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Conserved domains on  [gi|2048586021|ref|WP_215157180|]
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sigma factor G inhibitor Gin [Paenibacillus sp. ISL-20]

Protein Classification

sigma factor G inhibitor Gin( domain architecture ID 18824107)

sigma factor G inhibitor Gin is an anti-sigma-G factor that prevents premature activation of sigma-G factor in the forespore

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CsfB COG5865
Forespore-specific anti-sigma-G factor CsfB/Gin [Cell cycle control, cell division, chromosome ...
 1-61 6.45e-21

Forespore-specific anti-sigma-G factor CsfB/Gin [Cell cycle control, cell division, chromosome partitioning, Transcription];


:

Pssm-ID: 444567  Cd Length: 63  Bit Score: 76.55  E-value: 6.45e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048586021  1 MEELTEHVCIICNQTKTDGITIVSQFVCEECESEIVHTSAEDAKYHFFIRQLKQIAMPKNA 61
Cdd:COG5865    2 EEVQKKEKCIICEQEKEEGIHILGKFICESCEKEIVKTDTDDPKYPFYVKKLKKIWLSKLY 62
 
Name Accession Description Interval E-value
CsfB COG5865
Forespore-specific anti-sigma-G factor CsfB/Gin [Cell cycle control, cell division, chromosome ...
 1-61 6.45e-21

Forespore-specific anti-sigma-G factor CsfB/Gin [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444567  Cd Length: 63  Bit Score: 76.55  E-value: 6.45e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048586021  1 MEELTEHVCIICNQTKTDGITIVSQFVCEECESEIVHTSAEDAKYHFFIRQLKQIAMPKNA 61
Cdd:COG5865    2 EEVQKKEKCIICEQEKEEGIHILGKFICESCEKEIVKTDTDDPKYPFYVKKLKKIWLSKLY 62
Gin pfam10764
Inhibitor of sigma-G Gin; Gin allows sigma-F to delay late forespore transcription by ...
 9-52 1.15e-16

Inhibitor of sigma-G Gin; Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB.


Pssm-ID: 463185  Cd Length: 44  Bit Score: 65.30  E-value: 1.15e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 2048586021  9 CIICNQTKTDGITIVSQFVCEECESEIVHTSAEDAKYHFFIRQL 52
Cdd:pfam10764  1 CIICEKEKPEGIHINGKFICEECEKEIVNTDTDDPKYEFYKNKL 44
 
Name Accession Description Interval E-value
CsfB COG5865
Forespore-specific anti-sigma-G factor CsfB/Gin [Cell cycle control, cell division, chromosome ...
 1-61 6.45e-21

Forespore-specific anti-sigma-G factor CsfB/Gin [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444567  Cd Length: 63  Bit Score: 76.55  E-value: 6.45e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048586021  1 MEELTEHVCIICNQTKTDGITIVSQFVCEECESEIVHTSAEDAKYHFFIRQLKQIAMPKNA 61
Cdd:COG5865    2 EEVQKKEKCIICEQEKEEGIHILGKFICESCEKEIVKTDTDDPKYPFYVKKLKKIWLSKLY 62
Gin pfam10764
Inhibitor of sigma-G Gin; Gin allows sigma-F to delay late forespore transcription by ...
 9-52 1.15e-16

Inhibitor of sigma-G Gin; Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB.


Pssm-ID: 463185  Cd Length: 44  Bit Score: 65.30  E-value: 1.15e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 2048586021  9 CIICNQTKTDGITIVSQFVCEECESEIVHTSAEDAKYHFFIRQL 52
Cdd:pfam10764  1 CIICEKEKPEGIHINGKFICEECEKEIVNTDTDDPKYEFYKNKL 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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