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Conserved domains on  [gi|2104810292|ref|WP_224799193|]
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MULTISPECIES: ATP-binding protein [Enterococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IS21_help_AAA super family cl41901
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 5-39 1.23e-12

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


The actual alignment was detected with superfamily member NF038214:

Pssm-ID: 439516  Cd Length: 232  Bit Score: 58.25  E-value: 1.23e-12
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2104810292   5 ANFFFQLINLRYEKKSTVLTSNIALFQWTEVFQDK 39
Cdd:NF038214  170 ANLLFELIADRYERGSTIITSNLPFSEWGEVFGDP 204
 
Name Accession Description Interval E-value
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 5-39 1.23e-12

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 58.25  E-value: 1.23e-12
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2104810292   5 ANFFFQLINLRYEKKSTVLTSNIALFQWTEVFQDK 39
Cdd:NF038214  170 ANLLFELIADRYERGSTIITSNLPFSEWGEVFGDP 204
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
5-38 5.20e-11

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 54.02  E-value: 5.20e-11
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2104810292   5 ANFFFQLINLRYEKKSTVLTSNIALFQWTEVFQD 38
Cdd:COG1484   179 AELLFELISDRYERRSTIITSNLPFSEWGEVFGD 212
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
 2-38 1.57e-09

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 49.75  E-value: 1.57e-09
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2104810292   2 KNRANFFFQLINLRYEKKSTVLTSNIALFQWTEVFQD 38
Cdd:pfam01695 169 QAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGD 205
PRK06526 PRK06526
transposase; Provisional
 5-38 1.02e-08

transposase; Provisional


Pssm-ID: 180607  Cd Length: 254  Bit Score: 47.56  E-value: 1.02e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2104810292   5 ANFFFQLINLRYEKKSTVLTSNIALFQWTEVFQD 38
Cdd:PRK06526  178 ANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGD 211
 
Name Accession Description Interval E-value
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 5-39 1.23e-12

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 58.25  E-value: 1.23e-12
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2104810292   5 ANFFFQLINLRYEKKSTVLTSNIALFQWTEVFQDK 39
Cdd:NF038214  170 ANLLFELIADRYERGSTIITSNLPFSEWGEVFGDP 204
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
5-38 5.20e-11

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 54.02  E-value: 5.20e-11
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2104810292   5 ANFFFQLINLRYEKKSTVLTSNIALFQWTEVFQD 38
Cdd:COG1484   179 AELLFELISDRYERRSTIITSNLPFSEWGEVFGD 212
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
 2-38 1.57e-09

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 49.75  E-value: 1.57e-09
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2104810292   2 KNRANFFFQLINLRYEKKSTVLTSNIALFQWTEVFQD 38
Cdd:pfam01695 169 QAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGD 205
PRK06526 PRK06526
transposase; Provisional
 5-38 1.02e-08

transposase; Provisional


Pssm-ID: 180607  Cd Length: 254  Bit Score: 47.56  E-value: 1.02e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2104810292   5 ANFFFQLINLRYEKKSTVLTSNIALFQWTEVFQD 38
Cdd:PRK06526  178 ANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGD 211
PRK09183 PRK09183
transposase/IS protein; Provisional
 2-38 1.68e-08

transposase/IS protein; Provisional


Pssm-ID: 181681  Cd Length: 259  Bit Score: 47.01  E-value: 1.68e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2104810292   2 KNRANFFFQLINLRYEKKSTVLTSNIALFQWTEVFQD 38
Cdd:PRK09183  180 QEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAG 216
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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