NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2083256977|ref|WP_220813829|]
View 

MULTISPECIES: DUF805 domain-containing protein [Pseudomonas]

Protein Classification

DUF805 domain-containing protein( domain architecture ID 10006974)

DUF805 domain-containing protein similar to Escherichia coli inner membrane proteins YhaH and YhaI, as well as uncharacterized protein YiiR

Gene Ontology:  GO:0016020

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
yhaH COG3152
Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];
161-265 3.34e-27

Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];


:

Pssm-ID: 442386  Cd Length: 118  Bit Score: 103.02  E-value: 3.34e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083256977 161 KVFSVSGRIGRVRYLGWSMALLLISLVAYGIAAGIMAASPIFGGILMIPVVIGAVVVSVQIGVQRLHDIGWSGWLWLLNL 240
Cdd:COG3152     9 KYFSFSGRASRSEYWWFVLFNLLVSLVLAILDALLGSSGAILLGLLAALYALALLIPSLALTVRRLHDTGRSGWWLLLLL 88

                          90       100
                  ....*....|....*....|....*
gi 2083256977 241 IPVVGSVFALLMLIVPGNQGANRYG 265
Cdd:COG3152    89 IPFIGIIVLLVLLFLPGTPGPNRYG 113
PilA super family cl44174
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
282-305 1.48e-06

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


The actual alignment was detected with superfamily member COG4969:

Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 47.01  E-value: 1.48e-06
                          10        20
                  ....*....|....*....|....
gi 2083256977 282 MLLVPILGIVAAIALPAYQDYVNR 305
Cdd:COG4969    14 MIVVAIIGILAAIAIPAYQDYVAR 37
 
Name Accession Description Interval E-value
yhaH COG3152
Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];
161-265 3.34e-27

Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];


Pssm-ID: 442386  Cd Length: 118  Bit Score: 103.02  E-value: 3.34e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083256977 161 KVFSVSGRIGRVRYLGWSMALLLISLVAYGIAAGIMAASPIFGGILMIPVVIGAVVVSVQIGVQRLHDIGWSGWLWLLNL 240
Cdd:COG3152     9 KYFSFSGRASRSEYWWFVLFNLLVSLVLAILDALLGSSGAILLGLLAALYALALLIPSLALTVRRLHDTGRSGWWLLLLL 88

                          90       100
                  ....*....|....*....|....*
gi 2083256977 241 IPVVGSVFALLMLIVPGNQGANRYG 265
Cdd:COG3152    89 IPFIGIIVLLVLLFLPGTPGPNRYG 113
DUF805 pfam05656
Protein of unknown function (DUF805); This family consists of several bacterial proteins of ...
 163-265 1.12e-23

Protein of unknown function (DUF805); This family consists of several bacterial proteins of unknown function.


Pssm-ID: 461706  Cd Length: 110  Bit Score: 93.52  E-value: 1.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083256977 163 FSVSGRIGRVRYLGWSMALLLISLVAYGIAAGIMAASPIFGGILMIPVVIGAVVVSVQ---IGVQRLHDIGWSGWLWLLN 239
Cdd:pfam05656   2 FDFSGRASRKEYWWFALFNFLVLFALLLLLGLLGALGLLGGALGVLISLLLLIPSLIFllaLTVRRLHDIGRSGWWLLLG 81

                          90       100
                  ....*....|....*....|....*.
gi 2083256977 240 LIPVVGSVFALLMLIVPGNQGANRYG 265
Cdd:pfam05656  82 LIPLIGLIVLLVLLFLPGTPGPNRYG 107
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
282-305 1.48e-06

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 47.01  E-value: 1.48e-06
                          10        20
                  ....*....|....*....|....
gi 2083256977 282 MLLVPILGIVAAIALPAYQDYVNR 305
Cdd:COG4969    14 MIVVAIIGILAAIAIPAYQDYVAR 37
 
Name Accession Description Interval E-value
yhaH COG3152
Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];
161-265 3.34e-27

Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];


Pssm-ID: 442386  Cd Length: 118  Bit Score: 103.02  E-value: 3.34e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083256977 161 KVFSVSGRIGRVRYLGWSMALLLISLVAYGIAAGIMAASPIFGGILMIPVVIGAVVVSVQIGVQRLHDIGWSGWLWLLNL 240
Cdd:COG3152     9 KYFSFSGRASRSEYWWFVLFNLLVSLVLAILDALLGSSGAILLGLLAALYALALLIPSLALTVRRLHDTGRSGWWLLLLL 88

                          90       100
                  ....*....|....*....|....*
gi 2083256977 241 IPVVGSVFALLMLIVPGNQGANRYG 265
Cdd:COG3152    89 IPFIGIIVLLVLLFLPGTPGPNRYG 113
DUF805 pfam05656
Protein of unknown function (DUF805); This family consists of several bacterial proteins of ...
 163-265 1.12e-23

Protein of unknown function (DUF805); This family consists of several bacterial proteins of unknown function.


Pssm-ID: 461706  Cd Length: 110  Bit Score: 93.52  E-value: 1.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2083256977 163 FSVSGRIGRVRYLGWSMALLLISLVAYGIAAGIMAASPIFGGILMIPVVIGAVVVSVQ---IGVQRLHDIGWSGWLWLLN 239
Cdd:pfam05656   2 FDFSGRASRKEYWWFALFNFLVLFALLLLLGLLGALGLLGGALGVLISLLLLIPSLIFllaLTVRRLHDIGRSGWWLLLG 81

                          90       100
                  ....*....|....*....|....*.
gi 2083256977 240 LIPVVGSVFALLMLIVPGNQGANRYG 265
Cdd:pfam05656  82 LIPLIGLIVLLVLLFLPGTPGPNRYG 107
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
282-305 1.48e-06

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 47.01  E-value: 1.48e-06
                          10        20
                  ....*....|....*....|....
gi 2083256977 282 MLLVPILGIVAAIALPAYQDYVNR 305
Cdd:COG4969    14 MIVVAIIGILAAIAIPAYQDYVAR 37
PilE COG4968
Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];
282-305 3.38e-04

Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];


Pssm-ID: 443994 [Multi-domain]  Cd Length: 124  Bit Score: 39.67  E-value: 3.38e-04
                          10        20
                  ....*....|....*....|....
gi 2083256977 282 MLLVPILGIVAAIALPAYQDYVNR 305
Cdd:COG4968    18 MIVVAIIGILAAIAIPSYQDYVER 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH