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Conserved domains on  [gi|2113486156|ref|WP_226128405|]
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DUF4046 domain-containing protein [Clostridium estertheticum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4046 super family cl16187
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 14-102 2.39e-12

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


The actual alignment was detected with superfamily member pfam13255:

Pssm-ID: 404192  Cd Length: 90  Bit Score: 61.19  E-value: 2.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2113486156  14 IEIYELVLQGRIPNFPSGFWVNrSEEEAKHVAIKLLKYLIDERLKFNKKDVKTEVSKMFLTKYKLHTAskLFGRSAIR-- 91
Cdd:pfam13255   2 INIYDAAIEGKLAQLPRGFWGN-HEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYA--VYQRQSKGlt 78

                          90
                  ....*....|..
gi 2113486156  92 -YIINAYPEAGY 102
Cdd:pfam13255  79 eLLIDIFPEIGY 90
 
Name Accession Description Interval E-value
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 14-102 2.39e-12

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 61.19  E-value: 2.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2113486156  14 IEIYELVLQGRIPNFPSGFWVNrSEEEAKHVAIKLLKYLIDERLKFNKKDVKTEVSKMFLTKYKLHTAskLFGRSAIR-- 91
Cdd:pfam13255   2 INIYDAAIEGKLAQLPRGFWGN-HEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYA--VYQRQSKGlt 78

                          90
                  ....*....|..
gi 2113486156  92 -YIINAYPEAGY 102
Cdd:pfam13255  79 eLLIDIFPEIGY 90
 
Name Accession Description Interval E-value
DUF4046 pfam13255
Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. ...
 14-102 2.39e-12

Protein of unknown function (DUF4046); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 64 and 331 amino acids in length.


Pssm-ID: 404192  Cd Length: 90  Bit Score: 61.19  E-value: 2.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2113486156  14 IEIYELVLQGRIPNFPSGFWVNrSEEEAKHVAIKLLKYLIDERLKFNKKDVKTEVSKMFLTKYKLHTAskLFGRSAIR-- 91
Cdd:pfam13255   2 INIYDAAIEGKLAQLPRGFWGN-HEEEVQHRLKLCLRYVVLQKLKIKPQEILSEVTKPFLIKYKLFYA--VYQRQSKGlt 78

                          90
                  ....*....|..
gi 2113486156  92 -YIINAYPEAGY 102
Cdd:pfam13255  79 eLLIDIFPEIGY 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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