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Conserved domains on  [gi|2068385654|ref|WP_218470303|]
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DUF5655 domain-containing protein [Nocardia iowensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5655 super family cl46271
Domain of unknown function (DUF5655); This family of proteins is found in bacteria, archaea, ...
 6-120 2.45e-13

Domain of unknown function (DUF5655); This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 122 and 304 amino acids in length.


The actual alignment was detected with superfamily member pfam18899:

Pssm-ID: 465903  Cd Length: 110  Bit Score: 61.23  E-value: 2.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2068385654   6 VENLFAGRPDALR-LFRSLAPRIEALG-AITTAVTKSQVSFGADRKFAWLwpTPRGKKVpedVLMLTLDmRKPVSDPLVL 83
Cdd:pfam18899   1 VDDQFSGKPAKLKpLYDALRERILELGpDVEEEPKKSYIAFKRKKTFAAV--PAKKGRL---RLGLALG-ELPSDPKISE 74

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2068385654  84 SVQeTYPGKWTHQIRVLDESVVEHVVnEGWLQEAYDF 120
Cdd:pfam18899  75 DVQ-NSGTRVTHHVRITSLSDIDEEL-LDLIKEAYEL 109
 
Name Accession Description Interval E-value
DUF5655 pfam18899
Domain of unknown function (DUF5655); This family of proteins is found in bacteria, archaea, ...
 6-120 2.45e-13

Domain of unknown function (DUF5655); This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 122 and 304 amino acids in length.


Pssm-ID: 465903  Cd Length: 110  Bit Score: 61.23  E-value: 2.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2068385654   6 VENLFAGRPDALR-LFRSLAPRIEALG-AITTAVTKSQVSFGADRKFAWLwpTPRGKKVpedVLMLTLDmRKPVSDPLVL 83
Cdd:pfam18899   1 VDDQFSGKPAKLKpLYDALRERILELGpDVEEEPKKSYIAFKRKKTFAAV--PAKKGRL---RLGLALG-ELPSDPKISE 74

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2068385654  84 SVQeTYPGKWTHQIRVLDESVVEHVVnEGWLQEAYDF 120
Cdd:pfam18899  75 DVQ-NSGTRVTHHVRITSLSDIDEEL-LDLIKEAYEL 109
 
Name Accession Description Interval E-value
DUF5655 pfam18899
Domain of unknown function (DUF5655); This family of proteins is found in bacteria, archaea, ...
 6-120 2.45e-13

Domain of unknown function (DUF5655); This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 122 and 304 amino acids in length.


Pssm-ID: 465903  Cd Length: 110  Bit Score: 61.23  E-value: 2.45e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2068385654   6 VENLFAGRPDALR-LFRSLAPRIEALG-AITTAVTKSQVSFGADRKFAWLwpTPRGKKVpedVLMLTLDmRKPVSDPLVL 83
Cdd:pfam18899   1 VDDQFSGKPAKLKpLYDALRERILELGpDVEEEPKKSYIAFKRKKTFAAV--PAKKGRL---RLGLALG-ELPSDPKISE 74

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2068385654  84 SVQeTYPGKWTHQIRVLDESVVEHVVnEGWLQEAYDF 120
Cdd:pfam18899  75 DVQ-NSGTRVTHHVRITSLSDIDEEL-LDLIKEAYEL 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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