|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10510 |
PRK10510 |
OmpA family lipoprotein; |
18-228 |
2.05e-73 |
|
OmpA family lipoprotein;
Pssm-ID: 182507 [Multi-domain] Cd Length: 219 Bit Score: 222.06 E-value: 2.05e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 18 VVVTSALIASGCSTvNPYTNEQQTAKATTGALIGAVAGAAVGVASSSKSDRGKGALIGAASGAAVGGGIGYYMDVQETKL 97
Cdd:PRK10510 10 AVVSGALAVSGCTT-NPYTGEREAGKSGIGAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 98 RQQLASTGVSVTRDGDNIILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDAYNLRLSQVR 177
Cdd:PRK10510 89 RDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQR 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2077292243 178 ASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLTPT 228
Cdd:PRK10510 169 ADSVASALITQGVDASRIRTQGMGPANPIASNSTAEGKAQNRRVEITLSPL 219
|
|
| OmpA_C-like |
cd07185 |
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ... |
123-225 |
1.49e-40 |
|
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Pssm-ID: 143586 [Multi-domain] Cd Length: 106 Bit Score: 134.60 E-value: 1.49e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 123 VTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDAYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGE 202
Cdd:cd07185 4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83
|
90 100
....*....|....*....|...
gi 2077292243 203 ASPIASNANAAGRAQNRRVEIVL 225
Cdd:cd07185 84 SRPIASNDTEEGRAKNRRVEIVI 106
|
|
| OmpA |
COG2885 |
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ... |
119-228 |
8.67e-38 |
|
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442131 [Multi-domain] Cd Length: 294 Bit Score: 133.37 E-value: 8.67e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 119 MPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDAYNLRLSQVRASEVGNYLMSKGVASARVKSK 198
Cdd:COG2885 185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAV 264
|
90 100 110
....*....|....*....|....*....|
gi 2077292243 199 GMGEASPIASNANAAGRAQNRRVEIVLTPT 228
Cdd:COG2885 265 GYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
|
|
| type_VI_ompA |
TIGR03350 |
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ... |
97-223 |
3.83e-24 |
|
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274533 [Multi-domain] Cd Length: 137 Bit Score: 93.14 E-value: 3.83e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 97 LRQQLASTGVSVTRDGDNIILNMPNEVTFGVDQTELSDGAKRVLNSVA-LVAKEysKTQLNVLGYTDS----SGSDAYNL 171
Cdd:TIGR03350 6 LAPEIAAGLLTVDEDGDRSVVRLRGDELFASGSAEVRAEFEPLLLRIAkALAAV--PGRITVVGHTDNvpirTARFPSNW 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2077292243 172 RLSQVRASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEI 223
Cdd:TIGR03350 84 HLSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEI 135
|
|
| OmpA |
pfam00691 |
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ... |
125-218 |
4.33e-19 |
|
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.
Pssm-ID: 425825 [Multi-domain] Cd Length: 95 Bit Score: 78.94 E-value: 4.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 125 FGVDQTELSDGAKRVLNSVALVAKEYS-KTQLNVLGYTDSSGSDAYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGEA 203
Cdd:pfam00691 1 FDPGSSQLTPKAKATLDEIADLLKFPElKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80
|
90
....*....|....*
gi 2077292243 204 SPIASNANAAGRAQN 218
Cdd:pfam00691 81 KPITDNKTPEGRARN 95
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10510 |
PRK10510 |
OmpA family lipoprotein; |
18-228 |
2.05e-73 |
|
OmpA family lipoprotein;
Pssm-ID: 182507 [Multi-domain] Cd Length: 219 Bit Score: 222.06 E-value: 2.05e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 18 VVVTSALIASGCSTvNPYTNEQQTAKATTGALIGAVAGAAVGVASSSKSDRGKGALIGAASGAAVGGGIGYYMDVQETKL 97
Cdd:PRK10510 10 AVVSGALAVSGCTT-NPYTGEREAGKSGIGAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 98 RQQLASTGVSVTRDGDNIILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDAYNLRLSQVR 177
Cdd:PRK10510 89 RDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQR 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2077292243 178 ASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLTPT 228
Cdd:PRK10510 169 ADSVASALITQGVDASRIRTQGMGPANPIASNSTAEGKAQNRRVEITLSPL 219
|
|
| OmpA_C-like |
cd07185 |
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ... |
123-225 |
1.49e-40 |
|
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Pssm-ID: 143586 [Multi-domain] Cd Length: 106 Bit Score: 134.60 E-value: 1.49e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 123 VTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDAYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGE 202
Cdd:cd07185 4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83
|
90 100
....*....|....*....|...
gi 2077292243 203 ASPIASNANAAGRAQNRRVEIVL 225
Cdd:cd07185 84 SRPIASNDTEEGRAKNRRVEIVI 106
|
|
| OmpA |
COG2885 |
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ... |
119-228 |
8.67e-38 |
|
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442131 [Multi-domain] Cd Length: 294 Bit Score: 133.37 E-value: 8.67e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 119 MPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDAYNLRLSQVRASEVGNYLMSKGVASARVKSK 198
Cdd:COG2885 185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAV 264
|
90 100 110
....*....|....*....|....*....|
gi 2077292243 199 GMGEASPIASNANAAGRAQNRRVEIVLTPT 228
Cdd:COG2885 265 GYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
|
|
| MotB |
COG1360 |
Flagellar motor protein MotB [Cell motility]; |
95-227 |
1.87e-28 |
|
Flagellar motor protein MotB [Cell motility];
Pssm-ID: 440971 [Multi-domain] Cd Length: 174 Bit Score: 105.70 E-value: 1.87e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 95 TKLRQQLASTGVSVTRDGDNIILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKtQLNVLGYTDS---SGSDAY-N 170
Cdd:COG1360 33 SALEENLLSGQVEVRITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVPN-RIRVEGHTDNvpiSTARFPsN 111
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2077292243 171 LRLSQVRASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLTP 227
Cdd:COG1360 112 WELSAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILR 168
|
|
| type_VI_ompA |
TIGR03350 |
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ... |
97-223 |
3.83e-24 |
|
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274533 [Multi-domain] Cd Length: 137 Bit Score: 93.14 E-value: 3.83e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 97 LRQQLASTGVSVTRDGDNIILNMPNEVTFGVDQTELSDGAKRVLNSVA-LVAKEysKTQLNVLGYTDS----SGSDAYNL 171
Cdd:TIGR03350 6 LAPEIAAGLLTVDEDGDRSVVRLRGDELFASGSAEVRAEFEPLLLRIAkALAAV--PGRITVVGHTDNvpirTARFPSNW 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2077292243 172 RLSQVRASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEI 223
Cdd:TIGR03350 84 HLSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEI 135
|
|
| PRK08126 |
PRK08126 |
hypothetical protein; Provisional |
97-227 |
1.59e-20 |
|
hypothetical protein; Provisional
Pssm-ID: 236157 [Multi-domain] Cd Length: 432 Bit Score: 88.98 E-value: 1.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 97 LRQQLASTGVSVTRDGDNiilnmpNEVTFGVDQTELSdGAKRVLNSV----ALVAKEYSKT--QLNVLGYTDS----SGS 166
Cdd:PRK08126 299 LKNEIARGTLSVDEDARH------SSVVFRGDAMFVP-GQATVNPAMgpliAKIAREIARVggKVTVTGHTDNqpirSAQ 371
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2077292243 167 DAYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLTP 227
Cdd:PRK08126 372 FASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEITVAE 432
|
|
| OmpA |
pfam00691 |
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ... |
125-218 |
4.33e-19 |
|
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.
Pssm-ID: 425825 [Multi-domain] Cd Length: 95 Bit Score: 78.94 E-value: 4.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 125 FGVDQTELSDGAKRVLNSVALVAKEYS-KTQLNVLGYTDSSGSDAYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGEA 203
Cdd:pfam00691 1 FDPGSSQLTPKAKATLDEIADLLKFPElKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80
|
90
....*....|....*
gi 2077292243 204 SPIASNANAAGRAQN 218
Cdd:pfam00691 81 KPITDNKTPEGRARN 95
|
|
| PRK09038 |
PRK09038 |
flagellar motor protein MotD; Reviewed |
106-226 |
4.61e-17 |
|
flagellar motor protein MotD; Reviewed
Pssm-ID: 181618 [Multi-domain] Cd Length: 281 Bit Score: 77.74 E-value: 4.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 106 VSVTRDGDNIILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTqLNVLGYTDSS--GSDAY--NLRLSQVRASEV 181
Cdd:PRK09038 118 VTVRRNELWIEIEINSSLLFGSGDAMLSDQAFAILEKVAEVLKPAPNP-IHVEGFTDNVpiATAQFpsNWELSAARAASV 196
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2077292243 182 GNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLT 226
Cdd:PRK09038 197 VRLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVIL 241
|
|
| PRK10808 |
PRK10808 |
outer membrane protein A; Reviewed |
157-223 |
6.94e-17 |
|
outer membrane protein A; Reviewed
Pssm-ID: 236764 [Multi-domain] Cd Length: 351 Bit Score: 78.19 E-value: 6.94e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2077292243 157 VLGYTDSSGSDAYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGEASPIASN--ANAAGR-------AQNRRVEI 223
Cdd:PRK10808 262 VLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNtcDNVKPRaalidclAPDRRVEI 337
|
|
| motB |
PRK08457 |
flagellar motor protein MotB; Reviewed |
90-223 |
5.95e-15 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 181435 [Multi-domain] Cd Length: 257 Bit Score: 71.67 E-value: 5.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 90 MDVQETKLRQQLASTGVSVTRDGDNIILNMPNEVTFGVDQTEL--SDGAKRVLNSVALVAKEYSKTQLNVLGYTDSS--- 164
Cdd:PRK08457 91 SQNTQQETIERRKGEGGALDQIDNGIALKLPSKLLFENGSAEIinADMMDYLKRIAKIITKLPKQVKINVRGYTDNSpln 170
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 165 GSD-AYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEI 223
Cdd:PRK08457 171 KSRyKDHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEI 230
|
|
| PRK07033 |
PRK07033 |
DotU family type VI secretion system protein; |
146-230 |
8.06e-15 |
|
DotU family type VI secretion system protein;
Pssm-ID: 180801 [Multi-domain] Cd Length: 427 Bit Score: 72.78 E-value: 8.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 146 VAKEYSKTQLNVL--GYTDS----SGSDAYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNR 219
Cdd:PRK07033 336 VADALNQVKGNVLvtGYSDNvpirTARFPSNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNR 415
|
90
....*....|.
gi 2077292243 220 RVEIVLTPTGQ 230
Cdd:PRK07033 416 RVEITLLVAPG 426
|
|
| PRK09967 |
PRK09967 |
OmpA family protein; |
117-227 |
5.28e-13 |
|
OmpA family protein;
Pssm-ID: 182172 [Multi-domain] Cd Length: 160 Bit Score: 64.62 E-value: 5.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 117 LNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDAYNLRLSQVRASEVGN-YLMSKGVASARV 195
Cdd:PRK09967 48 LGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADaWAMGGQIPRSNL 127
|
90 100 110
....*....|....*....|....*....|..
gi 2077292243 196 KSKGMGEASPIASNANAAGRAQNRRVEIVLTP 227
Cdd:PRK09967 128 TTQGLGKKYPIASNKTAQGRAENRRVAVVITT 159
|
|
| motB |
PRK08944 |
flagellar motor protein MotB; Reviewed |
96-225 |
5.51e-13 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 236356 [Multi-domain] Cd Length: 302 Bit Score: 66.57 E-value: 5.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 96 KLRQQLASTGVSVTRDGDNIILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTqLNVLGYTDSSG--SDAY--NL 171
Cdd:PRK08944 154 QLEKEIEDGAIEIESLGQQIIIRIREKGSFPSGSAFLQPKFKPVVRKIGELLKDVPGI-ITVSGHTDNVPisSELYrsNW 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2077292243 172 RLSQVRASEVGNYLMS-KGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVL 225
Cdd:PRK08944 233 DLSSARAVAVAHELLKvKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIII 287
|
|
| PRK06925 |
PRK06925 |
flagellar motor protein MotB; |
106-225 |
7.24e-13 |
|
flagellar motor protein MotB;
Pssm-ID: 235887 [Multi-domain] Cd Length: 230 Bit Score: 65.56 E-value: 7.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 106 VSVTRDGDNIILNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSkTQLNVLGYTDSSGSDAY----NLRLSQVRASEV 181
Cdd:PRK06925 103 ITAKRDERGVVLVLQEAVLFETGEADILKQAEPFLHKIGVLLSTIP-NDIKVEGHTDSRPISTYrypsNWELSAARASSV 181
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2077292243 182 GNYLMSK-GVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVL 225
Cdd:PRK06925 182 IRYFTSKeKLDSSRFIAVGYADTKPVVPNTTEENMQENRRVEIVI 226
|
|
| pdsO |
TIGR03789 |
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ... |
140-225 |
9.97e-13 |
|
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274783 [Multi-domain] Cd Length: 243 Bit Score: 65.21 E-value: 9.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 140 LNSVALVAKEYSKTQLNVLGYTDSSGSDAYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNR 219
Cdd:TIGR03789 158 LDEVATLMKQSPELKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARLTTQAFGESAPLKDEQESESDFFDR 237
|
....*.
gi 2077292243 220 RVEIVL 225
Cdd:TIGR03789 238 RVTLTL 243
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
122-226 |
1.69e-12 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 65.37 E-value: 1.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 122 EVTFGVDQTELSDGAKRVLNSVALVAKEYSKT-------QLNVLGYTDS---SGSDAY--NLRLSQVRASEVGNYLMSKG 189
Cdd:PRK09039 225 EVLFPTGSAELNPEGQAEIAKLAAALIELAKEippeinwVLRVDGHTDNvplSGTGRFrdNWELSSARAISVVKFLIALG 304
|
90 100 110
....*....|....*....|....*....|....*..
gi 2077292243 190 VASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLT 226
Cdd:PRK09039 305 VPADRLAAAGFGEFQPLDPGDTPEARARNRRIELKLT 341
|
|
| PRK09040 |
PRK09040 |
hypothetical protein; Provisional |
123-227 |
1.86e-12 |
|
hypothetical protein; Provisional
Pssm-ID: 181620 [Multi-domain] Cd Length: 214 Bit Score: 63.88 E-value: 1.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 123 VTFGVDQTELSDGAKRVLNSVALVAKEYSKTQ---LNVLGYTD------SSGSDAYNLRLSQVRASEVGNYLMSKGVASA 193
Cdd:PRK09040 90 VLFALNSDQLQPEGRELLKSLAGPLAAYLRARdeiLMVSGFTDdqpvraGNRRFADNWELSAQRALTVTRALIDAGVPAS 169
|
90 100 110
....*....|....*....|....*....|....
gi 2077292243 194 RVKSKGMGEASPIASNANAAGRAQNRRVEIVLTP 227
Cdd:PRK09040 170 SVFAAAFGSEQPVASNADDEGRAKNRRVEIAPVP 203
|
|
| motB |
PRK07734 |
flagellar motor protein MotB; Reviewed |
168-230 |
1.09e-08 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 236080 [Multi-domain] Cd Length: 259 Bit Score: 53.98 E-value: 1.09e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2077292243 168 AYNLRLSQVRASEVGNYLMSKGVASARVKS-KGMGEASPIASNANAAGRAQNRRVEIVLTPTGQ 230
Cdd:PRK07734 193 ASNWELSVMRAVNFMQVLLENKELDPEKFSaKGYGEYKPIASNDTAEGRAKNRRVEVLILPLTE 256
|
|
| PRK10802 |
PRK10802 |
peptidoglycan-associated lipoprotein Pal; |
121-224 |
9.11e-07 |
|
peptidoglycan-associated lipoprotein Pal;
Pssm-ID: 182744 [Multi-domain] Cd Length: 173 Bit Score: 47.56 E-value: 9.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077292243 121 NEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDAYNLRLSQVRASEVGNYLMSKGVASARVKSKGM 200
Cdd:PRK10802 69 NIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSY 148
|
90 100
....*....|....*....|....
gi 2077292243 201 GEASPIASNANAAGRAQNRRVEIV 224
Cdd:PRK10802 149 GKEKPAVLGHDEAAYAKNRRAVLV 172
|
|
| PRK07034 |
PRK07034 |
hypothetical protein; Provisional |
155-224 |
2.65e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 168775 [Multi-domain] Cd Length: 536 Bit Score: 47.48 E-value: 2.65e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2077292243 155 LNVLGYTDS----SGSDAYNLRLSQVRASEVGNYLMSKG----VASARVKSKGMGEASPIASNANAAGRAQNRRVEIV 224
Cdd:PRK07034 429 IEVIGHTDNkpfrSTSGNNNLKLSAARASVVADKLRESTqineTHQREISAIGRGESDPLADNATEEGRKRNRRVDIL 506
|
|
| motB |
PRK06667 |
flagellar motor protein MotB; Validated |
157-226 |
9.72e-05 |
|
flagellar motor protein MotB; Validated
Pssm-ID: 180652 [Multi-domain] Cd Length: 252 Bit Score: 42.47 E-value: 9.72e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2077292243 157 VLGYTDSSGSDA-----YNLRLSQVRASEVGNYLMSKGVAS-ARVKSKGMGEASPIASNANAAGRAQNRRVEIVLT 226
Cdd:PRK06667 164 IEGHTDNVDVNPegpwkSNWELSGARAVNMLEYILNYGDQSeSWFQVSGFAGSRPLATEDTPEGRAYNRRIDIVIL 239
|
|
| |
