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Conserved domains on  [gi|2067781653|ref|WP_218276733|]
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Wadjet anti-phage system protein JetA family protein, partial [Pseudomonas sp. FW215-R3]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5716 super family cl40981
Family of unknown function (DUF5716); This is a family of unknown function, mostly found in ...
 1-85 5.35e-09

Family of unknown function (DUF5716); This is a family of unknown function, mostly found in bacteria.


The actual alignment was detected with superfamily member pfam18982:

Pssm-ID: 465940  Cd Length: 433  Bit Score: 51.07  E-value: 5.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067781653   1 TRFNPFRFRASVVREAGRALRDALTVRALAEGLIREGRSADLDAAQKAVRADLAQILAVFEGLDNHLDAVDAVVARLERR 80
Cdd:pfam18982 184 TSDNPYRYRTEILELLRRWLEDEELLEKLAEEYAEEGRYKDEEEAEEDILDDLDRIERVFDNIDRRLEEIDRKHNRYTRA 263


                  ....*
gi 2067781653  81 IASAL 85
Cdd:pfam18982 264 AVTRI 268
 
Name Accession Description Interval E-value
DUF5716 pfam18982
Family of unknown function (DUF5716); This is a family of unknown function, mostly found in ...
 1-85 5.35e-09

Family of unknown function (DUF5716); This is a family of unknown function, mostly found in bacteria.


Pssm-ID: 465940  Cd Length: 433  Bit Score: 51.07  E-value: 5.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067781653   1 TRFNPFRFRASVVREAGRALRDALTVRALAEGLIREGRSADLDAAQKAVRADLAQILAVFEGLDNHLDAVDAVVARLERR 80
Cdd:pfam18982 184 TSDNPYRYRTEILELLRRWLEDEELLEKLAEEYAEEGRYKDEEEAEEDILDDLDRIERVFDNIDRRLEEIDRKHNRYTRA 263


                  ....*
gi 2067781653  81 IASAL 85
Cdd:pfam18982 264 AVTRI 268
 
Name Accession Description Interval E-value
DUF5716 pfam18982
Family of unknown function (DUF5716); This is a family of unknown function, mostly found in ...
 1-85 5.35e-09

Family of unknown function (DUF5716); This is a family of unknown function, mostly found in bacteria.


Pssm-ID: 465940  Cd Length: 433  Bit Score: 51.07  E-value: 5.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2067781653   1 TRFNPFRFRASVVREAGRALRDALTVRALAEGLIREGRSADLDAAQKAVRADLAQILAVFEGLDNHLDAVDAVVARLERR 80
Cdd:pfam18982 184 TSDNPYRYRTEILELLRRWLEDEELLEKLAEEYAEEGRYKDEEEAEEDILDDLDRIERVFDNIDRRLEEIDRKHNRYTRA 263


                  ....*
gi 2067781653  81 IASAL 85
Cdd:pfam18982 264 AVTRI 268
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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