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Conserved domains on  [gi|2124825190|ref|WP_227059193|]
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hypothetical protein [Sutterella wadsworthensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4584 super family cl27787
Transposase [Mobilome: prophages, transposons];
1-72 7.08e-06

Transposase [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG4584:

Pssm-ID: 443641 [Multi-domain]  Cd Length: 484  Bit Score: 41.75  E-value: 7.08e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124825190   1 MTGISRNTIKKYVHRANEP---LTERQKVRNALDKLKPVIQRKFFAAEG-NCAVVCRQMKDEHQICINERRMRRFC 72
Cdd:COG4584    26 ELGISRNTVRKYLRRAEEWpelYPRRRPRPSKLDPYKEYIDEWLEEGPRvTAKRIWEELKEEHGYTGSYSTVRRYV 101
 
Name Accession Description Interval E-value
COG4584 COG4584
Transposase [Mobilome: prophages, transposons];
1-72 7.08e-06

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 443641 [Multi-domain]  Cd Length: 484  Bit Score: 41.75  E-value: 7.08e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124825190   1 MTGISRNTIKKYVHRANEP---LTERQKVRNALDKLKPVIQRKFFAAEG-NCAVVCRQMKDEHQICINERRMRRFC 72
Cdd:COG4584    26 ELGISRNTVRKYLRRAEEWpelYPRRRPRPSKLDPYKEYIDEWLEEGPRvTAKRIWEELKEEHGYTGSYSTVRRYV 101
 
Name Accession Description Interval E-value
COG4584 COG4584
Transposase [Mobilome: prophages, transposons];
1-72 7.08e-06

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 443641 [Multi-domain]  Cd Length: 484  Bit Score: 41.75  E-value: 7.08e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2124825190   1 MTGISRNTIKKYVHRANEP---LTERQKVRNALDKLKPVIQRKFFAAEG-NCAVVCRQMKDEHQICINERRMRRFC 72
Cdd:COG4584    26 ELGISRNTVRKYLRRAEEWpelYPRRRPRPSKLDPYKEYIDEWLEEGPRvTAKRIWEELKEEHGYTGSYSTVRRYV 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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