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Conserved domains on  [gi|2046765938|ref|WP_214495289|]
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MULTISPECIES: amino acid ABC transporter permease [unclassified Thermoanaerobacter]

Protein Classification

amino acid ABC transporter permease( domain architecture ID 11433582)

amino acid ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter which binds and transports amino acids

Gene Ontology:  GO:0140359|GO:0042626|GO:0006865
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-218 9.03e-84

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 247.68  E-value: 9.03e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938   1 MSVDFLSMVKYSHLFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQ 80
Cdd:COG0765     1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  81 FGIDIPAFTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKES 160
Cdd:COG0765    81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2046765938 161 AIISVIGFADLTRQADIIQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERRLRAGD 218
Cdd:COG0765   161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-218 9.03e-84

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 247.68  E-value: 9.03e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938   1 MSVDFLSMVKYSHLFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQ 80
Cdd:COG0765     1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  81 FGIDIPAFTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKES 160
Cdd:COG0765    81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2046765938 161 AIISVIGFADLTRQADIIQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERRLRAGD 218
Cdd:COG0765   161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
PRK15100 PRK15100
cystine ABC transporter permease;
14-218 2.09e-48

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 157.99  E-value: 2.09e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  14 LFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQFGIDIPAFTAGVS 93
Cdd:PRK15100   14 FLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  94 ALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIISVIGFADLTR 173
Cdd:PRK15100   94 GLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQVPELFR 173

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2046765938 174 QADIIQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERRLRAGD 218
Cdd:PRK15100  174 QAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQE 218
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 18-214 2.11e-46

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 152.70  E-value: 2.11e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  18 GLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQFGIDIPAFTAGVSALAI 97
Cdd:TIGR03003  16 GLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGIRLPALVAGVLGLGL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  98 NSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIISVIGFADLTRQADI 177
Cdd:TIGR03003  96 HYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELMNQAKS 175

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2046765938 178 IQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERRL 214
Cdd:TIGR03003 176 IGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 19-170 1.45e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 77.32  E-value: 1.45e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  19 LLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIY---NGLMQFGIDIPAFTAGVSAL 95
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVllfGVLLGWGILPGLGLPALILA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046765938  96 AINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIISVIGFAD 170
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE 155
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 33-215 1.43e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 60.78  E-value: 1.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  33 GVILGLIVALIKMSSIKPISFigaSYVEIIRGTPLLVQLLLIYNgLMQFGIDIPAFTAGVSALAINSAAYVAEIIRAGIQ 112
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLR---PLIDLLQALPSFVLAILLVV-IAILSILGHGILPAIILALLGWAGYARLIRRAALR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938 113 AVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIISVI----GFADLTRQADIIQSITYKYFeP 188
Cdd:pfam00528  77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEIQG-P 155

                         170       180
                  ....*....|....*....|....*..
gi 2046765938 189 YIIIAAIYFIMTFIFSRLLGIFERRLR 215
Cdd:pfam00528 156 VLAAALILLLLNLLVDILQRLLDPRVR 182
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-218 9.03e-84

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 247.68  E-value: 9.03e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938   1 MSVDFLSMVKYSHLFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQ 80
Cdd:COG0765     1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  81 FGIDIPAFTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKES 160
Cdd:COG0765    81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2046765938 161 AIISVIGFADLTRQADIIQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERRLRAGD 218
Cdd:COG0765   161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 1-216 9.14e-58

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 182.22  E-value: 9.14e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938   1 MSVDFlsMVKYSHLFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQ 80
Cdd:COG4160     1 MDLDL--LFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQ 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  81 FGI--DIP-------AFTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGN 151
Cdd:COG4160    79 FEWvrESWlwpllrdPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSN 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046765938 152 EFIVMLKESAIISVIGFADLTRQADIIQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERRLRA 216
Cdd:COG4160   159 EVILMLKATALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRLLR 223
PRK15100 PRK15100
cystine ABC transporter permease;
14-218 2.09e-48

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 157.99  E-value: 2.09e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  14 LFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQFGIDIPAFTAGVS 93
Cdd:PRK15100   14 FLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  94 ALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIISVIGFADLTR 173
Cdd:PRK15100   94 GLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQVPELFR 173

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2046765938 174 QADIIQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERRLRAGD 218
Cdd:PRK15100  174 QAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQE 218
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 18-214 2.11e-46

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 152.70  E-value: 2.11e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  18 GLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQFGIDIPAFTAGVSALAI 97
Cdd:TIGR03003  16 GLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGIRLPALVAGVLGLGL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  98 NSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIISVIGFADLTRQADI 177
Cdd:TIGR03003  96 HYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELMNQAKS 175

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2046765938 178 IQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERRL 214
Cdd:TIGR03003 176 IGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 14-215 7.46e-36

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 125.55  E-value: 7.46e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  14 LFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGL--MQFGIDIPAFTAG 91
Cdd:PRK09494   14 LLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALpmAFNDLRIDPFTAA 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  92 VSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIISVIGFADL 171
Cdd:PRK09494   94 VVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVAEL 173

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2046765938 172 TRQADIIQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERRLR 215
Cdd:PRK09494  174 TRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMK 217
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
16-213 3.06e-32

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 117.09  E-value: 3.06e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  16 VSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQF-------------- 81
Cdd:PRK11123    8 ASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLlltlsdgftlnlgf 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  82 ----------GIDIPAFTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGN 151
Cdd:PRK11123   88 vqipvqmdieNFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGN 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2046765938 152 EFIVMLKESAIISVIGFADLTRQADIIQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERR 213
Cdd:PRK11123  168 QWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIELR 229
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
4-178 1.71e-30

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 111.85  E-value: 1.71e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938   4 DFLSMVKYSHLFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLL---LIYNGLMQ 80
Cdd:PRK15107    5 DWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLwfyLIVPGFLQ 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  81 --FGI----DIPAFTAGVsALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFI 154
Cdd:PRK15107   85 nvLGLspktDIRLISAMV-AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGI 163

                         170       180
                  ....*....|....*....|....
gi 2046765938 155 VMLKESAIISVIGFADLTRQADII 178
Cdd:PRK15107  164 VLFQDTSLVYVLSLADFFRTASTI 187
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 14-109 6.26e-28

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 101.46  E-value: 6.26e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  14 LFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQFGIDIPAFTAGVS 93
Cdd:TIGR01726   4 FLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTAAVI 83

                          90
                  ....*....|....*.
gi 2046765938  94 ALAINSAAYVAEIIRA 109
Cdd:TIGR01726  84 ALTLFYGAYLAEIFRG 99
PRK15069 PRK15069
histidine ABC transporter permease HisM;
16-213 2.30e-27

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 103.98  E-value: 2.30e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  16 VSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQFGI--DIP------- 86
Cdd:PRK15069   20 FTGLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTGMYSLEIvrGTDlldaffr 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  87 -AFTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIISV 165
Cdd:PRK15069  100 sGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLAFT 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2046765938 166 IGFADLTRQADIIQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERR 213
Cdd:PRK15069  180 ATVPDILKIARDINSATYQPFQAFGIAAVLYLIISFVLISLFRRAERR 227
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 11-172 2.87e-26

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 104.07  E-value: 2.87e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  11 YSHLFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQ---------- 80
Cdd:COG4597    84 YGRAFLVGLLNTLLVAVLGIVLATILGFLVGIARLSSNWLVSKLATVYVEIFRNIPLLLQIFFWYFAVLEalpsprqsls 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  81 -------------------------------------------------------------------------------F 81
Cdd:COG4597   164 lfdgvflnnrglylpapvfepgfgwvlaallaaivaafvlrrwarrrqeatgqrfpvwwislallvglpllaflllgapL 243

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  82 GIDIPA---------------FTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNIL 146
Cdd:COG4597   244 SLDYPElkgfnfrggltlspeFVALLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVII 323

                         250       260
                  ....*....|....*....|....*.
gi 2046765938 147 PALGNEFIVMLKESAIISVIGFADLT 172
Cdd:COG4597   324 PPLTSQYLNLTKNSSLAVAIGYPDLV 349
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
11-220 3.26e-24

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 95.63  E-value: 3.26e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  11 YSHLFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGL----------MQ 80
Cdd:PRK15135    5 FSGVILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLqialnsvteaLG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  81 FG-IDIPAFTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKE 159
Cdd:PRK15135   85 VGqIDIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKA 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046765938 160 SAIISVIGFADLTRQADIIQSITYKYFEPYIIIAAIYFIMTFIFSRLLGIFERRLRAGDTR 220
Cdd:PRK15135  165 TALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLWLERRYSVGVKR 225
artM PRK11122
arginine ABC transporter permease ArtM;
8-183 1.93e-22

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 90.79  E-value: 1.93e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938   8 MVKYSHLFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQFG--IDI 85
Cdd:PRK11122    1 MLEYLPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPwlQEY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  86 P--------AFTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRyVIIPQAIKNILPALGNEFIVML 157
Cdd:PRK11122   81 PwlwhllsqPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLR-ILLPYAFKRALSSYSNEVVLVF 159

                         170       180
                  ....*....|....*....|....*.
gi 2046765938 158 KESAIISVIGFADLTRQADIIQSITY 183
Cdd:PRK11122  160 KSTSLAYTITLMDVMGYSQLLYGRTY 185
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 19-170 1.45e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 77.32  E-value: 1.45e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  19 LLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIY---NGLMQFGIDIPAFTAGVSAL 95
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVllfGVLLGWGILPGLGLPALILA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2046765938  96 AINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIISVIGFAD 170
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE 155
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 33-215 1.43e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 60.78  E-value: 1.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  33 GVILGLIVALIKMSSIKPISFigaSYVEIIRGTPLLVQLLLIYNgLMQFGIDIPAFTAGVSALAINSAAYVAEIIRAGIQ 112
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLR---PLIDLLQALPSFVLAILLVV-IAILSILGHGILPAIILALLGWAGYARLIRRAALR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938 113 AVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIISVI----GFADLTRQADIIQSITYKYFeP 188
Cdd:pfam00528  77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEIQG-P 155

                         170       180
                  ....*....|....*....|....*..
gi 2046765938 189 YIIIAAIYFIMTFIFSRLLGIFERRLR 215
Cdd:pfam00528 156 VLAAALILLLLNLLVDILQRLLDPRVR 182
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 11-146 5.52e-09

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 54.32  E-value: 5.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  11 YSHLFVSGLLMTLKLTFLAVTIGVILGLIVALI---KMSSIKPISFIGASYVEIIRGTPLLVQLLLIynglmqfgidIPA 87
Cdd:COG3639    45 YLPDLLSALLETLAIALLGTLLGAVLALPLAFLaarNLAPNPWVRLLARRLLNVLRAIPELVWALIF----------VAA 114

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2046765938  88 F----TAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNIL 146
Cdd:COG3639   115 VglgpFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFL 177
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 12-149 7.65e-09

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 54.00  E-value: 7.65e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  12 SHLFVSGLLMTLKLTFLAVTIGVILGLIVALIkMSSIKPISFIGASYVEIIRGTPLLVQLLLIyngLMQFGIDipaFTAG 91
Cdd:COG0600    56 SGELWEHLLASLLRVLLGFALAALLGVPLGLL-LGLSRLLRRLLDPLLVFLRPIPPLALAPLL---ILWFGIG---EASK 128

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2046765938  92 VSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPAL 149
Cdd:COG0600   129 IFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGL 186
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 11-146 1.52e-07

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 50.23  E-value: 1.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  11 YSHLFVSGLLMTLKLTFLAVTIGVILGLIVALI---KMSSIKPISFIGASYVEIIRGTPLLV--QLLLIYNGLMQFgidi 85
Cdd:TIGR01097  52 YLPRILKALLETLAMAILGTVLAAVLAVPLALLaarNITPSPWLYGLARLLLNFLRAIPELVwaLIFVAAVGLGPF---- 127

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046765938  86 paftAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNIL 146
Cdd:TIGR01097 128 ----AGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 15-149 2.86e-06

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 46.64  E-value: 2.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  15 FVSGLLMTLKLTFLAVTIGVILGLIVALikmsSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQFGIDI---PAFTAG 91
Cdd:COG1177    59 LLDALLNSLLIALLSTLLATVLGTPAAL----ALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALglsGGLWGL 134

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2046765938  92 VSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPqaikNILPAL 149
Cdd:COG1177   135 ILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLP----LIAPGI 188
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 12-146 3.05e-06

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 46.67  E-value: 3.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  12 SHLFVSGLLMTLKLTFLAVTIGVILGLIVALIkmssIKPISFIGASYVEIIRGTPLL-------VQLLLIY--NG----- 77
Cdd:COG0555    49 SPRVLAALKLSLGTALIAALINLVFGLPLAWV----LVRYRFPGKRLVDALVDLPFAlptavagIALLLLFgpNGwlgql 124

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  78 LMQFGIDIPAFTAGVS-ALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNIL 146
Cdd:COG0555   125 LAPLGIKVAFTPLGIVlAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALL 194
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 19-167 1.15e-05

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 44.66  E-value: 1.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  19 LLMTLKLTFLAVTIGVILGLIVALIKMSSIKP---ISFIGASYVEIIRGTPLLVQLLLIynglmqfgidIPaFT------ 89
Cdd:COG2011    20 LYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPnpvLYRVLGVIVNIFRSIPFIILLVAL----------IP-LTrlivgt 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  90 -----AGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIIS 164
Cdd:COG2011    89 sigttAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMAG 168


                  ...
gi 2046765938 165 VIG 167
Cdd:COG2011   169 AVG 171
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-163 6.82e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 43.23  E-value: 6.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938   1 MSVDFLSMVKYSHLFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQ---LLLIYNG 77
Cdd:COG1178   322 LTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLglgLLLLFNR 401

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  78 LMQFGIdIPAFTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVML 157
Cdd:COG1178   402 PLPLLL-YGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSM 480


                  ....*..
gi 2046765938 158 KE-SAII 163
Cdd:COG1178   481 KElSATL 487
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
19-141 2.08e-03

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 38.60  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  19 LLMTLKLTFLAVTIGVILGLIVALIkMSSIKpisFIGASYVEIIRGTPLLV---------QLLLIYNGLMQ------FGI 83
Cdd:COG1178    56 LGNTLLLALLVTLLSLLLGVPLAWL-LARTD---FPGRRLLRWLLLLPLALppyvvalawIALFGPNGLLNtllralFGL 131

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2046765938  84 DIPA---FTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQA 141
Cdd:COG1178   132 EPPDiygLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLL 192
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 12-171 7.63e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 36.52  E-value: 7.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  12 SHLFVSGLLMTLKLTFLAVTIGVILGLIVALIkmssIKPISFIGASYV----EIIRGTP-LLVQLLLIY--------NGL 78
Cdd:PRK15050   68 SPDFRGALLTTLQIAFASTAGCLVLGVLLALV----LAFVPFPGASLVgrfiDTFVAFPsFLITLAFTFlygsagsvNIA 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  79 MQ--FGIDIPAFT-----AGVSALAInsAAYVAEIIR---AGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPA 148
Cdd:PRK15050  144 LQrlFGLEAPPLDflyspGGVILAEI--TFYTPFVVRpllAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAG 221

                         170       180
                  ....*....|....*....|...
gi 2046765938 149 LGNEFIVMLKESAIISVIGFADL 171
Cdd:PRK15050  222 GSLCLLLTLNEFGIVLFTGAKDV 244
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
14-167 8.94e-03

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 36.25  E-value: 8.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  14 LFVSGLLMTLKLTFLAVTIGVILGLIVALI-------KMSSIKPISFIGASYVEIIRGTPLLVQLL-LIYNGLMQFGIDI 85
Cdd:PRK10782    8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLlyvtrpgQIIANAKLYRTLSALVNIFRSIPFIILLVwMIPFTRVIVGTSI 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046765938  86 pAFTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIISV 165
Cdd:PRK10782   88 -GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGA 166


                  ..
gi 2046765938 166 IG 167
Cdd:PRK10782  167 VG 168
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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