQYIGRIFQNplLGTASNMSLED 101
Cdd:PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKisDAELRevRRKKIAMVFQS--FALMPHMTVLD 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 102 NMMITYRkgfkwLKRSLNHKMREFFRSELVQLrmGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPk 181
Cdd:PRK10070 126 NTAFGME-----LAGINAEERREKALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDP- 197
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2046106881 182 naAIVLELTNKFIQ---EYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:PRK10070 198 --LIRTEMQDELVKlqaKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-234 |
6.83e-14 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 70.99 E-value: 6.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGT--ITPTVGSIHLNdrnITRDPEYKRA 79
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKN-----ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIYH---VALCEKCGYV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 QYIGRIFQN-PLLGtaSNMSLED----NMMITYRKGFK-----WLKRS-------------------LNHKMREFFRSEL 130
Cdd:TIGR03269 73 ERPSKVGEPcPVCG--GTLEPEEvdfwNLSDKLRRRIRkriaiMLQRTfalygddtvldnvlealeeIGYEGKEAVGRAV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 131 VQLRM-GLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTaMMITHNMS 209
Cdd:TIGR03269 151 DLIEMvQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGIS-MVLTSHWP 229
|
250 260
....*....|....*....|....*.
gi 2046106881 210 HAIE-YGNRLLMMDKGEIIFEAAGEE 234
Cdd:TIGR03269 230 EVIEdLSDKAIWLENGEIKEEGTPDE 255
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
2-226 |
7.78e-14 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 68.65 E-value: 7.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSmiFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRAQ 80
Cdd:cd03248 12 VKFQNVT--FAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQyEHKYLHSK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPLLgtaSNMSLEDNmmITY---RKGFKWLKRSLNHKMREFFRSELVQlrmGLEDRMKENLALFSGGQRQALT 157
Cdd:cd03248 90 -VSLVGQEPVL---FARSLQDN--IAYglqSCSFECVKEAAQKAHAHSFISELAS---GYDTEVGEKGSQLSGGQKQRVA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 158 LLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYklTAMMITHNMShAIEYGNRLLMMDKGEI 226
Cdd:cd03248 161 IARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--TVLVIAHRLS-TVERADQILVLDGGRI 226
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
21-227 |
1.04e-13 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 70.54 E-value: 1.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYIGRIFQNPLLGTASNMsle 100
Cdd:TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSIL--- 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 101 DNMMITYRKGFKWLKRSLNHKMREFfRSELVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDp 180
Cdd:TIGR01193 566 ENLLLGAKENVSQDEIWAACEIAEI-KDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD- 643
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2046106881 181 knaaIVLE--LTNKFIQEYKLTAMMITHNMSHAiEYGNRLLMMDKGEII 227
Cdd:TIGR01193 644 ----TITEkkIVNNLLNLQDKTIIFVAHRLSVA-KQSDKIIVLDHGKII 687
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
25-226 |
1.73e-13 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 68.29 E-value: 1.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLN--------DRNITRDP------EYKRAQyIGRIFQNPL 90
Cdd:COG4598 27 VSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGgeeirlkpDRDGELVPadrrqlQRIRTR-LGMVFQSFN 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 91 LGtaSNMSLEDNMM---ITYrkgfkwLKRSlnhkmreffRSELVQ------LRMGLEDRMKENLALFSGGQRQ----ALT 157
Cdd:COG4598 106 LW--SHMTVLENVIeapVHV------LGRP---------KAEAIEraeallAKVGLADKRDAYPAHLSGGQQQraaiARA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 158 LLMmvlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:COG4598 169 LAM----EPEVMLFDEPTSALDPELVGEVLKVMRDLAEEGR-TMLVVTHEMGFARDVSSHVVFLHQGRI 232
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-208 |
1.88e-13 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 68.22 E-value: 1.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHlndrnitRDPEYKraq 80
Cdd:PRK09544 4 LVSLENVSVSFGQRRV-----LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK-------RNGKLR--- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPLLGTASNMSLEDNMMItyRKGFK------WLKRslnhkmreffrselVQLRMGLEDRMKEnlalFSGGQRQ 154
Cdd:PRK09544 69 -IGYVPQKLYLDTTLPLTVNRFLRL--RPGTKkedilpALKR--------------VQAGHLIDAPMQK----LSGGETQ 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNM 208
Cdd:PRK09544 128 RVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
2-226 |
1.88e-13 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 69.75 E-value: 1.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSmiFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRAQ 80
Cdd:TIGR00958 479 IEFQDVS--FSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQyDHHYLHRQ 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPLLgtaSNMSLEDNmmITYRKGFKWLKRSLNHKMREFFRSELVQLRMGLEDRMKENLALFSGGQRQALTLLM 160
Cdd:TIGR00958 557 -VALVGQEPVL---FSGSVREN--IAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 161 MVLSRPDLILLDEHTAALDPKNAAIVLELTNKfiqeYKLTAMMITHNMsHAIEYGNRLLMMDKGEI 226
Cdd:TIGR00958 631 ALVRKPRVLILDEATSALDAECEQLLQESRSR----ASRTVLLIAHRL-STVERADQILVLKKGSV 691
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
25-226 |
2.14e-13 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 69.30 E-value: 2.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYkRAQYIGRIFQNPLL--GT-ASNMS-L 99
Cdd:TIGR01842 337 ISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQwDRET-FGKHIGYLPQDVELfpGTvAENIArF 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 100 EDNmmITYRKGFKWLKRSLNHKMreffrseLVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALD 179
Cdd:TIGR01842 416 GEN--ADPEKIIEAAKLAGVHEL-------ILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2046106881 180 PKNAAIVLELTnKFIQEYKLTAMMITHNMShAIEYGNRLLMMDKGEI 226
Cdd:TIGR01842 487 EEGEQALANAI-KALKARGITVVVITHRPS-LLGCVDKILVLQDGRI 531
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
36-234 |
2.50e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 68.20 E-value: 2.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 36 TVIGSNGAGKSTLF---NLIAGTIT--PTVGSIHLNDRNI--TRDP-EYKRAqyIGRIFQNPllgTASNMSLEDNMMITY 107
Cdd:PRK14271 51 SLMGPTGSGKTTFLrtlNRMNDKVSgyRYSGDVLLGGRSIfnYRDVlEFRRR--VGMLFQRP---NPFPMSIMDNVLAGV 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 108 RKgfkwlkrslnHKM--REFFRSeLVQLRM---GLEDRMKENLA----LFSGGQRQALTLLMMVLSRPDLILLDEHTAAL 178
Cdd:PRK14271 126 RA----------HKLvpRKEFRG-VAQARLtevGLWDAVKDRLSdspfRLSGGQQQLLCLARTLAVNPEVLLLDEPTSAL 194
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 179 DPKNAAIVLELTNKFIQeyKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK14271 195 DPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
2-234 |
3.02e-13 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 67.26 E-value: 3.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGtvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRAQ 80
Cdd:cd03253 1 IEFENVTFAYDPG----RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvTLDSLRRA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yIGRIFQNPLLgtaSNMSLEDNmmITYRKgfkwLKRSlNHKMREFFRS-----ELVQLRMGLEDRMKENLALFSGGQRQA 155
Cdd:cd03253 77 -IGVVPQDTVL---FNDTIGYN--IRYGR----PDAT-DEEVIEAAKAaqihdKIMRFPDGYDTIVGERGLKLSGGEKQR 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 156 LTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQeyKLTAMMITHNMShAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLS-TIVNADKIIVLKDGRIVERGTHEE 221
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-206 |
3.15e-13 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 65.16 E-value: 3.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNitrdpeykraqY 81
Cdd:cd03221 1 IELENLSKTYGGKLL-----LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-----------K 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQnpllgtasnmslednmmityrkgfkwlkrslnhkmreffrselvqlrmgledrmkenlalFSGGQRQALTLLMM 161
Cdd:cd03221 65 IGYFEQ------------------------------------------------------------LSGGEKMRLALAKL 84
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2046106881 162 VLSRPDLILLDEHTAALDPKNaaivLELTNKFIQEYKLTAMMITH 206
Cdd:cd03221 85 LLENPNLLLLDEPTNHLDLES----IEALEEALKEYPGTVILVSH 125
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
32-234 |
4.41e-13 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 67.12 E-value: 4.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 32 GDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYIGRIFQNplLGTASNMSLEDNMMITYrkgF 111
Cdd:PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQ--LPAAEGMTVRELVAIGR---Y 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 112 KWlKRSLNhkmreffrselvqlRMGLEDRMK--ENLAL-------------FSGGQRQALTLLMMVLSRPDLILLDEHTA 176
Cdd:PRK10575 112 PW-HGALG--------------RFGAADREKveEAISLvglkplahrlvdsLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 177 ALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PRK10575 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-226 |
4.72e-13 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 67.95 E-value: 4.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNIT------RDp 74
Cdd:PRK11650 3 GLKLQAVRKSYDGKT----QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNelepadRD- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 75 eykraqyIGRIFQN----PllgtasNMSLEDNMmiTYrkGFKwlkrslNHKMREFFRSELVQ-----LRMG-LEDRMKEN 144
Cdd:PRK11650 78 -------IAMVFQNyalyP------HMSVRENM--AY--GLK------IRGMPKAEIEERVAeaariLELEpLLDRKPRE 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 145 LalfSGGQRQALTLLMMVLSRPDLILLDEHTAALDPK-NAAIVLELtNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDK 223
Cdd:PRK11650 135 L---SGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKlRVQMRLEI-QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNG 210
|
...
gi 2046106881 224 GEI 226
Cdd:PRK11650 211 GVA 213
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
16-229 |
5.74e-13 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 66.52 E-value: 5.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 16 VNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAG--TITPTVGSIHLNDRNITRDPEYKRAQ---YIGriFQNPL 90
Cdd:TIGR01978 10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGhpSYEVTSGTILFKGQDLLELEPDERARaglFLA--FQYPE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 91 LGTASNMSLednmmityrkgfkWLKRSLNHKMREffRSELVQLRMGLEDRMKENLAL---------------FSGGQRQA 155
Cdd:TIGR01978 88 EIPGVSNLE-------------FLRSALNARRSA--RGEEPLDLLDFEKLLKEKLALldmdeeflnrsvnegFSGGEKKR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 156 LTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTaMMITHNmSHAIEY--GNRLLMMDKGEIIFE 229
Cdd:TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSF-LIITHY-QRLLNYikPDYVHVLLDGRIVKS 226
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
13-209 |
6.49e-13 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 67.30 E-value: 6.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 13 QGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRA--QYIGRIFQNP 89
Cdd:PRK11308 25 ERLV---KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKaDPEAQKLlrQKIQIVFQNP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 90 LlgtAS-------NMSLEDNMMItyrkgfkwlkrslNHKMREFFRSELVQLRM---GLE----DRMKEnlaLFSGGQRQ- 154
Cdd:PRK11308 102 Y---GSlnprkkvGQILEEPLLI-------------NTSLSAAERREKALAMMakvGLRpehyDRYPH---MFSGGQRQr 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 155 -ALTLLMMVlsRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMS 209
Cdd:PRK11308 163 iAIARALML--DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS 216
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-227 |
6.78e-13 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 66.74 E-value: 6.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGT----VNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEY 76
Cdd:PRK15112 4 LLEVRNLSKTFRYRTgwfrRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 77 KRAQYIGRIFQNPllgtasNMSLEDNMMITYRKGFKW-LKRSLNHKMREffRSELVQLRMG--LEDRMKENLALFSGGQR 153
Cdd:PRK15112 84 YRSQRIRMIFQDP------STSLNPRQRISQILDFPLrLNTDLEPEQRE--KQIIETLRQVglLPDHASYYPHMLAPGQK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2046106881 154 QALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:PRK15112 156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
21-226 |
1.01e-12 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 67.73 E-value: 1.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRaQYIGRIFQNPLLgtASNMSLE 100
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR-QSLGMCPQHNIL--FHHLTVA 1021
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 101 DNMMITYR-KGFKWLKRSLnhkmreffRSELVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALD 179
Cdd:TIGR01257 1022 EHILFYAQlKGRSWEEAQL--------EMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVD 1093
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2046106881 180 PKNAAIVLELTNKFiqEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:TIGR01257 1094 PYSRRSIWDLLLKY--RSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-227 |
2.02e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 65.45 E-value: 2.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 16 VNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDR------NITRDPEYKRAQYIGRIFQNP 89
Cdd:PRK14246 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKvlyfgkDIFQIDAIKLRKEVGMVFQQP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 90 llGTASNMSLEDNMMITYRKGFKWLKRSLNHKMREFFRSelVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLI 169
Cdd:PRK14246 100 --NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRK--VGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 170 LLDEHTAALDPKNAAIVLELTNKFIQEykLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:PRK14246 176 LMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELV 231
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
25-188 |
2.46e-12 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 64.05 E-value: 2.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRA-QYIGRifqnpLLGTASNMSLEDN 102
Cdd:PRK13538 20 LSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRqRDEYHQDlLYLGH-----QPGIKTELTALEN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 103 MmityrkgfKWLKRsLNHKMREFfrsELVQL--RMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDp 180
Cdd:PRK13538 95 L--------RFYQR-LHGPGDDE---ALWEAlaQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID- 161
|
....*...
gi 2046106881 181 KNAAIVLE 188
Cdd:PRK13538 162 KQGVARLE 169
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
2-225 |
2.78e-12 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 66.59 E-value: 2.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSmiFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYK--RA 79
Cdd:PTZ00265 383 IQFKNVR--FHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKwwRS 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 80 QyIGRIFQNPLLGTAS-------------------NMSLEDNMMITYRKGFKWLKRS-----LNHKMREFFRSELVQLRM 135
Cdd:PTZ00265 461 K-IGVVSQDPLLFSNSiknnikyslyslkdlealsNYYNEDGNDSQENKNKRNSCRAkcagdLNDMSNTTDSNELIEMRK 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 136 ------------------------GLEDRMK----ENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVL 187
Cdd:PTZ00265 540 nyqtikdsevvdvskkvlihdfvsALPDKYEtlvgSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ 619
|
250 260 270
....*....|....*....|....*....|....*...
gi 2046106881 188 ELTNKFIQEYKLTAMMITHNMShAIEYGNRLLMMDKGE 225
Cdd:PTZ00265 620 KTINNLKGNENRITIIIAHRLS-TIRYANTIFVLSNRE 656
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
4-228 |
3.23e-12 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 63.82 E-value: 3.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 4 LKNVSMIFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTV---GSIHLNdrNITRDPEYKRAQ 80
Cdd:cd03233 6 WRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVsveGDIHYN--GIPYKEFAEKYP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yigrifqnpllGTASNMSLEDNMM--ITYRKGfkwLKRSLNHKMREFFRSelvqlrmgledrmkenlalFSGGQRQALTL 158
Cdd:cd03233 83 -----------GEIIYVSEEDVHFptLTVRET---LDFALRCKGNEFVRG-------------------ISGGERKRVSI 129
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 159 LMMVLSRPDLILLDEHTAALDpknAAIVLELTNK---FIQEYKLTAMMITHNMSHAIeYG--NRLLMMDKGEIIF 228
Cdd:cd03233 130 AEALVSRASVLCWDNSTRGLD---SSTALEILKCirtMADVLKTTTFVSLYQASDEI-YDlfDKVLVLYEGRQIY 200
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
20-221 |
3.27e-12 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 65.50 E-value: 3.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 20 QAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRA--QYIGRIFQNPLLGTASN 96
Cdd:PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGmKDDEWRAvrSDIQMIFQDPLASLNPR 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 97 MSLEDNM---MITYRKgfKWLKRSLNHKMREFFRSelVQLRMGLEDRMKENlalFSGGQRQALTLLMMVLSRPDLILLDE 173
Cdd:PRK15079 115 MTIGEIIaepLRTYHP--KLSRQEVKDRVKAMMLK--VGLLPNLINRYPHE---FSGGQCQRIGIARALILEPKLIICDE 187
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2046106881 174 HTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMM 221
Cdd:PRK15079 188 PVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
23-179 |
4.54e-12 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 63.28 E-value: 4.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 23 STINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRD-PEYKRA-QYIGRifQNPLLGTasnMSLE 100
Cdd:cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQrDSIARGlLYLGH--APGIKTT---LSVL 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 101 DNMmityrkgfKWLkRSLNHKMREFFRSELVQLRmGLEDRMKENLalfSGGQRQALTLLMMVLSRPDLILLDEHTAALD 179
Cdd:cd03231 92 ENL--------RFW-HADHSDEQVEEALARVGLN-GFEDRPVAQL---SAGQQRRVALARLLLSGRPLWILDEPTTALD 157
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
8-252 |
4.82e-12 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 64.52 E-value: 4.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 8 SMIFNQGTV---NENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIhlndrNITRDPEYK--RAQYI 82
Cdd:PRK15056 6 GIVVNDVTVtwrNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI-----SILGQPTRQalQKNLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 83 GRIFQNPLLGTASNMSLEDNMMITYRKGFKWLKRSLNHKmREFFRSELVQLRMgLEDRMKEnLALFSGGQRQALTLLMMV 162
Cdd:PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD-RQIVTAALARVDM-VEFRHRQ-IGELSGGQKKRVFLARAI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 163 LSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMdKGEIIfeAAGEEKKALTVEK 242
Cdd:PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK-TMLVSTHNLGSVTEFCDYTVMV-KGTVL--ASGPTETTFTAEN 233
|
250
....*....|.
gi 2046106881 243 LIDKFHQI-RH 252
Cdd:PRK15056 234 LELAFSGVlRH 244
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-189 |
5.12e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 63.35 E-value: 5.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSG-----LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 YIG-RIFQNPLLGTASNMSLednmmityrkgfkWlkrslnhkmREFFRSELVQL-----RMGL---EDRMKENLalfSGG 151
Cdd:PRK13539 77 YLGhRNAMKPALTVAENLEF-------------W---------AAFLGGEELDIaaaleAVGLaplAHLPFGYL---SAG 131
|
170 180 190
....*....|....*....|....*....|....*...
gi 2046106881 152 QRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLEL 189
Cdd:PRK13539 132 QKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAEL 169
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-227 |
7.62e-12 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 64.74 E-value: 7.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNqgtvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:PRK10790 341 IDIDNVSFAYR----DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQG 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLGTAS---NMSLEDNmmITYRKGFKWLKRSlnhKMREFFRSelvqLRMGLEDRMKENLALFSGGQRQALTL 158
Cdd:PRK10790 417 VAMVQQDPVVLADTflaNVTLGRD--ISEEQVWQALETV---QLAELARS----LPDGLYTPLGEQGNNLSVGQKQLLAL 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 159 LMMVLSRPDLILLDEHTAALDPKnaaivlelTNKFIQEY------KLTAMMITHNMSHAIEyGNRLLMMDKGEII 227
Cdd:PRK10790 488 ARVLVQTPQILILDEATANIDSG--------TEQAIQQAlaavreHTTLVVIAHRLSTIVE-ADTILVLHRGQAV 553
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
1-221 |
1.60e-11 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 63.39 E-value: 1.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFN--QGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITP----TVGSIHLNDRNITRDP 74
Cdd:COG4170 3 LLDIRNLTIEIDtpQGRV---KAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDnwhvTADRFRWNGIDLLKLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 75 EYKRAQYIGR----IFQNPL--------LGTasnmSLEDNMMITYRKGfKWLKRslnHKMREFFRSELVQlRMGLEDR-- 140
Cdd:COG4170 80 PRERRKIIGReiamIFQEPSscldpsakIGD----QLIEAIPSWTFKG-KWWQR---FKWRKKRAIELLH-RVGIKDHkd 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 141 -MKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLL 219
Cdd:COG4170 151 iMNSYPHELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTIT 230
|
..
gi 2046106881 220 MM 221
Cdd:COG4170 231 VL 232
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
2-226 |
2.04e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 63.81 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTvneNQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQY 81
Cdd:TIGR00957 1285 VEFRNYCLRYREDL---DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLGTAS-NMSLEDnmMITYRKGFKWLKRSLNHkMREFFRSelvqLRMGLEDRMKENLALFSGGQRQALTLLM 160
Cdd:TIGR00957 1362 ITIIPQDPVLFSGSlRMNLDP--FSQYSDEEVWWALELAH-LKTFVSA----LPDKLDHECAEGGENLSVGQRQLVCLAR 1434
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2046106881 161 MVLSRPDLILLDEHTAALDpknaaivLElTNKFIQEY------KLTAMMITHNMSHAIEYgNRLLMMDKGEI 226
Cdd:TIGR00957 1435 ALLRKTKILVLDEATAAVD-------LE-TDNLIQSTirtqfeDCTVLTIAHRLNTIMDY-TRVIVLDKGEV 1497
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
22-187 |
2.19e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 61.50 E-value: 2.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 22 ISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDpeykRAQYIGRI-FQNPLLGTASNMSLE 100
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD----LCTYQKQLcFVGHRSGINPYLTLR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 101 DNMMityrkgFKWLKRSLNHKMreffrSELVQLrMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDP 180
Cdd:PRK13540 93 ENCL------YDIHFSPGAVGI-----TELCRL-FSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160
|
....*..
gi 2046106881 181 KNAAIVL 187
Cdd:PRK13540 161 LSLLTII 167
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-208 |
2.88e-11 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 62.09 E-value: 2.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSmiFNQGtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNI---TRDPEYK 77
Cdd:PRK11831 7 LVDMRGVS--FTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamSRSRLYT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAQYIGRIFQNPLLGTasNMSLEDNMMITYRKGFKwLKRSLNHKMrEFFRSELVQLRmGLEDRMKENLalfSGGQRQALT 157
Cdd:PRK11831 82 VRKRMSMLFQSGALFT--DMNVFDNVAYPLREHTQ-LPAPLLHST-VMMKLEAVGLR-GAAKLMPSEL---SGGMARRAA 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 158 LLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNM 208
Cdd:PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV 204
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
15-208 |
3.37e-11 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 62.80 E-value: 3.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 15 TVNENQAISTINLKVNEGDFVTVIGSNGAGKST----LFNLIAGTitptvGSIHLNDR---NITRD---PEYKRAQYIgr 84
Cdd:PRK15134 295 TVDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLINSQ-----GEIWFDGQplhNLNRRqllPVRHRIQVV-- 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 85 iFQNPllgtasNMSLED--NMMITYRKGFKWLKRSLNHKMREFfRSELVQLRMGLEDRMKENL-ALFSGGQRQALTLLMM 161
Cdd:PRK15134 368 -FQDP------NSSLNPrlNVLQIIEEGLRVHQPTLSAAQREQ-QVIAVMEEVGLDPETRHRYpAEFSGGQRQRIAIARA 439
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2046106881 162 VLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNM 208
Cdd:PRK15134 440 LILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
16-206 |
4.03e-11 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 61.13 E-value: 4.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 16 VNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTI--TPTVGSIHLNDRNITRDpeykrAQYIGRIFQNPLLGT 93
Cdd:COG2401 40 VVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQFGRE-----ASLIDAIGRKGDFKD 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 94 A----SNMSLEDNmmITYRKGFKWLkrslnhkmreffrselvqlrmgledrmkenlalfSGGQRQALTLLMMVLSRPDLI 169
Cdd:COG2401 115 AvellNAVGLSDA--VLWLRRFKEL----------------------------------STGQKFRFRLALLLAERPKLL 158
|
170 180 190
....*....|....*....|....*....|....*..
gi 2046106881 170 LLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITH 206
Cdd:COG2401 159 VIDEFCSHLDRQTAKRVARNLQKLARRAGITLVVATH 195
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-206 |
4.73e-10 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 58.26 E-value: 4.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMifnqgTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGT--ITPTVGSIHLNDRNITR-DPEYK 77
Cdd:PRK09580 1 MLSIKDLHV-----SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLElSPEDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 78 RAQYIGRIFQNPL-LGTASNMSLednmmityrkgfkwLKRSLNhKMREFFRSELVQlRMGLEDRMKENLAL--------- 147
Cdd:PRK09580 76 AGEGIFMAFQYPVeIPGVSNQFF--------------LQTALN-AVRSYRGQEPLD-RFDFQDLMEEKIALlkmpedllt 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 148 ------FSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKfIQEYKLTAMMITH 206
Cdd:PRK09580 140 rsvnvgFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNS-LRDGKRSFIIVTH 203
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
22-244 |
5.27e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 59.25 E-value: 5.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 22 ISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNI-TRDPEYKRAQYIGRIFQNP-----LLGtas 95
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvTRSPQDGLANGIVYISEDRkrdglVLG--- 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 96 nMSLEDNMMITYRKGFKWLKRSLNHKMREFFRSELVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHT 175
Cdd:PRK10762 345 -MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPT 423
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 176 AALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEEKkalTVEKLI 244
Cdd:PRK10762 424 RGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA---TQEKLM 488
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
17-223 |
5.60e-10 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 57.55 E-value: 5.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 17 NENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDpeyKRAQYIGRIFQNPllGTASN 96
Cdd:PRK13543 22 NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAYLGHLP--GLKAD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 97 MSLEDNMmityrkgfKWLKRSLNHKMREFFRSELVQLrmGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTA 176
Cdd:PRK13543 97 LSTLENL--------HFLCGLHGRRAKQMPGSALAIV--GLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2046106881 177 ALDPKNaaivLELTNKFIQEYKLT---AMMITHNMSHAIEYGNRLLMMDK 223
Cdd:PRK13543 167 NLDLEG----ITLVNRMISAHLRGggaALVTTHGAYAAPPVRTRMLTLEA 212
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-234 |
5.89e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 59.10 E-value: 5.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKS----TLFNLI---AGTITPTVGSIHLNDRNITRD 73
Cdd:PRK10261 12 VLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSvtalALMRLLeqaGGLVQCDKMLLRRRSRQVIEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 74 PEYKRAQY-------IGRIFQNPLLGTASNMSLEDNMMITYRkgfkwLKRSLNHK--MREFFRSeLVQLRM----GLEDR 140
Cdd:PRK10261 91 SEQSAAQMrhvrgadMAMIFQEPMTSLNPVFTVGEQIAESIR-----LHQGASREeaMVEAKRM-LDQVRIpeaqTILSR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 141 MKENLalfSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLM 220
Cdd:PRK10261 165 YPHQL---SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241
|
250
....*....|....
gi 2046106881 221 MDKGEIIFEAAGEE 234
Cdd:PRK10261 242 MYQGEAVETGSVEQ 255
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-243 |
8.55e-10 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 58.50 E-value: 8.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 3 ELKNVSMIFNQGTVnenqAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITR-DPEYKRAQY 81
Cdd:COG3845 259 EVENLSVRDDRGVP----ALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGlSPRERRRLG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPL-LGTASNMSLEDNMMIT--YRKGFK---WLKRSlnhKMREFFRsELVQ---LRM-GLEDRMKenlaLFSGG 151
Cdd:COG3845 335 VAYIPEDRLgRGLVPDMSVAENLILGryRRPPFSrggFLDRK---AIRAFAE-ELIEefdVRTpGPDTPAR----SLSGG 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 152 --QRqaltllmMVLSR-----PDLILLDEHTAALDPKNAAivleltnkFIQEyKLTAM--------MITHNMSHAIEYGN 216
Cdd:COG3845 407 nqQK-------VILARelsrdPKLLIAAQPTRGLDVGAIE--------FIHQ-RLLELrdagaavlLISEDLDEILALSD 470
|
250 260
....*....|....*....|....*..
gi 2046106881 217 RLLMMDKGEIIFEAAGEEkkaLTVEKL 243
Cdd:COG3845 471 RIAVMYEGRIVGEVPAAE---ATREEI 494
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
1-222 |
8.67e-10 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 58.61 E-value: 8.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGtITPTVGSIhlndrnITRDPEykraq 80
Cdd:TIGR00954 451 GIKFENIPLVTPNGDV----LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGE-LWPVYGGR------LTKPAK----- 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 yiGRIFQNPLLGTASNMSLEDNMMityrkgfkWLKRSLNHKMREFFRSELVQL--RMGLEDRMKENLA---------LFS 149
Cdd:TIGR00954 515 --GKLFYVPQRPYMTLGTLRDQII--------YPDSSEDMKRRGLSDKDLEQIldNVQLTHILEREGGwsavqdwmdVLS 584
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 150 GGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELtnkfIQEYKLTAMMITHNMShAIEYGNRLLMMD 222
Cdd:TIGR00954 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRL----CREFGITLFSVSHRKS-LWKYHEYLLYMD 652
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
17-228 |
2.03e-09 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 56.13 E-value: 2.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 17 NENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITP---TVGSIHLNDRNITRDPEYKRAQYIGrifQNPLLgt 93
Cdd:cd03234 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQPRKPDQFQKCVAYVR---QDDIL-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 94 ASNMSLEDNmmITYRKGFKwLKRSLNHKMREFFRSELVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDE 173
Cdd:cd03234 93 LPGLTVRET--LTYTAILR-LPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDE 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 174 HTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIF 228
Cdd:cd03234 170 PTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
17-179 |
2.08e-09 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 57.49 E-value: 2.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 17 NENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNdRNI------TRDPEYKRA-----QYIGRI 85
Cdd:PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA-KGIklgyfaQHQLEFLRAdesplQHLARL 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 86 fqnpllgtasnmslednmmityrkgfkwLKRSLNHKMREFFRSelvqlrMGLE-DRMKENLALFSGGQRQALTLLMMVLS 164
Cdd:PRK10636 402 ----------------------------APQELEQKLRDYLGG------FGFQgDKVTEETRRFSGGEKARLVLALIVWQ 447
|
170
....*....|....*
gi 2046106881 165 RPDLILLDEHTAALD 179
Cdd:PRK10636 448 RPNLLLLDEPTNHLD 462
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
15-237 |
3.84e-09 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 56.81 E-value: 3.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 15 TVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPT--VGSIHLNDRNITRdPEYKRaqyIGRIFQNPLLg 92
Cdd:PLN03211 77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNRKPTK-QILKR---TGFVTQDDIL- 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 93 tASNMSLEDNMMITyrkGFKWLKRSLNhKMREFFRSELVQLRMGL---EDRMKENLAL--FSGGQRQALTLLMMVLSRPD 167
Cdd:PLN03211 152 -YPHLTVRETLVFC---SLLRLPKSLT-KQEKILVAESVISELGLtkcENTIIGNSFIrgISGGERKRVSIAHEMLINPS 226
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 168 LILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEEKKA 237
Cdd:PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
21-247 |
7.65e-09 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 56.18 E-value: 7.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDpeykraqyIGRIFQNplLGTASNMSLE 100
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--------ISDVHQN--MGYCPQFDAI 2023
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 101 DNMMITYRKGFKWLK-RSLNHKMREFFRSELVQlRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALD 179
Cdd:TIGR01257 2024 DDLLTGREHLYLYARlRGVPAEEIEKVANWSIQ-SLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 180 PKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEiiFEAAGeekkalTVEKLIDKF 247
Cdd:TIGR01257 2103 PQARRMLWNTIVSIIREGR-AVVLTSHSMEECEALCTRLAIMVKGA--FQCLG------TIQHLKSKF 2161
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
25-227 |
9.03e-09 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 54.71 E-value: 9.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKS-----TLFNLIAGtITPTVGSIHLNDRNITrdPEYKRAQYIGRIFQNPllgtasnmsl 99
Cdd:PRK10418 22 VSLTLQRGRVLALVGGSGSGKSltcaaALGILPAG-VRQTAGRVLLDGKPVA--PCALRGRKIATIMQNP---------- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 100 ednmmityRKGFKWLkRSLNHKMREFFR-----SELVQLR-----MGLEDRmKENLALF----SGGQRQALTLLMMVLSR 165
Cdd:PRK10418 89 --------RSAFNPL-HTMHTHARETCLalgkpADDATLTaaleaVGLENA-ARVLKLYpfemSGGMLQRMMIALALLCE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2046106881 166 PDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:PRK10418 159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV 220
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
25-227 |
1.05e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 55.90 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYIGRIFQNPLLGTAsnmslednmm 104
Cdd:PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG---------- 1327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 105 iTYRkgFKwLKRSLNHKMREFFRS-ELVQLR-------MGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTA 176
Cdd:PLN03130 1328 -TVR--FN-LDPFNEHNDADLWESlERAHLKdvirrnsLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATA 1403
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 177 ALDPKNAAIVleltNKFI-QEYKLTAMM-ITHNMSHAIEyGNRLLMMDKGEII 227
Cdd:PLN03130 1404 AVDVRTDALI----QKTIrEEFKSCTMLiIAHRLNTIID-CDRILVLDAGRVV 1451
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
32-224 |
1.08e-08 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 53.79 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 32 GDFVTVIGSNGAGKSTLFNLIA-----GTITptvGSIHLNDRniTRDPEYKRaqYIGRIFQNPLLgtasnmslednmmit 106
Cdd:cd03232 33 GTLTALMGESGAGKTTLLDVLAgrktaGVIT---GEILINGR--PLDKNFQR--STGYVEQQDVH--------------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 107 yrkgfkwlkrSLNHKMREFFR-SELvqLRmGLedrmkenlalfSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAI 185
Cdd:cd03232 91 ----------SPNLTVREALRfSAL--LR-GL-----------SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYN 146
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2046106881 186 VLELTNKfIQEYKLTAMMITHNMSHAI-EYGNRLLMMDKG 224
Cdd:cd03232 147 IVRFLKK-LADSGQAILCTIHQPSASIfEKFDRLLLLKRG 185
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1-234 |
1.31e-08 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 54.81 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIF--NQGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAG----TITPTVGSIHLNDRNITRDP 74
Cdd:PRK15093 3 LLDIRNLTIEFktSDGWV---KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvtkdNWRVTADRMRFDDIDLLRLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 75 EYKRAQYIGR----IFQNP--LLGTASNMSLEDNMMI---TYrKGfKWLKRSLNHKMREFfrsELVQlRMGLEDR---MK 142
Cdd:PRK15093 80 PRERRKLVGHnvsmIFQEPqsCLDPSERVGRQLMQNIpgwTY-KG-RWWQRFGWRKRRAI---ELLH-RVGIKDHkdaMR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 143 ENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMD 222
Cdd:PRK15093 154 SFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233
|
250
....*....|..
gi 2046106881 223 KGEIIFEAAGEE 234
Cdd:PRK15093 234 CGQTVETAPSKE 245
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
29-234 |
2.08e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 54.98 E-value: 2.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 29 VNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRD--PEYKRAQYIgrIFQNPLLGTASnMSLEDNMMIT 106
Cdd:PLN03232 1259 VSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFglTDLRRVLSI--IPQSPVLFSGT-VRFNIDPFSE 1335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 107 YRKGFKWlkRSLNhkmREFFRSELVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIV 186
Cdd:PLN03232 1336 HNDADLW--EALE---RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2046106881 187 LELTNkfiQEYK-LTAMMITHNMSHAIEYgNRLLMMDKGEIIFEAAGEE 234
Cdd:PLN03232 1411 QRTIR---EEFKsCTMLVIAHRLNTIIDC-DKILVLSSGQVLEYDSPQE 1455
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
37-206 |
2.75e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 54.17 E-value: 2.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 37 VIGSNGAGKSTLFNLIAGTITPTVGSIHLndrnitrDPEYKraqyIGRIFQNPLLGtaSNMSLEDNMMITYRKGFKWLKR 116
Cdd:TIGR03719 36 VLGLNGAGKSTLLRIMAGVDKDFNGEARP-------QPGIK----VGYLPQEPQLD--PTKTVRENVEEGVAEIKDALDR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 117 --SLNHKMREFfRSELVQL--RMG-LEDRMK------------------------ENLALFSGGQRQALTLLMMVLSRPD 167
Cdd:TIGR03719 103 fnEISAKYAEP-DADFDKLaaEQAeLQEIIDaadawdldsqleiamdalrcppwdADVTKLSGGERRRVALCRLLLSKPD 181
|
170 180 190
....*....|....*....|....*....|....*....
gi 2046106881 168 LILLDEHTAALDPKNAAIvLEltnKFIQEYKLTAMMITH 206
Cdd:TIGR03719 182 MLLLDEPTNHLDAESVAW-LE---RHLQEYPGTVVAVTH 216
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
22-224 |
2.92e-08 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 52.72 E-value: 2.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 22 ISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRD---PEYKRAQY-IGRIFQNPLLgtaSNM 97
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPsfeATRSRNRYsVAYAAQKPWL---LNA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 98 SLEDNmmITYRKGFkwlkrslnHKMREFFRSELVQLR-------MGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLIL 170
Cdd:cd03290 94 TVEEN--ITFGSPF--------NKQRYKAVTDACSLQpdidllpFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVF 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 171 LDEHTAALDPK-NAAIVLELTNKFIQEYKLTAMMITHNMSHaIEYGNRLLMMDKG 224
Cdd:cd03290 164 LDDPFSALDIHlSDHLMQEGILKFLQDDKRTLVLVTHKLQY-LPHADWIIAMKDG 217
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
22-189 |
4.31e-08 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 53.66 E-value: 4.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 22 ISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLndrnitrdPEYKRAqyigrIF--QNP--LLGTasnm 97
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIAR--------PAGARV-----LFlpQRPylPLGT---- 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 98 slednmmityrkgfkwLKRSL--NHKMREFFRSELVQL--RMGLE---DRMKENLA---LFSGGQRQALTLLMMVLSRPD 167
Cdd:COG4178 442 ----------------LREALlyPATAEAFSDAELREAleAVGLGhlaERLDEEADwdqVLSLGEQQRLAFARLLLHKPD 505
|
170 180
....*....|....*....|..
gi 2046106881 168 LILLDEHTAALDPKNAAIVLEL 189
Cdd:COG4178 506 WLFLDEATSALDEENEAALYQL 527
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
21-226 |
4.37e-08 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 52.90 E-value: 4.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGsihlndrNITRDPEYKRaqyigrifqnpllgTASNMSLE 100
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-------KVDRNGEVSV--------------IAISAGLS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 101 DNMMITYRKGFKWLKRSLNHKMREFFRSELVQLRMgLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDP 180
Cdd:PRK13546 98 GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSE-LGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQ 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2046106881 181 KNAAIVLELTNKFiQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:PRK13546 177 TFAQKCLDKIYEF-KEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
18-236 |
5.07e-08 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 53.20 E-value: 5.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 18 ENQAISTINLKVNEGDFVTVIGSNGAGKSTlFNLIAGTITPTVG-------SIHLNDRNITRDPEYKRAQYIGRifqnpl 90
Cdd:NF000106 25 EVKAVDGVDLDVREGTVLGVLGP*GAA**R-GALPAHV*GPDAGrrpwrf*TWCANRRALRRTIG*HRPVR*GR------ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 91 lgtASNMSLEDNMMITYRKgfkwlkRSLNHKMREFFRSELVQlRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLIL 170
Cdd:NF000106 98 ---RESFSGRENLYMIGR*------LDLSRKDARARADELLE-RFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLY 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 171 LDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEEKK 236
Cdd:NF000106 168 LDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELK 232
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-67 |
5.51e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 53.40 E-value: 5.51e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 2 IELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLND 67
Cdd:TIGR03719 323 IEAENLTKAFG-----DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGE 383
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
25-231 |
7.19e-08 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 52.14 E-value: 7.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTV--------GSIHLNDRNITRDPeykrAQYIGRIfqNPLLGTASN 96
Cdd:PRK13547 20 LSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGaprgarvtGDVTLNGEPLAAID----APRLARL--RAVLPQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 97 MSLE---DNMMITYRkgFKWLKRS--LNHKMREFFRSELVqlRMGLEDRMKENLALFSGGQRqALTLLMMVLSR------ 165
Cdd:PRK13547 94 PAFAfsaREIVLLGR--YPHARRAgaLTHRDGEIAWQALA--LAGATALVGRDVTTLSGGEL-ARVQFARVLAQlwpphd 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 166 ----PDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAA 231
Cdd:PRK13547 169 aaqpPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
9-226 |
7.86e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 52.97 E-value: 7.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 9 MIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRnitrdpeyKRAQYIGRIFQN 88
Cdd:PRK13545 27 LFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS--------AALIAISSGLNG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 89 PLLGTaSNMSLEDNMMITYRKGFKwlkrSLNHKMREFfrSELVQLrmgledrMKENLALFSGGQRQALTLLMMVLSRPDL 168
Cdd:PRK13545 99 QLTGI-ENIELKGLMMGLTKEKIK----EIIPEIIEF--ADIGKF-------IYQPVKTYSSGMKSRLGFAISVHINPDI 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 169 ILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:PRK13545 165 LVIDEALSVGDQTFTKKCLDKMNEFKEQGK-TIFFISHSLSQVKSFCTKALWLHYGQV 221
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
2-206 |
9.09e-08 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 50.62 E-value: 9.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLndrnitrdPEYKRAQY 81
Cdd:cd03223 1 IELENLSLATPDGRVL----LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM--------PEGEDLLF 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGrifQNPLLGTASnmsLEDnmMITYrkgfKWLKRslnhkmreffrselvqlrmgledrmkenlalFSGGQRQALTLLMM 161
Cdd:cd03223 69 LP---QRPYLPLGT---LRE--QLIY----PWDDV-------------------------------LSGGEQQRLAFARL 105
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2046106881 162 VLSRPDLILLDEHTAALDPKNAAIVLELtnkfIQEYKLTAMMITH 206
Cdd:cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQL----LKELGITVISVGH 146
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-208 |
1.14e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 51.58 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLF------NLIAGTITpTVGSIHLNDRNItrdpe 75
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEG-----VSMEIYQSKVTAIIGPSGCGKSTFLkclnrmNELESEVR-VEGRVEFFNQNI----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 76 YKRAQYIGR-------IFQNPLLGTasnMSLEDNmmITYrkGFKWLKRSLNHKMREFFRSEL--VQLRMGLEDRMKENLA 146
Cdd:PRK14258 77 YERRVNLNRlrrqvsmVHPKPNLFP---MSVYDN--VAY--GVKIVGWRPKLEIDDIVESALkdADLWDEIKHKIHKSAL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2046106881 147 LFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNM 208
Cdd:PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL 211
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
8-227 |
1.30e-07 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 52.17 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 8 SMIFNQGTvNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKrAQYIGR--- 84
Cdd:PRK10261 327 SGLLNRVT-REVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGK-LQALRRdiq 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 85 -IFQNPLLGTASNMSLEDNMMITYRkgfkwLKRSLNHKMREFFRSELVQlRMGLedrmKENLAL-----FSGGQRQALTL 158
Cdd:PRK10261 405 fIFQDPYASLDPRQTVGDSIMEPLR-----VHGLLPGKAAAARVAWLLE-RVGL----LPEHAWrypheFSGGQRQRICI 474
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 159 LMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII 227
Cdd:PRK10261 475 ARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV 543
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-244 |
1.73e-07 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 51.75 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFnqGTVnenQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGtITPT---VGSIH-----LNDRNItR 72
Cdd:TIGR02633 1 LLEMKGIVKTF--GGV---KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHgtwDGEIYwsgspLKASNI-R 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 73 DPEYKRaqyIGRIFQNplLGTASNMSLEDNMM----ITYrKGFKWLKRSLNHKMREFFRselvQLRMGlEDRMKENLALF 148
Cdd:TIGR02633 74 DTERAG---IVIIHQE--LTLVPELSVAENIFlgneITL-PGGRMAYNAMYLRAKNLLR----ELQLD-ADNVTRPVGDY 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 149 SGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTnKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEIIf 228
Cdd:TIGR02633 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDII-RDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV- 220
|
250
....*....|....*.
gi 2046106881 229 eaAGEEKKALTVEKLI 244
Cdd:TIGR02633 221 --ATKDMSTMSEDDII 234
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
29-232 |
2.40e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 51.32 E-value: 2.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 29 VNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLndrnitrdPEYKRAQYIGRifQNPLLGTASnmsLEdnMMITYR 108
Cdd:PRK10636 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF--------PGNWQLAWVNQ--ETPALPQPA---LE--YVIDGD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 109 KGFKWLKRSLNHKMRE-------------------FFRSELVQLRMGL---EDRMKENLALFSGGQRQALTLLMMVLSRP 166
Cdd:PRK10636 89 REYRQLEAQLHDANERndghaiatihgkldaidawTIRSRAASLLHGLgfsNEQLERPVSDFSGGWRMRLNLAQALICRS 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 167 DLILLDEHTAALDpKNAAIVLEltnKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKgEIIFEAAG 232
Cdd:PRK10636 169 DLLLLDEPTNHLD-LDAVIWLE---KWLKSYQGTLILISHDRDFLDPIVDKIIHIEQ-QSLFEYTG 229
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-67 |
2.41e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 51.27 E-value: 2.41e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 2 IELKNVSMIFNqgtvnENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLND 67
Cdd:PRK11819 325 IEAENLSKSFG-----DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE 385
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
20-178 |
2.73e-07 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 51.07 E-value: 2.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 20 QAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNI----TRDpeyKRAQYIGRIFQNplLGTAS 95
Cdd:PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMrfasTTA---ALAAGVAIIYQE--LHLVP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 96 NMSLEDNMM---ITYRKGfkWLKRSLnhkMREFFRSELVQLRMGLEDRMKenLALFSGGQRQaltllmMV-----LSR-P 166
Cdd:PRK11288 93 EMTVAENLYlgqLPHKGG--IVNRRL---LNYEAREQLEHLGVDIDPDTP--LKYLSIGQRQ------MVeiakaLARnA 159
|
170
....*....|..
gi 2046106881 167 DLILLDEHTAAL 178
Cdd:PRK11288 160 RVIAFDEPTSSL 171
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-234 |
2.89e-07 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 50.82 E-value: 2.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVnenqaISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQ 80
Cdd:PRK15439 11 LLCARSISKQYSGVEV-----LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 81 Y-IGRIFQNPLLgtASNMSLEDNMMITYRKGFKWLKrslnhKMREFFRSELVQLrmgledrmkeNLALFSG----GQRQA 155
Cdd:PRK15439 86 LgIYLVPQEPLL--FPNLSVKENILFGLPKRQASMQ-----KMKQLLAALGCQL----------DLDSSAGslevADRQI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 156 LTLLMMVLSRPDLILLDEHTAALDPknaaivLELTNKFIQEYKLTA-----MMITHNMSHAIEYGNRLLMMDKGEIIFEA 230
Cdd:PRK15439 149 VEILRGLMRDSRILILDEPTASLTP------AETERLFSRIRELLAqgvgiVFISHKLPEIRQLADRISVMRDGTIALSG 222
|
....
gi 2046106881 231 AGEE 234
Cdd:PRK15439 223 KTAD 226
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-179 |
1.16e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 49.12 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 2 IELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDrNITrdpeykraqy 81
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKN-----LNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-NAN---------- 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPLLGTASNMSLEDNMMityrkgfKWLKRSLNHKMrefFRSELVQLRMGlEDRMKENLALFSGGQRQALTLLMM 161
Cdd:PRK15064 384 IGYYAQDHAYDFENDLTLFDWMS-------QWRQEGDDEQA---VRGTLGRLLFS-QDDIKKSVKVLSGGEKGRMLFGKL 452
|
170
....*....|....*...
gi 2046106881 162 VLSRPDLILLDEHTAALD 179
Cdd:PRK15064 453 MMQKPNVLVMDEPTNHMD 470
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-189 |
3.03e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 48.00 E-value: 3.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFnqGTVNenqAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGtITPT---VGSIH-----LNDRNItR 72
Cdd:PRK13549 5 LLEMKNITKTF--GGVK---ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHgtyEGEIIfegeeLQASNI-R 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 73 DPEYKRaqyIGRIFQNplLGTASNMSLEDNMMItyrkGFKWLKRSLNHKMREFFRSE--LVQLRMGLEDRMK-ENLalfS 149
Cdd:PRK13549 78 DTERAG---IAIIHQE--LALVKELSVLENIFL----GNEITPGGIMDYDAMYLRAQklLAQLKLDINPATPvGNL---G 145
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2046106881 150 GGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLEL 189
Cdd:PRK13549 146 LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-244 |
4.16e-06 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 47.47 E-value: 4.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 3 ELKNVsmifnqgTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNIT-RDPEYKRAQY 81
Cdd:PRK09700 267 EVRNV-------TSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISpRSPLDAVKKG 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 82 IGRIFQNPL-LGTASNMSLEDNMMIT---YRKGFKWLKRSLNHKMREFF---RSELVQLRMGledRMKENLALFSGGQRQ 154
Cdd:PRK09700 340 MAYITESRRdNGFFPNFSIAQNMAISrslKDGGYKGAMGLFHEVDEQRTaenQRELLALKCH---SVNQNITELSGGNQQ 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTNKFIQEYKlTAMMITHNMSHAIEYGNRLLMMDKGEI--IFEAag 232
Cdd:PRK09700 417 KVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK-VILMVSSELPEIITVCDRIAVFCEGRLtqILTN-- 493
|
250
....*....|..
gi 2046106881 233 eeKKALTVEKLI 244
Cdd:PRK09700 494 --RDDMSEEEIM 503
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
8-238 |
4.76e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 47.60 E-value: 4.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 8 SMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIhlndrnitrdpeykraQYIGRIFQ 87
Cdd:TIGR01271 428 GLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI----------------KHSGRISF 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 88 NPLLGTASNMSLEDNMM--ITYRKgfkwlkrslnhkmrefFRSELVQLRMGLEDRM-----KENLAL------FSGGQRQ 154
Cdd:TIGR01271 492 SPQTSWIMPGTIKDNIIfgLSYDE----------------YRYTSVIKACQLEEDIalfpeKDKTVLgeggitLSGGQRA 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 155 ALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLE------LTNKfiqeyklTAMMITHNMSHaIEYGNRLLMMDKGEIIF 228
Cdd:TIGR01271 556 RISLARAVYKDADLYLLDSPFTHLDVVTEKEIFEsclcklMSNK-------TRILVTSKLEH-LKKADKILLLHEGVCYF 627
|
250
....*....|
gi 2046106881 229 EAAGEEKKAL 238
Cdd:TIGR01271 628 YGTFSELQAK 637
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
39-189 |
5.51e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 46.02 E-value: 5.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 39 GSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEykraQYIGRIFQNplLGTASNMSLEDNMMItyrkgfkWlkrsl 118
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAK----PYCTYIGHN--LGLKLEMTVFENLKF-------W----- 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 119 nhkmREFFRS-ELVQLRM---GLEDRMKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLEL 189
Cdd:PRK13541 95 ----SEIYNSaETLYAAIhyfKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNL 165
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
37-206 |
8.20e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 46.65 E-value: 8.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 37 VIGSNGAGKSTLFNLIAGTITPTVGSIHLndrnitrDPEYKraqyIGRIFQNPLLGTasNMSLEDNMMITYRKGFKWLKR 116
Cdd:PRK11819 38 VLGLNGAGKSTLLRIMAGVDKEFEGEARP-------APGIK----VGYLPQEPQLDP--EKTVRENVEEGVAEVKAALDR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 117 --SLNHKMRE----FfrSELVQlRMG-LEDRMKE----NL---------AL-----------FSGGQRQALTLLMMVLSR 165
Cdd:PRK11819 105 fnEIYAAYAEpdadF--DALAA-EQGeLQEIIDAadawDLdsqleiamdALrcppwdakvtkLSGGERRRVALCRLLLEK 181
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2046106881 166 PDLILLDEHTAALDpknAAIVLELtNKFIQEYKLTAMMITH 206
Cdd:PRK11819 182 PDMLLLDEPTNHLD---AESVAWL-EQFLHDYPGTVVAVTH 218
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
3-206 |
2.25e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 45.33 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 3 ELKNVSMifnqgTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIH---------LNDRNITRD 73
Cdd:PRK11147 321 EMENVNY-----QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHcgtklevayFDQHRAELD 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 74 PEykraqyigrifqnpllgtasnMSLEDNM-------MITYRKG--FKWLKRSLNHKMREffrselvqlrmgledrMKEN 144
Cdd:PRK11147 396 PE---------------------KTVMDNLaegkqevMVNGRPRhvLGYLQDFLFHPKRA----------------MTPV 438
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046106881 145 LALfSGGQRQALtLLMMVLSRP-DLILLDEHTAALDPKNaaivLELTNKFIQEYKLTAMMITH 206
Cdd:PRK11147 439 KAL-SGGERNRL-LLARLFLKPsNLLILDEPTNDLDVET----LELLEELLDSYQGTVLLVSH 495
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
27-265 |
2.72e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 44.94 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 27 LKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHL-NDRNITR---DPEyKRAQyiGRIFQNPLLGTASnmsledn 102
Cdd:PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYeQDLIVARlqqDPP-RNVE--GTVYDFVAEGIEE------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 103 mMITYRKGFKWLKRSLNHKMREFFRSELVQLRMGL--------EDRMKENLAL-----------FSGG-QRQAlTLLMMV 162
Cdd:PRK11147 94 -QAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLdhhnlwqlENRINEVLAQlgldpdaalssLSGGwLRKA-ALGRAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 163 LSRPDLILLDEHTAALDPknAAIvlELTNKFIQEYKLTAMMITHNMSHAIEYGNRLLMMDKGEII-----FEAAGEEK-K 236
Cdd:PRK11147 172 VSNPDVLLLDEPTNHLDI--ETI--EWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVsypgnYDQYLLEKeE 247
|
250 260
....*....|....*....|....*....
gi 2046106881 237 ALTVEKLidkfhqirhKSFENDRTLLSEE 265
Cdd:PRK11147 248 ALRVEEL---------QNAEFDRKLAQEE 267
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
8-228 |
3.02e-05 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 44.46 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 8 SMIFNQGTVNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRnITRDPEYkraQYI--GRI 85
Cdd:cd03291 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-ISFSSQF---SWImpGTI 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 86 FQNPLLGTASNmslednmmiTYRkgFKWLKRSLNhkmrefFRSELVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSR 165
Cdd:cd03291 115 KENIIFGVSYD---------EYR--YKSVVKACQ------LEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2046106881 166 PDLILLDEHTAALDPKNAAIVLE------LTNKfiqeyklTAMMITHNMSHaIEYGNRLLMMDKGEIIF 228
Cdd:cd03291 178 ADLYLLDSPFGYLDVFTEKEIFEscvcklMANK-------TRILVTSKMEH-LKKADKILILHEGSSYF 238
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
22-226 |
6.02e-05 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 44.05 E-value: 6.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 22 ISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTV-GSIHLNDRNI-TRDPEYKRAQYIGRIFQN-PLLGTASNMS 98
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFeGNVFINGKPVdIRNPAQAIRAGIAMVPEDrKRHGIVPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 99 LEDNMMITYRKGFKWLKRSLNHKMREFFRSELVQLRMgleDRMKENLAL--FSGGQRQALTLLMMVLSRPDLILLDEHTA 176
Cdd:TIGR02633 356 VGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV---KTASPFLPIgrLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2046106881 177 ALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEI 226
Cdd:TIGR02633 433 GVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
25-227 |
8.40e-05 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 43.66 E-value: 8.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNItRD--PEYKRAQyIGRIFQNPLLgtaSNMSLEDN 102
Cdd:COG5265 377 VSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDI-RDvtQASLRAA-IGIVPQDTVL---FNDTIAYN 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 103 mmITY--------------RkgfkwlkrsLNHkMREFFRSelvqLRMGLEDRMKE-NLALfSGGQRQALTLLMMVLSRPD 167
Cdd:COG5265 452 --IAYgrpdaseeeveaaaR---------AAQ-IHDFIES----LPDGYDTRVGErGLKL-SGGEKQRVAIARTLLKNPP 514
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 168 LILLDEHTAALDPKnaaivlelTNKFIQEyKL-------TAMMITHNMS---HAieygNRLLMMDKGEII 227
Cdd:COG5265 515 ILIFDEATSALDSR--------TERAIQA-ALrevargrTTLVIAHRLStivDA----DEILVLEAGRIV 571
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1-68 |
1.36e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 42.96 E-value: 1.36e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 1 MIELKNVSMIFNQGTVNENqaistINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHL--NDR 68
Cdd:PRK15064 1 MLSTANITMQFGAKPLFEN-----ISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLdpNER 65
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
25-224 |
2.10e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 42.46 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYIGRIFQNPLL--GT-ASNMSled 101
Cdd:PTZ00243 1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLfdGTvRQNVD--- 1405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 102 nmmityrkgfKWLKRSlnhkMREFFRS-ELVQLRM-------GLEDRMKENLALFSGGQRQALTLLMMVLSR-PDLILLD 172
Cdd:PTZ00243 1406 ----------PFLEAS----SAEVWAAlELVGLRErvaseseGIDSRVLEGGSNYSVGQRQLMCMARALLKKgSGFILMD 1471
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2046106881 173 EHTAALDPKnaaivlelTNKFIQEYKLTA------MMITHNMsHAIEYGNRLLMMDKG 224
Cdd:PTZ00243 1472 EATANIDPA--------LDRQIQATVMSAfsaytvITIAHRL-HTVAQYDKIIVMDHG 1520
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
21-206 |
2.76e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 41.70 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 21 AISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGtITPT---VGSIHLND-----RNItRDPEykrAQYIGRIFQN---- 88
Cdd:NF040905 16 ALDDVNLSVREGEIHALCGENGAGKSTLMKVLSG-VYPHgsyEGEILFDGevcrfKDI-RDSE---ALGIVIIHQElali 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 89 PLLGTASNMSLEDNmmiTYRKGF-KWlkRSLNHKMREFFRselvqlRMGLEDRMKENLALFSGGQRQaLTLLMMVLSRP- 166
Cdd:NF040905 91 PYLSIAENIFLGNE---RAKRGViDW--NETNRRARELLA------KVGLDESPDTLVTDIGVGKQQ-LVEIAKALSKDv 158
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2046106881 167 DLILLDEHTAALDPKNAAIVLELtnkfIQEYK---LTAMMITH 206
Cdd:NF040905 159 KLLILDEPTAALNEEDSAALLDL----LLELKaqgITSIIISH 197
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
17-234 |
3.35e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 42.03 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 17 NENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEykraqyIGRIFqnpllgtasN 96
Cdd:PLN03130 628 AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQ------VSWIF---------N 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 97 MSLEDNMMI-------TYRKGFKwlKRSLNHkmreffrsELVQLRMGLEDRMKENLALFSGGQRQALTLLMMVLSRPDLI 169
Cdd:PLN03130 693 ATVRDNILFgspfdpeRYERAID--VTALQH--------DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVY 762
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046106881 170 LLDEHTAALDPKNAAIVL------ELTNKfiqeyklTAMMIThNMSHAIEYGNRLLMMDKGEIIFEAAGEE 234
Cdd:PLN03130 763 IFDDPLSALDAHVGRQVFdkcikdELRGK-------TRVLVT-NQLHFLSQVDRIILVHEGMIKEEGTYEE 825
|
|
| ABC_SMC_barmotin |
cd03278 |
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a ... |
144-224 |
3.98e-04 |
|
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Pssm-ID: 213245 [Multi-domain] Cd Length: 197 Bit Score: 40.53 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 144 NLALFSGGQRQ--ALTLLMMVLS-RPD-LILLDEHTAALDPKNAAIVLELTNKFIQEYKLtaMMITHNmSHAIEYGNRLL 219
Cdd:cd03278 110 RLSLLSGGEKAltALALLFAIFRvRPSpFCVLDEVDAALDDANVERFARLLKEFSKETQF--IVITHR-KGTMEAADRLY 186
|
....*...
gi 2046106881 220 ---MMDKG 224
Cdd:cd03278 187 gvtMQESG 194
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
35-179 |
5.26e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 41.00 E-value: 5.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 35 VTVIGSNGAGKSTLFNLIAGTITPTVGSIHlndrnitRDPEYKRAQYIGR------IFQNPLLgtasnmsledNMMITYr 108
Cdd:PLN03073 538 IAMVGPNGIGKSTILKLISGELQPSSGTVF-------RSAKVRMAVFSQHhvdgldLSSNPLL----------YMMRCF- 599
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2046106881 109 kgfkwlKRSLNHKMREFFRSelvqlrMGLEDrmkeNLAL-----FSGGQRQALTLLMMVLSRPDLILLDEHTAALD 179
Cdd:PLN03073 600 ------PGVPEQKLRAHLGS------FGVTG----NLALqpmytLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
2-54 |
5.26e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 41.15 E-value: 5.26e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 2046106881 2 IELKNvsmifnqGTV--NENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAG 54
Cdd:PRK10938 261 IVLNN-------GVVsyNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
32-213 |
6.58e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.28 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 32 GDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYIGRifqnpllgtasnmslednmmityrkgf 111
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIV--------------------------- 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 112 kwlkrslnhkmreffrselvqlrmgledrmKENLALFSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKNAAIVLELTN 191
Cdd:smart00382 55 ------------------------------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEE 104
|
170 180
....*....|....*....|....*..
gi 2046106881 192 -----KFIQEYKLTAMMITHNMSHAIE 213
Cdd:smart00382 105 lrlllLLKSEKNLTVILTTNDEKDLGP 131
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
129-207 |
7.35e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 39.27 E-value: 7.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 129 ELVQLRMGLedrmkenlalfSGGQRQALTL-----LMMVLSRPdLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMM 203
Cdd:cd03227 70 ELIFTRLQL-----------SGGEKELSALalilaLASLKPRP-LYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIV 136
|
....
gi 2046106881 204 ITHN 207
Cdd:cd03227 137 ITHL 140
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
29-76 |
1.03e-03 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 39.09 E-value: 1.03e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 2046106881 29 VNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEY 76
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQY 69
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
20-99 |
1.16e-03 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 39.99 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 20 QAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNIT-RDPEYKRAQYIGRIFQN----PLLGTA 94
Cdd:PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfNGPKSSQEAGIGIIHQElnliPQLTIA 97
|
....*
gi 2046106881 95 SNMSL 99
Cdd:PRK10762 98 ENIFL 102
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
32-224 |
1.22e-03 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 40.21 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 32 GDFVTVIGSNGAGKSTLFNLIAGTitPTVGSIHlNDRNITRDPeyKRAQYIGRIF----QNPLlgTASNMSLEDNMMITy 107
Cdd:PLN03140 906 GVLTALMGVSGAGKTTLMDVLAGR--KTGGYIE-GDIRISGFP--KKQETFARISgyceQNDI--HSPQVTVRESLIYS- 977
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 108 rkGFKWLKRSLNHKMREFFRSELVQLrMGLEDRMKENLAL-----FSGGQRQALTLLMMVLSRPDLILLDEHTAALDPKN 182
Cdd:PLN03140 978 --AFLRLPKEVSKEEKMMFVDEVMEL-VELDNLKDAIVGLpgvtgLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2046106881 183 AAIVLELTNKFIQEYKlTAMMITHNMSHAI-EYGNRLLMMDKG 224
Cdd:PLN03140 1055 AAIVMRTVRNTVDTGR-TVVCTIHQPSIDIfEAFDELLLMKRG 1096
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
25-244 |
1.23e-03 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 40.00 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 25 INLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNIT----RD---------PEYKRAQyigrifqnpll 91
Cdd:COG1129 271 VSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRirspRDairagiayvPEDRKGE----------- 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 92 GTASNMSLEDNMMITYRKGFKWLKRSLNHKMREFFRSELVQLRM---GLEDRMKeNLalfSGGQRQALtllmmVLSR--- 165
Cdd:COG1129 340 GLVLDLSIRENITLASLDRLSRGGLLDRRRERALAEEYIKRLRIktpSPEQPVG-NL---SGGNQQKV-----VLAKwla 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 166 --PDLILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMITHNMSHAIEYGNRLLMMDKGEIIFEAAGEEkkaLTVEKL 243
Cdd:COG1129 411 tdPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVMREGRIVGELDREE---ATEEAI 486
|
.
gi 2046106881 244 I 244
Cdd:COG1129 487 M 487
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
13-204 |
2.28e-03 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 38.84 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 13 QGT--VNENQAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNITRDPEYKRAQYIGRIFQ--- 87
Cdd:PRK10938 8 QGTfrLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQrnn 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 88 NPLLGTAsnmslEDNmmiTYRKGFKWLKRSLNHKMREFFRSELVQLRMGLEDRMKEnlaLFSGGQRQALtLLMMVLSRPD 167
Cdd:PRK10938 88 TDMLSPG-----EDD---TGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKY---LSTGETRKTL-LCQALMSEPD 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 2046106881 168 LILLDEHTAALDPKNAAIVLELTNKFIQEyKLTAMMI 204
Cdd:PRK10938 156 LLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLV 191
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
20-180 |
5.87e-03 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 37.80 E-value: 5.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 20 QAISTINLKVNEGDFVTVIGSNGAGKSTLFNLIAGTITPTVGSIHLNDRNItRDPEYKRA---------QYIGRifqN-- 88
Cdd:NF033858 15 VALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDM-ADARHRRAvcpriaympQGLGK---Nly 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 89 PLLgtasnmSLEDNMmityrkgfkwlkrslnhkmrEFF-------RSElvqlRmglEDRMKE-----NLALF-------- 148
Cdd:NF033858 91 PTL------SVFENL--------------------DFFgrlfgqdAAE----R---RRRIDEllratGLAPFadrpagkl 137
|
170 180 190
....*....|....*....|....*....|..
gi 2046106881 149 SGGQRQALTLLMMVLSRPDLILLDEHTAALDP 180
Cdd:NF033858 138 SGGMKQKLGLCCALIHDPDLLILDEPTTGVDP 169
|
|
| MMR_HSR1 |
pfam01926 |
50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete ... |
34-71 |
6.14e-03 |
|
50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide.
Pssm-ID: 460387 [Multi-domain] Cd Length: 113 Bit Score: 35.67 E-value: 6.14e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2046106881 34 FVTVIG-SNgAGKSTLFNLIAG-----------TITPTVGSIHLNDRNIT 71
Cdd:pfam01926 1 RVALVGrPN-VGKSTLINALTGakaivsdypgtTRDPNEGRLELKGKQII 49
|
|
| SbcC_Walker_B |
pfam13558 |
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ... |
123-192 |
9.79e-03 |
|
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.
Pssm-ID: 463921 [Multi-domain] Cd Length: 90 Bit Score: 34.52 E-value: 9.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046106881 123 REFFRSEL-VQLRMGLEDRMKENLALFSGGQRQALTLLMMVLS-------------RPDLILLDEHTAALDPKNAAIVLE 188
Cdd:pfam13558 7 RNWLSFEVeVRDEDGSEVETYRRSGGLSGGEKQLLAYLPLAAAlaaqygsaegrppAPRLVFLDEAFAKLDEENIRTALE 86
|
....
gi 2046106881 189 LTNK 192
Cdd:pfam13558 87 LLRA 90
|
|
| |
