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Conserved domains on  [gi|2084182326|ref|WP_221281789|]
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right-handed parallel beta-helix repeat-containing protein [Xanthomonas campestris]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4990 super family cl24824
Domain of unknown function; This family around 150 residues locates in the C-terminal of some ...
 364-416 4.08e-06

Domain of unknown function; This family around 150 residues locates in the C-terminal of some uncharacterized proteins in various Bacteroides species. The function of this family remains unknown.


The actual alignment was detected with superfamily member pfam16380:

Pssm-ID: 406716  Cd Length: 142  Bit Score: 46.25  E-value: 4.08e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2084182326 364 SENDIGRNSFNLPLVVSAGDFISLDERQLMRPRQANGDLPIMTFATLAPGSAL 416
Cdd:pfam16380   3 AKSEVSNNSFDGSEEVIETDFISLEEAELMRDRKPNGDLPDVNFGKLTTDAEL 55
NosD super family cl34609
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 58-230 1.20e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


The actual alignment was detected with superfamily member COG3420:

Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 47.22  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084182326  58 GDTVYLRGGTYRltsANIsvvrqpyavvnEITKPgIAYvnVANERPVFDfsavtpTGLRVAAFRVASNNCVFRGFEVVGV 137
Cdd:COG3420    34 GDTIEVPPGTYE---GNI-----------VIDKP-LTL--IGEGGAVID------GGGKGTVITITADNVTVRGLTITGS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084182326 138 RitiADRLTQSEAFRVDRGNGNLFENLAIHDGqAIGWYLVSGSDNRVHNVDAYNNRglnafSDGNIDGFGVHptLAGSSG 217
Cdd:COG3420    91 G---DSLTDDDAGIYVRGADNAVIENNRIENN-LFGIYLEGSDNNVIRNNTISGNR-----DLRADRGNGIH--LWNSPG 159

                         170
                  ....*....|...
gi 2084182326 218 NLIEGSRAWFNSD 230
Cdd:COG3420   160 NVIEGNTISGGRD 172
choice_anch_Q super family cl49486
choice-of-anchor Q domain;
395-439 3.40e-03

choice-of-anchor Q domain;


The actual alignment was detected with superfamily member NF041518:

Pssm-ID: 469403 [Multi-domain]  Cd Length: 58  Bit Score: 35.54  E-value: 3.40e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2084182326 395 PRQANGDlPIMTFAtLAPGSALIDAGADTGEAF---------NGRAPDLGAFEA 439
Cdd:NF041518    6 PLADNGG-PTQTHA-LLPGSPAIDAGDNAGCPAtdqrgvarpQGTACDIGAYEF 57
 
Name Accession Description Interval E-value
DUF4990 pfam16380
Domain of unknown function; This family around 150 residues locates in the C-terminal of some ...
 364-416 4.08e-06

Domain of unknown function; This family around 150 residues locates in the C-terminal of some uncharacterized proteins in various Bacteroides species. The function of this family remains unknown.


Pssm-ID: 406716  Cd Length: 142  Bit Score: 46.25  E-value: 4.08e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2084182326 364 SENDIGRNSFNLPLVVSAGDFISLDERQLMRPRQANGDLPIMTFATLAPGSAL 416
Cdd:pfam16380   3 AKSEVSNNSFDGSEEVIETDFISLEEAELMRDRKPNGDLPDVNFGKLTTDAEL 55
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 58-230 1.20e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 47.22  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084182326  58 GDTVYLRGGTYRltsANIsvvrqpyavvnEITKPgIAYvnVANERPVFDfsavtpTGLRVAAFRVASNNCVFRGFEVVGV 137
Cdd:COG3420    34 GDTIEVPPGTYE---GNI-----------VIDKP-LTL--IGEGGAVID------GGGKGTVITITADNVTVRGLTITGS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084182326 138 RitiADRLTQSEAFRVDRGNGNLFENLAIHDGqAIGWYLVSGSDNRVHNVDAYNNRglnafSDGNIDGFGVHptLAGSSG 217
Cdd:COG3420    91 G---DSLTDDDAGIYVRGADNAVIENNRIENN-LFGIYLEGSDNNVIRNNTISGNR-----DLRADRGNGIH--LWNSPG 159

                         170
                  ....*....|...
gi 2084182326 218 NLIEGSRAWFNSD 230
Cdd:COG3420   160 NVIEGNTISGGRD 172
choice_anch_Q NF041518
choice-of-anchor Q domain;
395-439 3.40e-03

choice-of-anchor Q domain;


Pssm-ID: 469403 [Multi-domain]  Cd Length: 58  Bit Score: 35.54  E-value: 3.40e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2084182326 395 PRQANGDlPIMTFAtLAPGSALIDAGADTGEAF---------NGRAPDLGAFEA 439
Cdd:NF041518    6 PLADNGG-PTQTHA-LLPGSPAIDAGDNAGCPAtdqrgvarpQGTACDIGAYEF 57
 
Name Accession Description Interval E-value
DUF4990 pfam16380
Domain of unknown function; This family around 150 residues locates in the C-terminal of some ...
 364-416 4.08e-06

Domain of unknown function; This family around 150 residues locates in the C-terminal of some uncharacterized proteins in various Bacteroides species. The function of this family remains unknown.


Pssm-ID: 406716  Cd Length: 142  Bit Score: 46.25  E-value: 4.08e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2084182326 364 SENDIGRNSFNLPLVVSAGDFISLDERQLMRPRQANGDLPIMTFATLAPGSAL 416
Cdd:pfam16380   3 AKSEVSNNSFDGSEEVIETDFISLEEAELMRDRKPNGDLPDVNFGKLTTDAEL 55
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 58-230 1.20e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 47.22  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084182326  58 GDTVYLRGGTYRltsANIsvvrqpyavvnEITKPgIAYvnVANERPVFDfsavtpTGLRVAAFRVASNNCVFRGFEVVGV 137
Cdd:COG3420    34 GDTIEVPPGTYE---GNI-----------VIDKP-LTL--IGEGGAVID------GGGKGTVITITADNVTVRGLTITGS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2084182326 138 RitiADRLTQSEAFRVDRGNGNLFENLAIHDGqAIGWYLVSGSDNRVHNVDAYNNRglnafSDGNIDGFGVHptLAGSSG 217
Cdd:COG3420    91 G---DSLTDDDAGIYVRGADNAVIENNRIENN-LFGIYLEGSDNNVIRNNTISGNR-----DLRADRGNGIH--LWNSPG 159

                         170
                  ....*....|...
gi 2084182326 218 NLIEGSRAWFNSD 230
Cdd:COG3420   160 NVIEGNTISGGRD 172
choice_anch_Q NF041518
choice-of-anchor Q domain;
395-439 3.40e-03

choice-of-anchor Q domain;


Pssm-ID: 469403 [Multi-domain]  Cd Length: 58  Bit Score: 35.54  E-value: 3.40e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2084182326 395 PRQANGDlPIMTFAtLAPGSALIDAGADTGEAF---------NGRAPDLGAFEA 439
Cdd:NF041518    6 PLADNGG-PTQTHA-LLPGSPAIDAGDNAGCPAtdqrgvarpQGTACDIGAYEF 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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