|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
13-415 |
1.96e-152 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 438.82 E-value: 1.96e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 13 VVIIDHEGRIdtVSINNKQTSHLSLFQENM-------LFEEVQWKKVFTSAPSGATQLLSTY-EGRTYLFTLHLVQANSY 84
Cdd:COG3829 24 IIVVDADGRI--TYVNRAAERILGLPREEVigknvteLIPNSPLLEVLKTGKPVTGVIQKTGgKGKTVIVTAIPIFEDGE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 85 ----------INQIVTLANISQNMFNPYFNENQHKTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFI 154
Cdd:COG3829 102 vigavetfrdITELKRLERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAI 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 155 HRTSTRSKQPFISVNCGAIPESLIESELFGYEEGTFTGGKKGGKVGLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENA 234
Cdd:COG3829 182 HNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 235 VRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLR-KEI 313
Cdd:COG3829 262 VRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNiKGI 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 314 NDEVKQELIQYKWPGNIRELENTIERIVvtNMTEKEVLEEK----NIRENGWSFSPKAPISLKEAKRQVEKELILKAYSE 389
Cdd:COG3829 342 SPEALELLLAYDWPGNVRELENVIERAV--VLSEGDVITPEhlpeYLLEEAEAASAAEEGSLKEALEEVEKELIEEALEK 419
|
410 420
....*....|....*....|....*..
gi 2054862053 390 YKST-YKVAEVLQVDQSTISKKLKVYK 415
Cdd:COG3829 420 TGGNkSKAAKALGISRSTLYRKLKKYG 446
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
114-415 |
9.61e-95 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 295.65 E-value: 9.61e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 114 IMESSAMKRIGK---IIETIA---HVGST---VLLLGESGVGKSQIAKFIHRTSTRsKQPFISVNCGAIPESLIESELFG 184
Cdd:NF041552 261 ISEDSFGKIIGKskkIIKKIEiakQVAKTnssVLITGESGTGKEVFARAIHQASGR-KGPFVPVNCSAIPEELFESEFFG 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 185 YEEGTFTGGKKGGKVGLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQ 264
Cdd:NF041552 340 YEEGAFTGALKKGKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKE 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 265 KLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLR-KEINDEVKQELIQYKWPGNIRELENTIERIVV- 342
Cdd:NF041552 420 GKFREDLYYRLNVVEIELPPLRERKEDIPLLINYFLKEICKENNKEiPKIDKEVYDILQNYKWKGNIRELKNTIEHLVVl 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 343 -------TNMTEKEVLEEKNIRENgwsFSPKAPISLKEAKRQVEKELILKAYSEYK-STYKVAEVLQVDQSTISKKLKVY 414
Cdd:NF041552 500 skngtitKDSIPEYILESVKKKED---EEGDYPLDLNKAVEKLEIDTIKKALEMSNgNKAKAAKLLNIPRSTLYYKLKQY 576
|
.
gi 2054862053 415 K 415
Cdd:NF041552 577 G 577
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
104-405 |
2.00e-94 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 292.85 E-value: 2.00e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 104 NENQHKTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELF 183
Cdd:PRK05022 180 RQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELF 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 184 GYEEGTFTGGKKGGKVGlFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVE 263
Cdd:PRK05022 260 GHVKGAFTGAISNRSGK-FELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVR 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 264 QKLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLRK-EINDEVKQELIQYKWPGNIRELENTI----- 337
Cdd:PRK05022 339 AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSlRLSPAAQAALLAYDWPGNVRELEHVIsraal 418
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2054862053 338 -------ERIVV--TNMTEKEVLEEKNIRENGWSFSPKAPISLKEAKRQVEKELILKAYSEYKSTY-KVAEVLQVDQS 405
Cdd:PRK05022 419 larargaGRIVTleAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIRQALAQHQGNWaAAARALELDRA 496
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
104-339 |
8.62e-92 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 286.61 E-value: 8.62e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 104 NENQHKTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELF 183
Cdd:TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELF 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 184 GYEEGTFTGGKKGGKVGlFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVE 263
Cdd:TIGR01817 269 GHEKGAFTGAIAQRKGR-FELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVA 347
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2054862053 264 QKLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLRKEINDEVKQELIQYKWPGNIRELENTIER 339
Cdd:TIGR01817 348 KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLER 423
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
113-281 |
8.39e-90 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 268.89 E-value: 8.39e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 113 LIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEGTFTG 192
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 193 GKKGGKVgLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFREDLF 272
Cdd:pfam00158 81 ADSDRKG-LFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*....
gi 2054862053 273 YRLNVVPLT 281
Cdd:pfam00158 160 YRLNVIPIE 168
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
134-284 |
5.45e-20 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 86.05 E-value: 5.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 134 GSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEgtftggkKGGKVGLFEAAHKGTIFLD 213
Cdd:cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFL-------VRLLFELAEKAKPGVLFID 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2054862053 214 EIAEFPLNLQAKLLGVLQEnavrkVGSTEEKKVDVRVIAATNKNLQElveqkLFREDLFYRLNVVpLTIPP 284
Cdd:cd00009 92 EIDSLSRGAQNALLRVLET-----LNDLRIDRENVRVIGATNRPLLG-----DLDRALYDRLDIR-IVIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
134-275 |
3.75e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.93 E-value: 3.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 134 GSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIES-ELFGYEEGTFTGGKKGGKVGLFEAAHK---GT 209
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlLLIIVGGKKASGSGELRLRLALALARKlkpDV 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2054862053 210 IFLDEIAEFPLNLQAKLLGVLQENAVRKVgstEEKKVDVRVIAATN--KNLQELVEQKLFREDLFYRL 275
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLLEELRLLLL---LKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
13-415 |
1.96e-152 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 438.82 E-value: 1.96e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 13 VVIIDHEGRIdtVSINNKQTSHLSLFQENM-------LFEEVQWKKVFTSAPSGATQLLSTY-EGRTYLFTLHLVQANSY 84
Cdd:COG3829 24 IIVVDADGRI--TYVNRAAERILGLPREEVigknvteLIPNSPLLEVLKTGKPVTGVIQKTGgKGKTVIVTAIPIFEDGE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 85 ----------INQIVTLANISQNMFNPYFNENQHKTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFI 154
Cdd:COG3829 102 vigavetfrdITELKRLERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAI 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 155 HRTSTRSKQPFISVNCGAIPESLIESELFGYEEGTFTGGKKGGKVGLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENA 234
Cdd:COG3829 182 HNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 235 VRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLR-KEI 313
Cdd:COG3829 262 VRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNiKGI 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 314 NDEVKQELIQYKWPGNIRELENTIERIVvtNMTEKEVLEEK----NIRENGWSFSPKAPISLKEAKRQVEKELILKAYSE 389
Cdd:COG3829 342 SPEALELLLAYDWPGNVRELENVIERAV--VLSEGDVITPEhlpeYLLEEAEAASAAEEGSLKEALEEVEKELIEEALEK 419
|
410 420
....*....|....*....|....*..
gi 2054862053 390 YKST-YKVAEVLQVDQSTISKKLKVYK 415
Cdd:COG3829 420 TGGNkSKAAKALGISRSTLYRKLKKYG 446
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
111-414 |
9.04e-124 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 365.06 E-value: 9.04e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 111 DELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEGTF 190
Cdd:COG2204 131 SGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGAF 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 191 TGGKKGGKVgLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFRED 270
Cdd:COG2204 211 TGAVARRIG-KFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRFRED 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 271 LFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLRKEINDEVKQELIQYKWPGNIRELENTIERIVVtnMTEKEV 350
Cdd:COG2204 290 LYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVKLSPEALEALLAYDWPGNVRELENVIERAVI--LADGEV 367
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2054862053 351 LEEKNirengwsfspkapisLKEAKRQVEKELILKAYSEYK-STYKVAEVLQVDQSTISKKLKVY 414
Cdd:COG2204 368 ITAED---------------LPEALEEVERELIERALEETGgNVSRAAELLGISRRTLYRKLKKY 417
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
2-415 |
7.32e-106 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 325.70 E-value: 7.32e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 2 RNSSIGTCESIVVIIDHEGRIdtVSINNKQTSHLSLFQENML---FEEV---QWKKVFTSAPSGATQL--LSTYEGRTYL 73
Cdd:COG3284 218 LPEFLGSLSEGLLAFDEDGRI--VAANRAARRLLGLADAALLgrpLEELfglDLEALPDGARRAPASPrpLRLRDGRRLG 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 74 FTLHLVQANSYINQIVTLANISQNMfnpyfnenqhktDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKF 153
Cdd:COG3284 296 ALLRLRPARRAARAAPAGAPAPAAL------------AALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 154 IHRTSTRSKQPFISVNCGAIPESLIESELFGYEEGTFTGGKKGGKVGLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQEN 233
Cdd:COG3284 364 IHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQER 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 234 AVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFREDLFYRLNVVPLTIPPLREREkDIHILIDHFLFKYNTKyHLRKEI 313
Cdd:COG3284 444 EVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRERE-DLPALIEHLLRELAAG-RGPLRL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 314 NDEVKQELIQYKWPGNIRELENTIERIVVtnMTEKEVLEEKN----IRENGWSFSPKAPISLkEAKRQVEKELILKAYSE 389
Cdd:COG3284 522 SPEALALLAAYPWPGNVRELRNVLRTALA--LADGGVITVEDlpdeLRAELAAAAPAAAAPL-TSLEEAERDAILRALRA 598
|
410 420
....*....|....*....|....*....
gi 2054862053 390 Y---KStyKVAEVLQVDQSTISKKLKVYK 415
Cdd:COG3284 599 CggnVS--AAARALGISRSTLYRKLKRYG 625
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
114-415 |
9.61e-95 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 295.65 E-value: 9.61e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 114 IMESSAMKRIGK---IIETIA---HVGST---VLLLGESGVGKSQIAKFIHRTSTRsKQPFISVNCGAIPESLIESELFG 184
Cdd:NF041552 261 ISEDSFGKIIGKskkIIKKIEiakQVAKTnssVLITGESGTGKEVFARAIHQASGR-KGPFVPVNCSAIPEELFESEFFG 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 185 YEEGTFTGGKKGGKVGLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQ 264
Cdd:NF041552 340 YEEGAFTGALKKGKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKE 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 265 KLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLR-KEINDEVKQELIQYKWPGNIRELENTIERIVV- 342
Cdd:NF041552 420 GKFREDLYYRLNVVEIELPPLRERKEDIPLLINYFLKEICKENNKEiPKIDKEVYDILQNYKWKGNIRELKNTIEHLVVl 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 343 -------TNMTEKEVLEEKNIRENgwsFSPKAPISLKEAKRQVEKELILKAYSEYK-STYKVAEVLQVDQSTISKKLKVY 414
Cdd:NF041552 500 skngtitKDSIPEYILESVKKKED---EEGDYPLDLNKAVEKLEIDTIKKALEMSNgNKAKAAKLLNIPRSTLYYKLKQY 576
|
.
gi 2054862053 415 K 415
Cdd:NF041552 577 G 577
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
104-405 |
2.00e-94 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 292.85 E-value: 2.00e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 104 NENQHKTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELF 183
Cdd:PRK05022 180 RQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELF 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 184 GYEEGTFTGGKKGGKVGlFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVE 263
Cdd:PRK05022 260 GHVKGAFTGAISNRSGK-FELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVR 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 264 QKLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLRK-EINDEVKQELIQYKWPGNIRELENTI----- 337
Cdd:PRK05022 339 AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSlRLSPAAQAALLAYDWPGNVRELEHVIsraal 418
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2054862053 338 -------ERIVV--TNMTEKEVLEEKNIRENGWSFSPKAPISLKEAKRQVEKELILKAYSEYKSTY-KVAEVLQVDQS 405
Cdd:PRK05022 419 larargaGRIVTleAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIRQALAQHQGNWaAAARALELDRA 496
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
104-339 |
8.62e-92 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 286.61 E-value: 8.62e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 104 NENQHKTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELF 183
Cdd:TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELF 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 184 GYEEGTFTGGKKGGKVGlFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVE 263
Cdd:TIGR01817 269 GHEKGAFTGAIAQRKGR-FELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVA 347
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2054862053 264 QKLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLRKEINDEVKQELIQYKWPGNIRELENTIER 339
Cdd:TIGR01817 348 KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLER 423
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
103-414 |
1.31e-91 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 285.54 E-value: 1.31e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 103 FNENQHKT-DELIMESSAMKrigKIIET---IAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLI 178
Cdd:COG3283 195 LQVNDDSGfDHIVASSPKMR---QVIRQakkMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVA 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 179 ESELFGYEEGTFtGGKKGGKVGLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNL 258
Cdd:COG3283 272 ESELFGYAPGAF-GNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 259 QELVEQKLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLRK-EINDEVKQELIQYKWPGNIRELENTI 337
Cdd:COG3283 351 AELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRpRLSPDLVDFLQSYPWPGNVRQLENAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 338 ERIVvtNMTEKEVLEEKNIR----ENGWSFS-PKAPISLKEAKRQVEKELILKAYSEYKSTYKVAEVLQVDQSTISKKLK 412
Cdd:COG3283 431 YRAV--SLLEGDELTPEDLQlpeyAASAGLLdDLLEGSLDEIVKRFERSLLRRLYPSYPSTRKLAKRLGVSHTAIANKLR 508
|
..
gi 2054862053 413 VY 414
Cdd:COG3283 509 EY 510
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
113-281 |
8.39e-90 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 268.89 E-value: 8.39e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 113 LIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEGTFTG 192
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 193 GKKGGKVgLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFREDLF 272
Cdd:pfam00158 81 ADSDRKG-LFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*....
gi 2054862053 273 YRLNVVPLT 281
Cdd:pfam00158 160 YRLNVIPIE 168
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
113-407 |
2.94e-89 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 277.40 E-value: 2.94e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 113 LIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEGTFTG 192
Cdd:TIGR02915 141 LITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 193 GKKGGKVGLfEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFREDLF 272
Cdd:TIGR02915 221 AVKQTLGKI-EYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLF 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 273 YRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLR-KEINDEVKQELIQYKWPGNIRELENTIERIVVtnMTEKEVL 351
Cdd:TIGR02915 300 YRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKtKGFTDDALRALEAHAWPGNVRELENKVKRAVI--MAEGNQI 377
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2054862053 352 EEKNIrenGWSFSPKAP----ISLKEAKRQVEKELILKAYSEYK-STYKVAEVLQVDQSTI 407
Cdd:TIGR02915 378 TAEDL---GLDARERAEtpleVNLREVRERAEREAVRKAIARVDgNIARAAELLGITRPTL 435
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
109-386 |
3.57e-87 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 272.49 E-value: 3.57e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 109 KTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEG 188
Cdd:PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 189 TFTGGKKGGKVgLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFR 268
Cdd:PRK11361 221 AFTGAQTLRQG-LFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 269 EDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLR-KEINDEVKQELIQYKWPGNIRELENTIERIVVTNmTE 347
Cdd:PRK11361 300 EDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDiIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN-SG 378
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2054862053 348 KEVLEE---KNIRE-----NGWSFSPKAPISLKEAKRQVEKELILKA 386
Cdd:PRK11361 379 PIIFSEdlpPQIRQpvcnaGEVKTAPVGERNLKEEIKRVEKRIIMEV 425
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
88-412 |
4.16e-84 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 266.73 E-value: 4.16e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 88 IVTLANISQNMFNPYFNENQHKT----DELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQ 163
Cdd:TIGR02329 185 VARATRLRQAATLRSATRNQLRTryrlDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDF 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 164 PFISVNCGAIPESLIESELFGYEEGTFTGGKKGGKVGLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEE 243
Cdd:TIGR02329 265 PFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEP 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 244 KKVDVRVIAATNKNLQELVEQKLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHL-----RKEINDEVK 318
Cdd:TIGR02329 345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLpdseaAAQVLAGVA 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 319 QELIQYKWPGNIRELENTIERIVVTNMTEK---------EVLEEKNIRENGWSFSPkaPISLKEAKRqVEKELI---LKA 386
Cdd:TIGR02329 425 DPLQRYPWPGNVRELRNLVERLALELSAMPagaltpdvlRALAPELAEASGKGKTS--ALSLRERSR-VEALAVraaLER 501
|
330 340
....*....|....*....|....*.
gi 2054862053 387 YSEYKSTykVAEVLQVDQSTISKKLK 412
Cdd:TIGR02329 502 FGGDRDA--AAKALGISRTTLWRRLK 525
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
107-412 |
1.75e-81 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 258.13 E-value: 1.75e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 107 QHKTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYE 186
Cdd:TIGR01818 130 AEDSAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHE 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 187 EGTFTGGKKGGKVGlFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKL 266
Cdd:TIGR01818 210 KGAFTGANTRRQGR-FEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGK 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 267 FREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHL-RKEINDEVKQELIQYKWPGNIRELENTIERIVVT-- 343
Cdd:TIGR01818 289 FREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVePKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMas 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 344 -------------NMTEKEVLEEKNIRENGWS----------FSPKAPISLKEAKRQVEKELI---LKAYSEYKStyKVA 397
Cdd:TIGR01818 369 gdevlvsdlpaelALTGRPASAPDSDGQDSWDealeawakqaLSRGEQGLLDRALPEFERPLLeaaLQHTRGHKQ--EAA 446
|
330
....*....|....*
gi 2054862053 398 EVLQVDQSTISKKLK 412
Cdd:TIGR01818 447 ALLGWGRNTLTRKLK 461
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
108-340 |
4.34e-80 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 256.57 E-value: 4.34e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 108 HKTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRT--------STRSKQPFISVNCGAIPESLIE 179
Cdd:PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREyfarhdarQGKKSHPFVAVNCGAIAESLLE 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 180 SELFGYEEGTFTGGKKGGKVGLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQ 259
Cdd:PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 260 ELVEQKLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLRkeINDEVKQELIQ-------YKWPGNIRE 332
Cdd:PRK15424 376 EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAP--FSAALRQGLQQcetlllhYDWPGNVRE 453
|
....*...
gi 2054862053 333 LENTIERI 340
Cdd:PRK15424 454 LRNLMERL 461
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
125-414 |
4.17e-78 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 245.14 E-value: 4.17e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 125 KIIETIAHVGSTVLLlGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESelfgyeegtftggkkggkvglfea 204
Cdd:COG3604 107 RLLETLASLAAVAIL-GETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES------------------------ 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 205 ahkgtifldeiaefplnlqakllgvLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFREDLFYRLNVVPLTIPP 284
Cdd:COG3604 162 -------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPP 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 285 LREREKDIHILIDHFLFKYNTKYHLR-KEINDEVKQELIQYKWPGNIRELENTIERIVVtnMTEKEVLEEKNIrengwsf 363
Cdd:COG3604 217 LRERREDIPLLAEHFLEKFSRRLGKPiLRLSPEALEALMAYPWPGNVRELENVIERAVI--LAEGGVLDADDL------- 287
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2054862053 364 spkaPISLKEAKRQVEKELILKAYSEYKST-YKVAEVLQVDQSTISKKLKVY 414
Cdd:COG3604 288 ----APGSREALEEVEREHILEALERTGGNiAGAARLLGLTPSTLRSRMKKL 335
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
111-414 |
1.83e-72 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 236.12 E-value: 1.83e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 111 DELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEGTF 190
Cdd:PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAY 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 191 TGGKKGGKVgLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFRED 270
Cdd:PRK10820 284 PNALEGKKG-FFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFRED 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 271 LFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHL-RKEINDEVKQELIQYKWPGNIRELENTIERIvvtnMTEKE 349
Cdd:PRK10820 363 LYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVpRPKLAADLNTVLTRYGWPGNVRQLKNAIYRA----LTQLE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 350 ---------VLEEknirengwsFSPKAPI-------SLKEAKRQVEKELILKAYSEYKSTYKVAEVLQVDQSTISKKLKV 413
Cdd:PRK10820 439 gyelrpqdiLLPD---------YDAAVAVgedamegSLDEITSRFERSVLTRLYRNYPSTRKLAKRLGVSHTAIANKLRE 509
|
.
gi 2054862053 414 Y 414
Cdd:PRK10820 510 Y 510
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
104-389 |
5.12e-70 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 233.57 E-value: 5.12e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 104 NENQHKTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELF 183
Cdd:PRK15429 369 NNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 184 GYEEGTFTGGKKGGKVGlFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVE 263
Cdd:PRK15429 449 GHERGAFTGASAQRIGR-FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 264 QKLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKyhLRKEIND---EVKQELIQYKWPGNIRELENTIERI 340
Cdd:PRK15429 528 DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARR--MGRNIDSipaETLRTLSNMEWPGNVRELENVIERA 605
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 2054862053 341 VVtnMTEKEVLeEKNIRENGWSFSPKAPISLKEAKR-QVEKELILKAYSE 389
Cdd:PRK15429 606 VL--LTRGNVL-QLSLPDITLPEPETPPAATVVAQEgEDEYQLIVRVLKE 652
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
113-386 |
3.71e-69 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 225.29 E-value: 3.71e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 113 LIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEGTFTG 192
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 193 GKKGGKVGLFEAaHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFREDLF 272
Cdd:PRK10365 221 ADKRREGRFVEA-DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 273 YRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYhlRKEINDEVKQE---LIQYKWPGNIRELENTIERIVVtnMTEKE 349
Cdd:PRK10365 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERN--RKAVKGFTPQAmdlLIHYDWPGNIRELENAVERAVV--LLTGE 375
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2054862053 350 VLEEKNIrengwsfsPKA----PISLKEAKR-----QVEKELILKA 386
Cdd:PRK10365 376 YISEREL--------PLAiastPIPLGQSQDiqplvEVEKEVILAA 413
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
111-341 |
1.95e-68 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 223.56 E-value: 1.95e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 111 DELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEGTF 190
Cdd:PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAF 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 191 TGGKKGGKVgLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFRED 270
Cdd:PRK15115 214 TGAVSNREG-LFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRED 292
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2054862053 271 LFYRLNVVPLTIPPLREREKDIHILIDHfLFKYNTKYH---LRKEINDEVKQeLIQYKWPGNIRELENTIERIV 341
Cdd:PRK15115 293 LYYRLNVVSLKIPALAERTEDIPLLANH-LLRQAAERHkpfVRAFSTDAMKR-LMTASWPGNVRQLVNVIEQCV 364
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
110-412 |
1.08e-65 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 217.05 E-value: 1.08e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 110 TDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEGT 189
Cdd:PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGA 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 190 FTGGKKGGKVGlFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFRE 269
Cdd:PRK10923 217 FTGANTIRQGR-FEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 270 DLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLR-KEINDEVKQELIQYKWPGNIRELENTIERIVVTnMTEK 348
Cdd:PRK10923 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEaKLLHPETEAALTRLAWPGNVRQLENTCRWLTVM-AAGQ 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 349 EVLE--------EKNIRENGWSFSPKAPIS-----------------LKEAKRQVEKELILKAYSEYKS-TYKVAEVLQV 402
Cdd:PRK10923 375 EVLIqdlpgelfESTVPESTSQMQPDSWATllaqwadralrsghqnlLSEAQPELERTLLTTALRHTQGhKQEAARLLGW 454
|
330
....*....|
gi 2054862053 403 DQSTISKKLK 412
Cdd:PRK10923 455 GRNTLTRKLK 464
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
107-402 |
4.65e-62 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 203.36 E-value: 4.65e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 107 QHKTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYE 186
Cdd:PRK11608 2 AEYKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 187 EGTFTGGKKGGKVGlFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKL 266
Cdd:PRK11608 82 AGAFTGAQKRHPGR-FERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 267 FREDLFYRL--NVVPLtiPPLREREKDIHILIDHFLFKyntkyhLRKEIN--------DEVKQELIQYKWPGNIRELENT 336
Cdd:PRK11608 161 FRADLLDRLafDVVQL--PPLRERQSDIMLMAEHFAIQ------MCRELGlplfpgftERARETLLNYRWPGNIRELKNV 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2054862053 337 IERIVVTNMTEKEVLE------------EKNIRENGWSFSPKAPISLKEAKRQVEKELILKAYSEYK-STYKVAEVLQV 402
Cdd:PRK11608 233 VERSVYRHGTSEYPLDniiidpfkrrpaEEAIAVSETTSLPTLPLDLREWQHQQEKELLQRSLQQAKfNQKRAAELLGL 311
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
68-414 |
1.65e-59 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 204.53 E-value: 1.65e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 68 EGRTYLFTLHLVQansYINQIVT--LANISqnmfnpyfnenqHKTDELIMESSAMKRIGKIIETIAHVGSTVLLLGESGV 145
Cdd:PRK11388 295 QGTSFILLLHPVE---QMRQLMTsqLGKVS------------HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGV 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 146 GKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEGtftgGKKGGKVGLFEAAHKGTIFLDEIAEFPLNLQAK 225
Cdd:PRK11388 360 GKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRT----DSENGRLSKFELAHGGTLFLEKVEYLSPELQSA 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 226 LLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFREDLFYRLNVVPLTIPPLREREKDIHILIDHFLFKYNT 305
Cdd:PRK11388 436 LLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEK 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 306 KYHLRKEINDEVKQELIQYKWPGNIRELENTIERIVvtNMTEKEVLEEKNIRENGWSFSP---------KAPISLKEAkr 376
Cdd:PRK11388 516 RFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLA--LSSDNGRIRLSDLPEHLFTEQAtddvsatrlSTSLSLAEL-- 591
|
330 340 350
....*....|....*....|....*....|....*....
gi 2054862053 377 qvEKELILKAYSEYK-STYKVAEVLQVDQSTISKKLKVY 414
Cdd:PRK11388 592 --EKEAIINAAQVCGgRIQEMAALLGIGRTTLWRKMKQH 628
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
125-339 |
3.52e-33 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 130.72 E-value: 3.52e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 125 KIIETIAHVG--ST--VLLLGESGVGKSQIAKFIH---RTSTRSKQPFISVNC------GAIpeslieSELFGYEEGTFT 191
Cdd:COG4650 195 RLIEQIERVAirSRapILLTGPTGAGKSQLARRIYelkKARHQVSGRFVEVNCatlrgdGAM------SALFGHVKGAFT 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 192 gGKKGGKVGLFEAAHKGTIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKVDVRVIAATNKNLQELVEQKLFREDL 271
Cdd:COG4650 269 -GAVSDRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDL 347
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2054862053 272 FYRLNVVPLTIPPLREREKDIHILIDHFLFKYNTKYHLRKEINDEVKQELIQY------KWPGNIRELENTIER 339
Cdd:COG4650 348 LARINLWTFRLPGLAERREDIEPNLDYELARFAREQGRRVRFNKEARARYLAFatspeaLWSGNFRDLNASVTR 421
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
117-285 |
5.30e-21 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 88.55 E-value: 5.30e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 117 SSAMKRIGKIIETIAHVGSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESelfgyeegtftggkkg 196
Cdd:pfam14532 4 SAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ---------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 197 gkvglfeaAHKGTIFLDEIAEFPLNLQAKLLGVLQENavrkvgsteeKKVDVRVIAATNKNLQELVEQKLFREDLFYRLN 276
Cdd:pfam14532 68 --------AKGGTLYLKDIADLSKALQKGLLLLLAKA----------EGYRVRLVCTSSKDLPQLAAAGLFDEQLYFELS 129
|
....*....
gi 2054862053 277 VVPLTIPPL 285
Cdd:pfam14532 130 ALRLHVPPL 138
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
134-284 |
5.45e-20 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 86.05 E-value: 5.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 134 GSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIESELFGYEEgtftggkKGGKVGLFEAAHKGTIFLD 213
Cdd:cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFL-------VRLLFELAEKAKPGVLFID 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2054862053 214 EIAEFPLNLQAKLLGVLQEnavrkVGSTEEKKVDVRVIAATNKNLQElveqkLFREDLFYRLNVVpLTIPP 284
Cdd:cd00009 92 EIDSLSRGAQNALLRVLET-----LNDLRIDRENVRVIGATNRPLLG-----DLDRALYDRLDIR-IVIPL 151
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
137-337 |
6.11e-17 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 83.23 E-value: 6.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 137 VLLLGESGVGKSQIAKFIHRTSTRSKQ-----PFISVNCGAI---PEsLIESELFGYEEGTFTgGKKGGKVGLFEAAHKG 208
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYEYAIEIGVlpedaPFVVFNCADYannPQ-LLMSQLFGYVKGAFT-GADKDKEGLIEKADGG 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 209 TIFLDEIAEFPLNLQAKLLGVLQENAVRKVGSTE-EKKVDVRVIAATNKNLQELVEQKLFRedlfyRLNVVpLTIPPLRE 287
Cdd:COG1221 211 ILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETEkTRKANVRIIFATTEDPESSLLKTFLR-----RIPMV-IKLPSLEE 284
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2054862053 288 R---EKDihILIDHFLFKYNTKYHLRKEINDEVKQELIQYKWPGNIRELENTI 337
Cdd:COG1221 285 RsleERL--ELIKHFFKEEAKRLNKPIKVSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
134-275 |
3.75e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.93 E-value: 3.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 134 GSTVLLLGESGVGKSQIAKFIHRTSTRSKQPFISVNCGAIPESLIES-ELFGYEEGTFTGGKKGGKVGLFEAAHK---GT 209
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlLLIIVGGKKASGSGELRLRLALALARKlkpDV 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2054862053 210 IFLDEIAEFPLNLQAKLLGVLQENAVRKVgstEEKKVDVRVIAATN--KNLQELVEQKLFREDLFYRL 275
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLLEELRLLLL---LKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
137-255 |
7.74e-08 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 51.14 E-value: 7.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 137 VLLLGESGVGKSQIAK-FIHRTSTRSKQPFisvncgAIPESLIESELFG---YEEGTFtggkKGGKVGLFEAAHKG-TIF 211
Cdd:pfam07728 2 VLLVGPPGTGKTELAErLAAALSNRPVFYV------QLTRDTTEEDLFGrrnIDPGGA----SWVDGPLVRAAREGeIAV 71
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2054862053 212 LDEIAEFPLNLQAKLLGVLQENAVRKVGSTEEKKV---DVRVIAATN 255
Cdd:pfam07728 72 LDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMN 118
|
|
| HTH_50 |
pfam18024 |
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription ... |
369-414 |
3.96e-07 |
|
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription factor whose major function is to control the expression of genes important in the biosynthesis and transport of aromatic amino acids. This entry represents the C-terminal helix-turn-helix DNA-binding domain of TyrR and related proteins.
Pssm-ID: 407862 [Multi-domain] Cd Length: 50 Bit Score: 46.64 E-value: 3.96e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 2054862053 369 ISLKEAKRQVEKELILKAYSEYKSTYKVAEVLQVDQSTISKKLKVY 414
Cdd:pfam18024 2 MSLKEYVSYIERELIGAAYENYKSARKVAKALGLSHTTIANKMKRY 47
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
137-255 |
1.44e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 38.34 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 137 VLLLGESGVGKSQIAKFIhrtSTRSKQPFISVNCGAI-PESLIESElfgyeegtftggkkGGKVGLFEAAHKGT---IFL 212
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAV---AKELGAPFIEISGSELvSKYVGESE--------------KRLRELFEAAKKLApcvIFI 63
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2054862053 213 DEI-----------AEFPLNLQAKLLGVLQEnavrkvgsTEEKKVDVRVIAATN 255
Cdd:pfam00004 64 DEIdalagsrgsggDSESRRVVNQLLTELDG--------FTSSNSKVIVIAATN 109
|
|
| MCM |
pfam00493 |
MCM P-loop domain; |
137-161 |
4.40e-03 |
|
MCM P-loop domain;
Pssm-ID: 459830 [Multi-domain] Cd Length: 224 Bit Score: 38.28 E-value: 4.40e-03
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
137-306 |
8.82e-03 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 38.35 E-value: 8.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 137 VLLLGESGVGKSQIAKFIhrtSTRSKQPFISVNCgaiPESLieSELFGYEEgtftggkkGGKVGLFEAAHKGT---IFLD 213
Cdd:TIGR01243 490 VLLFGPPGTGKTLLAKAV---ATESGANFIAVRG---PEIL--SKWVGESE--------KAIREIFRKARQAApaiIFFD 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054862053 214 EIAEFPLNLQAKLLGVLQENAVRKVgSTE----EKKVDVRVIAATNKnlQELVEQKLFREDLFYRLNVVPltiPPLRERE 289
Cdd:TIGR01243 554 EIDAIAPARGARFDTSVTDRIVNQL-LTEmdgiQELSNVVVIAATNR--PDILDPALLRPGRFDRLILVP---PPDEEAR 627
|
170
....*....|....*..
gi 2054862053 290 KDIhilidhflFKYNTK 306
Cdd:TIGR01243 628 KEI--------FKIHTR 636
|
|
| |
