NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2102177690|ref|WP_223861868|]
View 

MULTISPECIES: polymorphic toxin type 44 domain-containing protein [Enterobacter]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ntox44 super family cl21408
Bacterial toxin 44; A predicted RNase toxin found in bacterial polymorphic toxin systems. The ...
 9-94 2.56e-17

Bacterial toxin 44; A predicted RNase toxin found in bacterial polymorphic toxin systems. The toxin possesses an all-alpha-helical fold with conserved DxK, GNxxxG, and DxxxD motifs. In bacterial polymorphic toxin systems, the toxin is exported by the type 2, type 6 or type 7 secretion systems.


The actual alignment was detected with superfamily member pfam15607:

Pssm-ID: 464773  Cd Length: 94  Bit Score: 70.07  E-value: 2.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2102177690   9 WFYERVRNGGTWDYKQQKRA---------------YADFGNFHYGAVGYAACIPEKILLIAAGAAQWKAGTSRpewgnft 73
Cdd:pfam15607   1 WWYEMVKTGGPWDHKPKIEDwlntighkynghdyfYDDWGNIHYGYVGRAAGFSESTLLRGSGLEQAITNISN------- 73

                          90       100
                  ....*....|....*....|.
gi 2102177690  74 gapPFGDDPMDQFWIKQGIDY 94
Cdd:pfam15607  74 ---SFGDDPDDKITIKIGIDL 91
 
Name Accession Description Interval E-value
Ntox44 pfam15607
Bacterial toxin 44; A predicted RNase toxin found in bacterial polymorphic toxin systems. The ...
 9-94 2.56e-17

Bacterial toxin 44; A predicted RNase toxin found in bacterial polymorphic toxin systems. The toxin possesses an all-alpha-helical fold with conserved DxK, GNxxxG, and DxxxD motifs. In bacterial polymorphic toxin systems, the toxin is exported by the type 2, type 6 or type 7 secretion systems.


Pssm-ID: 464773  Cd Length: 94  Bit Score: 70.07  E-value: 2.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2102177690   9 WFYERVRNGGTWDYKQQKRA---------------YADFGNFHYGAVGYAACIPEKILLIAAGAAQWKAGTSRpewgnft 73
Cdd:pfam15607   1 WWYEMVKTGGPWDHKPKIEDwlntighkynghdyfYDDWGNIHYGYVGRAAGFSESTLLRGSGLEQAITNISN------- 73

                          90       100
                  ....*....|....*....|.
gi 2102177690  74 gapPFGDDPMDQFWIKQGIDY 94
Cdd:pfam15607  74 ---SFGDDPDDKITIKIGIDL 91
 
Name Accession Description Interval E-value
Ntox44 pfam15607
Bacterial toxin 44; A predicted RNase toxin found in bacterial polymorphic toxin systems. The ...
 9-94 2.56e-17

Bacterial toxin 44; A predicted RNase toxin found in bacterial polymorphic toxin systems. The toxin possesses an all-alpha-helical fold with conserved DxK, GNxxxG, and DxxxD motifs. In bacterial polymorphic toxin systems, the toxin is exported by the type 2, type 6 or type 7 secretion systems.


Pssm-ID: 464773  Cd Length: 94  Bit Score: 70.07  E-value: 2.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2102177690   9 WFYERVRNGGTWDYKQQKRA---------------YADFGNFHYGAVGYAACIPEKILLIAAGAAQWKAGTSRpewgnft 73
Cdd:pfam15607   1 WWYEMVKTGGPWDHKPKIEDwlntighkynghdyfYDDWGNIHYGYVGRAAGFSESTLLRGSGLEQAITNISN------- 73

                          90       100
                  ....*....|....*....|.
gi 2102177690  74 gapPFGDDPMDQFWIKQGIDY 94
Cdd:pfam15607  74 ---SFGDDPDDKITIKIGIDL 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH