|
Name |
Accession |
Description |
Interval |
E-value |
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
223-306 |
1.77e-24 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 94.54 E-value: 1.77e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 223 KITLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDEEYSITDAAFSAGFTDAGYYSRVFRKCTGVSP 302
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
....
gi 2105562895 303 RKFR 306
Cdd:smart00342 81 SEYR 84
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
56-307 |
5.34e-23 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 95.62 E-value: 5.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 56 WHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHSGHMVEGKDCHYWSITFDPKIVYGFEKSLIQTKYVDLVVN 135
Cdd:COG2207 9 LLLLLLALLLLLLLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLAL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 136 GHEFSALWFDGSEEWHGDIREKMKKVIELDLERPDFYEMEVQMLLSEIWLVLLRHQGAFNQDAESLNPKELARLKTILGF 215
Cdd:COG2207 89 LLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 216 IhenydkkiTLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDEEYSITDAAFSAGFTDAGYYSRVFR 295
Cdd:COG2207 169 L--------TLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFK 240
|
250
....*....|..
gi 2105562895 296 KCTGVSPRKFRK 307
Cdd:COG2207 241 KRFGVTPSEYRK 252
|
|
| PRK10371 |
PRK10371 |
transcriptional regulator MelR; |
53-307 |
6.85e-16 |
|
transcriptional regulator MelR;
Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 76.78 E-value: 6.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 53 SWHWHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHsgHMVEGKDCH-----------YWSITFDP----KIV 117
Cdd:PRK10371 40 TSHWHGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACTPH--QLTDPGNCRsmaifnlpmhlFLSWPLDKdlinHVT 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 118 YGfekSLIQTKYVDLVvNGHEFsalwfdgsEEWHGDirekmkkvieLDLERPDFYEM---EVQMLLSEI----WLVLLrH 190
Cdd:PRK10371 118 HG---MVIKSLATQQL-SPFEV--------RRWQQE----------LNSPNEQIRQLaidEIGLMLKRFslsgWEPIL-V 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 191 QGAFNQDAESLNPKELARLKTILGFIHENYDKKITLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRD 270
Cdd:PRK10371 175 NKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSD 254
|
250 260 270
....*....|....*....|....*....|....*..
gi 2105562895 271 EEYSITDAAFSAGFTDAGYYSRVFRKCTGVSPRKFRK 307
Cdd:PRK10371 255 TDKSILDIALTAGFRSSSRFYSTFGKYVGMSPQQYRK 291
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
229-307 |
1.33e-15 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 70.70 E-value: 1.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 229 IADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDE-EYSITDAAFSAGFTDAGYYSRVFRKCTGVSPRKFRK 307
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEDtGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
|
| PRK10572 |
PRK10572 |
arabinose operon transcriptional regulator AraC; |
146-307 |
3.44e-15 |
|
arabinose operon transcriptional regulator AraC;
Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 74.62 E-value: 3.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 146 GSEEWHGDIREKMKKVIELdLERPDFYEMEVQMLLSEiwLVLLRhqgAFNQDAESLNPKELARLKTILGFIHENYDKKIT 225
Cdd:PRK10572 128 PDEALQPEFSDLFGQIEQA-GQSEGRYSELLAMNLLE--RLLLR---CMEAIPESLHPPMDPRVREACQYISDHLASEFD 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 226 LTDIADSVHICKSECCRFFKKHMNESLfdylLRYRVEQSIP----YLRDEEYSITDAAFSAGFTDAGYYSRVFRKCTGVS 301
Cdd:PRK10572 202 IESVAQHVCLSPSRLAHLFRQQLGISV----LRWREDQRISraklLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTGAS 277
|
....*.
gi 2105562895 302 PRKFRK 307
Cdd:PRK10572 278 PSEFRA 283
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
207-307 |
5.28e-15 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 74.42 E-value: 5.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 207 ARLKTILGFIHENYDKKITLTDIADSVHIckSEccR-F---FKKHMNESLFDYLLRYRVEQSIPYLRDEEYSITDAAFSA 282
Cdd:COG4977 210 PRLARAQAWMEANLEEPLSVDELARRAGM--SP--RtLerrFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAAC 285
|
90 100
....*....|....*....|....*
gi 2105562895 283 GFTDAGYYSRVFRKCTGVSPRKFRK 307
Cdd:COG4977 286 GFGSASHFRRAFRRRFGVSPSAYRR 310
|
|
| AraC_binding |
pfam02311 |
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization ... |
52-142 |
9.00e-09 |
|
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.
Pssm-ID: 396749 [Multi-domain] Cd Length: 134 Bit Score: 53.21 E-value: 9.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 52 FSWHWHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHSGHMVEGKDCHYWSITFDPKIVYGFEKSLIQTKYVD 131
Cdd:pfam02311 16 FPPHVHDFYVIGYIERGVGRFRLNGRTYHLGPGDLFLLPPGEPHDYEPESEDGWRYRWLYFEPELLERILADISILAGGP 95
|
90
....*....|..
gi 2105562895 132 -LVVNGHEFSAL 142
Cdd:pfam02311 96 lPLLRDPELAAL 107
|
|
| cupin_MelR-like_N |
cd06997 |
AraC/XylS family transcriptional regulators similar to Escherichia coli MelR, N-terminal cupin ... |
53-105 |
3.55e-04 |
|
AraC/XylS family transcriptional regulators similar to Escherichia coli MelR, N-terminal cupin domain; This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators, including Escherichia coli MelR, a transcription factor that controls melibiose utilization. MelR is encoded by the melR gene and is essential for melibiose-dependent triggering of the melAB operon that encodes products needed for melibiose catabolism and transport. Expression of melR is autoregulated by MelR, which represses the melR promoter by binding to a target that overlaps the transcript start. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Pssm-ID: 380401 Cd Length: 78 Bit Score: 38.51 E-value: 3.55e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2105562895 53 SWHWHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHsgHMVEGKDC 105
Cdd:cd06997 13 TPHWHGQVEVNIPFDGDVEYLINEHAVSLNAGHIGLFWGGLPH--QLTDTGDC 63
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
223-306 |
1.77e-24 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 94.54 E-value: 1.77e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 223 KITLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDEEYSITDAAFSAGFTDAGYYSRVFRKCTGVSP 302
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
....
gi 2105562895 303 RKFR 306
Cdd:smart00342 81 SEYR 84
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
56-307 |
5.34e-23 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 95.62 E-value: 5.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 56 WHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHSGHMVEGKDCHYWSITFDPKIVYGFEKSLIQTKYVDLVVN 135
Cdd:COG2207 9 LLLLLLALLLLLLLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLAL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 136 GHEFSALWFDGSEEWHGDIREKMKKVIELDLERPDFYEMEVQMLLSEIWLVLLRHQGAFNQDAESLNPKELARLKTILGF 215
Cdd:COG2207 89 LLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 216 IhenydkkiTLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDEEYSITDAAFSAGFTDAGYYSRVFR 295
Cdd:COG2207 169 L--------TLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFK 240
|
250
....*....|..
gi 2105562895 296 KCTGVSPRKFRK 307
Cdd:COG2207 241 KRFGVTPSEYRK 252
|
|
| PRK10371 |
PRK10371 |
transcriptional regulator MelR; |
53-307 |
6.85e-16 |
|
transcriptional regulator MelR;
Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 76.78 E-value: 6.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 53 SWHWHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHsgHMVEGKDCH-----------YWSITFDP----KIV 117
Cdd:PRK10371 40 TSHWHGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACTPH--QLTDPGNCRsmaifnlpmhlFLSWPLDKdlinHVT 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 118 YGfekSLIQTKYVDLVvNGHEFsalwfdgsEEWHGDirekmkkvieLDLERPDFYEM---EVQMLLSEI----WLVLLrH 190
Cdd:PRK10371 118 HG---MVIKSLATQQL-SPFEV--------RRWQQE----------LNSPNEQIRQLaidEIGLMLKRFslsgWEPIL-V 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 191 QGAFNQDAESLNPKELARLKTILGFIHENYDKKITLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRD 270
Cdd:PRK10371 175 NKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSD 254
|
250 260 270
....*....|....*....|....*....|....*..
gi 2105562895 271 EEYSITDAAFSAGFTDAGYYSRVFRKCTGVSPRKFRK 307
Cdd:PRK10371 255 TDKSILDIALTAGFRSSSRFYSTFGKYVGMSPQQYRK 291
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
229-307 |
1.33e-15 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 70.70 E-value: 1.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 229 IADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDE-EYSITDAAFSAGFTDAGYYSRVFRKCTGVSPRKFRK 307
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEDtGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
|
| PRK10572 |
PRK10572 |
arabinose operon transcriptional regulator AraC; |
146-307 |
3.44e-15 |
|
arabinose operon transcriptional regulator AraC;
Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 74.62 E-value: 3.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 146 GSEEWHGDIREKMKKVIELdLERPDFYEMEVQMLLSEiwLVLLRhqgAFNQDAESLNPKELARLKTILGFIHENYDKKIT 225
Cdd:PRK10572 128 PDEALQPEFSDLFGQIEQA-GQSEGRYSELLAMNLLE--RLLLR---CMEAIPESLHPPMDPRVREACQYISDHLASEFD 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 226 LTDIADSVHICKSECCRFFKKHMNESLfdylLRYRVEQSIP----YLRDEEYSITDAAFSAGFTDAGYYSRVFRKCTGVS 301
Cdd:PRK10572 202 IESVAQHVCLSPSRLAHLFRQQLGISV----LRWREDQRISraklLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTGAS 277
|
....*.
gi 2105562895 302 PRKFRK 307
Cdd:PRK10572 278 PSEFRA 283
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
207-307 |
5.28e-15 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 74.42 E-value: 5.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 207 ARLKTILGFIHENYDKKITLTDIADSVHIckSEccR-F---FKKHMNESLFDYLLRYRVEQSIPYLRDEEYSITDAAFSA 282
Cdd:COG4977 210 PRLARAQAWMEANLEEPLSVDELARRAGM--SP--RtLerrFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAAC 285
|
90 100
....*....|....*....|....*
gi 2105562895 283 GFTDAGYYSRVFRKCTGVSPRKFRK 307
Cdd:COG4977 286 GFGSASHFRRAFRRRFGVSPSAYRR 310
|
|
| PRK13503 |
PRK13503 |
HTH-type transcriptional activator RhaS; |
50-306 |
4.32e-11 |
|
HTH-type transcriptional activator RhaS;
Pssm-ID: 184094 [Multi-domain] Cd Length: 278 Bit Score: 62.39 E-value: 4.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 50 GTFSWHWHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHSGHMVEgkDCHYWSITF-DP---KIVYGFEKSLI 125
Cdd:PRK13503 26 AAFPEHHHDFHEIVIVEHGTGIHVFNGQPYTLSGGTVCFVRDHDRHLYEHTD--NLCLTNVLYrSPdafRFLAGLNQLLP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 126 QTKyvdlvvNGHEFSalwfdgseEW--HGDIREKMKKVIELDLERPDFYEMEVQ----MLLSEIwLVLLRhQGAFNQDAE 199
Cdd:PRK13503 104 QEQ------DGQYPS--------HWrvNQSVLQQVRQLVAQMEQQEESNDLEAIasreILFMQL-LVLLR-KSSLQENGE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 200 SLNpkelARLKTILGFIHENYDKKITLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDEEYSITDAA 279
Cdd:PRK13503 168 NSD----ARLNQLLAWLEDHFAEEVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDASVTDIA 243
|
250 260
....*....|....*....|....*..
gi 2105562895 280 FSAGFTDAGYYSRVFRKCTGVSPRKFR 306
Cdd:PRK13503 244 YRCGFGDSNHFSTLFRREFSWSPRDIR 270
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
197-307 |
2.25e-10 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 60.84 E-value: 2.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 197 DAESLNPKELARLKTILGFIHENYDKKITLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDEEySIT 276
Cdd:COG2169 74 DLAPGSPPRADLVARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQTGL-SVT 152
|
90 100 110
....*....|....*....|....*....|.
gi 2105562895 277 DAAFSAGFTDAGYYSRVFRKCTGVSPRKFRK 307
Cdd:COG2169 153 DAAYAAGFGSLSRFYEAFKKLLGMTPSAYRR 183
|
|
| QdoI |
COG1917 |
Cupin domain protein related to quercetin dioxygenase [General function prediction only]; |
23-110 |
6.40e-10 |
|
Cupin domain protein related to quercetin dioxygenase [General function prediction only];
Pssm-ID: 441521 [Multi-domain] Cd Length: 99 Bit Score: 55.63 E-value: 6.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 23 NQREIKAHGDFTFPVLVSKECITDYEF-----GTFSWHWHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHSG 97
Cdd:COG1917 2 RLAEIALTGVSVRVLADGEDELEVVRVtfepgARTPWHSHPGEELIYVLEGEGEVEVGGEEYELKPGDVVFIPPGVPHAF 81
|
90
....*....|...
gi 2105562895 98 HMVEGKDCHYWSI 110
Cdd:COG1917 82 RNLGDEPAVLLVV 94
|
|
| PRK09685 |
PRK09685 |
DNA-binding transcriptional activator FeaR; Provisional |
229-307 |
4.11e-09 |
|
DNA-binding transcriptional activator FeaR; Provisional
Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 56.58 E-value: 4.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 229 IADSVHICKSECCRFFKKHmNESLFDYLLRYRVEQSI----PYLRDEeySITDAAFSAGFTDAGYYSRVFRKCTGVSPRK 304
Cdd:PRK09685 220 IAGELGISVRSLYRLFAEQ-GLVVAQYIRNRRLDRCAddlrPAADDE--KITSIAYKWGFSDSSHFSTAFKQRFGVSPGE 296
|
...
gi 2105562895 305 FRK 307
Cdd:PRK09685 297 YRR 299
|
|
| AraC_binding |
pfam02311 |
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization ... |
52-142 |
9.00e-09 |
|
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.
Pssm-ID: 396749 [Multi-domain] Cd Length: 134 Bit Score: 53.21 E-value: 9.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 52 FSWHWHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHSGHMVEGKDCHYWSITFDPKIVYGFEKSLIQTKYVD 131
Cdd:pfam02311 16 FPPHVHDFYVIGYIERGVGRFRLNGRTYHLGPGDLFLLPPGEPHDYEPESEDGWRYRWLYFEPELLERILADISILAGGP 95
|
90
....*....|..
gi 2105562895 132 -LVVNGHEFSAL 142
Cdd:pfam02311 96 lPLLRDPELAAL 107
|
|
| PRK15186 |
PRK15186 |
AraC family transcriptional regulator; Provisional |
210-305 |
5.99e-08 |
|
AraC family transcriptional regulator; Provisional
Pssm-ID: 185108 [Multi-domain] Cd Length: 291 Bit Score: 53.15 E-value: 5.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 210 KTILGFIHENYDKKITLTDIADSVHICKSECCRFFKKHmNESLFDYLLRYRVEQSIPYLRDEEYSITDAAFSAGFTDAGY 289
Cdd:PRK15186 184 ENIYNIIISDISRKWALKDISDSLYMSCSTLKRKLKQE-NTSFSEVYLNARMNKATKLLRNSEYNITRVAYMCGYDSASY 262
|
90
....*....|....*.
gi 2105562895 290 YSRVFRKCTGVSPRKF 305
Cdd:PRK15186 263 FTCVFKKHFKTTPSEF 278
|
|
| PRK13501 |
PRK13501 |
HTH-type transcriptional activator RhaR; |
51-307 |
9.86e-07 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184092 [Multi-domain] Cd Length: 290 Bit Score: 49.52 E-value: 9.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 51 TFSWHWHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFgnantlhsghmVEGKDCHYWSITFD---PKIVYGFEKSLIQT 127
Cdd:PRK13501 30 TFVEHTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFY-----------IQAADHHSYESVHDlvlDNIIYCPERLHLNA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 128 KYVDLVVNGHEFSA-----LWFDGSEEWHGDIREKMKKVIELDlerpdfyEMEVQM---LLSEIWLVLLRHQGAFNQ--- 196
Cdd:PRK13501 99 QWHKLLPPLGPEQNqgywrLTTQGMAQARPIIQQLAQESRKTD-------SWSIQLtevLLLQLAIVLKRHRYRAEQahl 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 197 --DAESLNpkelARLKTILGFIHENYDkkitLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDEEYS 274
Cdd:PRK13501 172 lpDGEQLD----LIMSALQQSLGAYFD----MADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHR 243
|
250 260 270
....*....|....*....|....*....|...
gi 2105562895 275 ITDAAFSAGFTDAGYYSRVFRKCTGVSPRKFRK 307
Cdd:PRK13501 244 ISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQ 276
|
|
| PRK13502 |
PRK13502 |
HTH-type transcriptional activator RhaR; |
47-306 |
1.56e-06 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184093 [Multi-domain] Cd Length: 282 Bit Score: 48.90 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 47 YEFGTFSWHWHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHSghmvegkdchYWSIT--FDPKIVYGFEKSL 124
Cdd:PRK13502 26 YPQDVFAEHTHEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHS----------YTSVNdlVLQNIIYCPERLK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 125 IQTKYVDLV--VNGHEFSALWFDGSEEWhGDIREKMKKVIELDLERPDFYEMEVQMLLSEIWLVLLRHQGAFNQDAESLN 202
Cdd:PRK13502 96 LNVNWQAMIpgFQGAQWHPHWRLGSMGM-NQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLKRHRYATDDLPATSR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 203 PKELARLKTILGfihENYDKKITLTdiadsvHICKSECC------RFFKKHMNESLFDYLLRYRVEQSIPYLRDEEYSIT 276
Cdd:PRK13502 175 ETLLDKLITALA---NSLECPFALD------AFCQQEQCservlrQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMIS 245
|
250 260 270
....*....|....*....|....*....|
gi 2105562895 277 DAAFSAGFTDAGYYSRVFRKCTGVSPRKFR 306
Cdd:PRK13502 246 EISMQCGFEDSNYFSVVFTRETGMTPSQWR 275
|
|
| Cupin_2 |
pfam07883 |
Cupin domain; This family represents the conserved barrel domain of the 'cupin' superfamily ( ... |
50-95 |
3.38e-06 |
|
Cupin domain; This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).
Pssm-ID: 462300 [Multi-domain] Cd Length: 71 Bit Score: 44.17 E-value: 3.38e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 2105562895 50 GTFSWHWHS-EIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLH 95
Cdd:pfam07883 9 ESSPPHRHPgEDEFFYVLEGEGELTVDGEEVVLKAGDSVYFPAGVPH 55
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
209-306 |
8.90e-06 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 44.15 E-value: 8.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 209 LKTILGFIHENYDKKITLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDEEYSITDAAFSAGFTDAG 288
Cdd:PRK10219 7 IQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQ 86
|
90
....*....|....*...
gi 2105562895 289 YYSRVFRKCTGVSPRKFR 306
Cdd:PRK10219 87 TFSRVFRRQFDRTPSDYR 104
|
|
| PRK13500 |
PRK13500 |
HTH-type transcriptional activator RhaR; |
47-306 |
2.73e-05 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184091 [Multi-domain] Cd Length: 312 Bit Score: 45.09 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 47 YEFGTFSWHWHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHSghmvegkdchYWSIT--FDPKIVYGFEKSL 124
Cdd:PRK13500 56 YPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHS----------YASVNdlVLQNIIYCPERLK 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 125 IQTKYVDlVVNGHEFSAlwfdGSEEWH------GDIREKMKKVIELDLERPDFYEMEVQMLLSEIWLVLLRHQGAFNQ-- 196
Cdd:PRK13500 126 LNLDWQG-AIPGFSASA----GQPHWRlgsvgmAQARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSlp 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 197 --DAESLNPKELARLKTILgfihenyDKKITLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDEEYS 274
Cdd:PRK13500 201 ptSSETLLDKLITRLAASL-------KSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLL 273
|
250 260 270
....*....|....*....|....*....|..
gi 2105562895 275 ITDAAFSAGFTDAGYYSRVFRKCTGVSPRKFR 306
Cdd:PRK13500 274 ISDISTECGFEDSNYFSVVFTRETGMTPSQWR 305
|
|
| cupin_MelR-like_N |
cd06997 |
AraC/XylS family transcriptional regulators similar to Escherichia coli MelR, N-terminal cupin ... |
53-105 |
3.55e-04 |
|
AraC/XylS family transcriptional regulators similar to Escherichia coli MelR, N-terminal cupin domain; This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators, including Escherichia coli MelR, a transcription factor that controls melibiose utilization. MelR is encoded by the melR gene and is essential for melibiose-dependent triggering of the melAB operon that encodes products needed for melibiose catabolism and transport. Expression of melR is autoregulated by MelR, which represses the melR promoter by binding to a target that overlaps the transcript start. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Pssm-ID: 380401 Cd Length: 78 Bit Score: 38.51 E-value: 3.55e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2105562895 53 SWHWHSEIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHsgHMVEGKDC 105
Cdd:cd06997 13 TPHWHGQVEVNIPFDGDVEYLINEHAVSLNAGHIGLFWGGLPH--QLTDTGDC 63
|
|
| ManC |
COG0662 |
Mannose-6-phosphate isomerase, cupin superfamily [Carbohydrate transport and metabolism]; |
50-110 |
3.97e-04 |
|
Mannose-6-phosphate isomerase, cupin superfamily [Carbohydrate transport and metabolism];
Pssm-ID: 440426 [Multi-domain] Cd Length: 114 Bit Score: 39.35 E-value: 3.97e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2105562895 50 GTFSWHWHSEI-EMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHSGHMVEGKDCHYWSI 110
Cdd:COG0662 38 AELSLHVHPHRdEFFYVLEGTGEVTIGDEEVELKAGDSVYIPAGVPHRLRNPGDEPLELLEV 99
|
|
| PRK09978 |
PRK09978 |
DNA-binding transcriptional regulator GadX; Provisional |
201-309 |
6.32e-04 |
|
DNA-binding transcriptional regulator GadX; Provisional
Pssm-ID: 137624 [Multi-domain] Cd Length: 274 Bit Score: 40.68 E-value: 6.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 201 LNPKELARLKTIlgfIHENYDKKITLTDIADSVHICKSeccrFFKKHMNESLFDY---LLRYRVEQSIPYLRDEEYSITD 277
Cdd:PRK09978 139 LQPNMRTRVCTV---INNNIAHEWTLARIASELLMSPS----LLKKKLREEETSYsqlLTECRMQRALQLIVIHGFSIKR 211
|
90 100 110
....*....|....*....|....*....|..
gi 2105562895 278 AAFSAGFTDAGYYSRVFRKCTGVSPRKFRKDS 309
Cdd:PRK09978 212 VAVSCGYHSVSYFIYVFRNYYGMTPTEYQERS 243
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
270-307 |
1.11e-03 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 35.98 E-value: 1.11e-03
10 20 30
....*....|....*....|....*....|....*...
gi 2105562895 270 DEEYSITDAAFSAGFtDAGYYSRVFRKCTGVSPRKFRK 307
Cdd:pfam00165 6 STNLTIADIADELGF-SRSYFSRLFKKYTGVTPSQYRH 42
|
|
| COG3837 |
COG3837 |
Uncharacterized conserved protein, cupin superfamily [Function unknown]; |
50-110 |
1.33e-03 |
|
Uncharacterized conserved protein, cupin superfamily [Function unknown];
Pssm-ID: 443048 [Multi-domain] Cd Length: 115 Bit Score: 38.07 E-value: 1.33e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2105562895 50 GTFSWHWHS-EIEMTLVEDGEMIYQVNGADFHLQEGDVMFGNANTLHSGHMVEGKDCHYWSI 110
Cdd:COG3837 40 SSSPYHAHSaEEEFVYVLEGELTLRIGGEEYVLEPGDSVGFPAGVPHRLRNRGDEPARYLVV 101
|
|
| PRK11511 |
PRK11511 |
MDR efflux pump AcrAB transcriptional activator MarA; |
209-306 |
1.65e-03 |
|
MDR efflux pump AcrAB transcriptional activator MarA;
Pssm-ID: 236920 [Multi-domain] Cd Length: 127 Bit Score: 37.77 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 209 LKTILGFIHENYDKKITLTDIADSVHICKSECCRFFKKHMNESLFDYLLRYRVEQSIPYLRDEEYSITDAAFSAGFTDAG 288
Cdd:PRK11511 11 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQ 90
|
90
....*....|....*...
gi 2105562895 289 YYSRVFRKCTGVSPRKFR 306
Cdd:PRK11511 91 TLTRTFKNYFDVPPHKYR 108
|
|
| cupin_RmlC-like |
cd02208 |
RmlC-like cupin superfamily; This superfamily contains proteins similar to the RmlC (dTDP ... |
50-107 |
2.60e-03 |
|
RmlC-like cupin superfamily; This superfamily contains proteins similar to the RmlC (dTDP (deoxythymidine diphosphates)-4-dehydrorhamnose 3,5-epimerase)-like cupins. RmlC is a dTDP-sugar isomerase involved in the synthesis of L-rhamnose, a saccharide required for the virulence of some pathogenic bacteria. Cupins are a functionally diverse superfamily originally discovered based on the highly conserved motif found in germin and germin-like proteins. This conserved motif forms a beta-barrel fold found in all of the cupins, giving rise to the name cupin ('cupa' is the Latin term for small barrel). The active site of members of this superfamily is generally located at the center of a conserved barrel and usually includes a metal ion. The different functional classes in this superfamily include single domain bacterial isomerases and epimerases involved in the modification of cell wall carbohydrates, two domain bicupins such as the desiccation-tolerant seed storage globulins, and multidomain nuclear transcription factors involved in legume root nodulation.
Pssm-ID: 380338 [Multi-domain] Cd Length: 73 Bit Score: 35.92 E-value: 2.60e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2105562895 50 GTFSWHWHSEI-EMTLVEDGEMIYQVNGAD-FHLQEGDVMFGNANTLHSGHMVEGKDCHY 107
Cdd:cd02208 10 TSSPPHWHPEQdEIFYVLSGEGELTLDDGEtVELKAGDIVLIPPGVPHSFVNTSDEPAVF 69
|
|
| PRK10296 |
PRK10296 |
DNA-binding transcriptional regulator ChbR; Provisional |
273-312 |
6.89e-03 |
|
DNA-binding transcriptional regulator ChbR; Provisional
Pssm-ID: 182362 [Multi-domain] Cd Length: 278 Bit Score: 37.43 E-value: 6.89e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2105562895 273 YSITDAAFSAGFTDAGYYSRVFRKCTGVSPRKFRKDSYLI 312
Cdd:PRK10296 238 YSVTDIAFEAGYSSPSLFIKTFKKLTSFTPGSYRKKLTEF 277
|
|
| |
