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Conserved domains on  [gi|2125509263|ref|WP_227296604|]
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MULTISPECIES: ABC transporter permease [Streptomyces]

Protein Classification

ABC transporter permease( domain architecture ID 10003065)

ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of substrates including gylcine betaine, choline, and carnitine

Gene Ontology:  GO:0140359|GO:0042626|GO:0055085|GO:0016020
PubMed:  25750732|24638992|31571164|27273632|26517919|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 22-217 3.90e-55

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 175.24  E-value: 3.90e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  22 GVWHRLAEHLYFSGVTLAVSCLIALPLALWLGHIGKGGGLAVNISNAGRAVPTLAVLVLLTLTPlGRhGDLPTFIALVLF 101
Cdd:COG1174    15 GILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLL-GI-GPAPAIIALVLY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263 102 AVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIATATLAAMAGKGGLGRIITAG 181
Cdd:COG1174    93 ALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLIFDG 172

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2125509263 182 FNLQDTPQVVAGAVLVALLALLVEGVLAGAGRVLNP 217
Cdd:COG1174   173 LQLNNTALILAGAILVALLALLVDLLLALLERLLTP 208
 
Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 22-217 3.90e-55

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 175.24  E-value: 3.90e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  22 GVWHRLAEHLYFSGVTLAVSCLIALPLALWLGHIGKGGGLAVNISNAGRAVPTLAVLVLLTLTPlGRhGDLPTFIALVLF 101
Cdd:COG1174    15 GILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLL-GI-GPAPAIIALVLY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263 102 AVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIATATLAAMAGKGGLGRIITAG 181
Cdd:COG1174    93 ALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLIFDG 172

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2125509263 182 FNLQDTPQVVAGAVLVALLALLVEGVLAGAGRVLNP 217
Cdd:COG1174   173 LQLNNTALILAGAILVALLALLVDLLLALLERLLTP 208
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 27-189 1.58e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.84  E-value: 1.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  27 LAEHLYFSGVTLAVSCLIALPLALWLG-HIGKGGGLAVNISNAGRAVPT-------LAVLVLLTLTPLGRHGDLPTFIAL 98
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILArKRGKLDRLLRRIIDLLLSLPSlvlglllVLLFGVLLGWGILPGLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  99 VLFAVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIATATLAAMAGKGGLGRII 178
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170
                  ....*....|.
gi 2125509263 179 TAGFNLQDTPQ 189
Cdd:cd06261   161 TGLLLIFAILF 171
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 89-189 2.66e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 60.39  E-value: 2.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  89 HGDLPTFIALVLFAVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIATATLAAM 168
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100
                  ....*....|....*....|..
gi 2125509263 169 -AGKGGLGRIITAGFNLQDTPQ 189
Cdd:pfam00528 130 lGSWPGLGLLLIEAILGYDYPE 151
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
90-181 7.74e-10

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 57.79  E-value: 7.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  90 GDLPTFIALVLFAVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIATATLAAMA 169
Cdd:PRK10952  207 GNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMI 286

                          90
                  ....*....|..
gi 2125509263 170 GKGGLGRIITAG 181
Cdd:PRK10952  287 AVGGLGQMVLRG 298
 
Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 22-217 3.90e-55

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 175.24  E-value: 3.90e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  22 GVWHRLAEHLYFSGVTLAVSCLIALPLALWLGHIGKGGGLAVNISNAGRAVPTLAVLVLLTLTPlGRhGDLPTFIALVLF 101
Cdd:COG1174    15 GILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLL-GI-GPAPAIIALVLY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263 102 AVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIATATLAAMAGKGGLGRIITAG 181
Cdd:COG1174    93 ALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLIFDG 172

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2125509263 182 FNLQDTPQVVAGAVLVALLALLVEGVLAGAGRVLNP 217
Cdd:COG1174   173 LQLNNTALILAGAILVALLALLVDLLLALLERLLTP 208
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 90-189 7.86e-15

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 70.95  E-value: 7.86e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  90 GDLPTFIALVLFAVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIATATLAAM- 168
Cdd:COG0600   124 GEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELl 203

                          90       100
                  ....*....|....*....|.
gi 2125509263 169 AGKGGLGRIITAGFNLQDTPQ 189
Cdd:COG0600   204 GASSGLGYLILDARQLLDTDL 224
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 27-189 1.58e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.84  E-value: 1.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  27 LAEHLYFSGVTLAVSCLIALPLALWLG-HIGKGGGLAVNISNAGRAVPT-------LAVLVLLTLTPLGRHGDLPTFIAL 98
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILArKRGKLDRLLRRIIDLLLSLPSlvlglllVLLFGVLLGWGILPGLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  99 VLFAVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIATATLAAMAGKGGLGRII 178
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170
                  ....*....|.
gi 2125509263 179 TAGFNLQDTPQ 189
Cdd:cd06261   161 TGLLLIFAILF 171
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 89-189 2.66e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 60.39  E-value: 2.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  89 HGDLPTFIALVLFAVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIATATLAAM 168
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100
                  ....*....|....*....|..
gi 2125509263 169 -AGKGGLGRIITAGFNLQDTPQ 189
Cdd:pfam00528 130 lGSWPGLGLLLIEAILGYDYPE 151
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
90-181 7.74e-10

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 57.79  E-value: 7.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  90 GDLPTFIALVLFAVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIATATLAAMA 169
Cdd:PRK10952  207 GNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMI 286

                          90
                  ....*....|..
gi 2125509263 170 GKGGLGRIITAG 181
Cdd:PRK10952  287 AVGGLGQMVLRG 298
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 29-183 7.84e-10

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 56.60  E-value: 7.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  29 EHLYFSGVTLAVSCLIALPLALWLgHIGKGGGLAVN---------ISNAGRAVPtlavlvlltltplgrhgdlptFIALV 99
Cdd:COG2011    18 ETLYMVGVSTLIAVLLGLPLGVLL-VLTRPGGLLPNpvlyrvlgvIVNIFRSIP---------------------FIILL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263 100 LFAVPplLTNAYIG---------------------------MREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGI 152
Cdd:COG2011    76 VALIP--LTRLIVGtsigttaaivpltiaaipffarlvenaLREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGL 153

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2125509263 153 RLAAVQVIATATLAAMAGKGGLGRI-ITAGFN 183
Cdd:COG2011   154 TVTLISLIGYSAMAGAVGGGGLGDLaIRYGYQ 185
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
105-174 1.97e-08

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 53.40  E-value: 1.97e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2125509263 105 PLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAA----VQVIATATLAAMAGKGGL 174
Cdd:PRK11365  138 PIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALglmwLTLIVAETISANSGIGYL 211
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
96-161 3.82e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 50.16  E-value: 3.82e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2125509263  96 IALVLFAVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIA 161
Cdd:COG1178   144 LVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLA 209
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
31-166 1.60e-06

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 48.23  E-value: 1.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  31 LYFSGVTLAVSCLIALPLALWLG-HIGKGGGLAVNISNAGRAVPTLA------VLVLLTLTPLGRHGDLPTFIALVLFAV 103
Cdd:COG1178   344 LLLALLAALLAVLLALLLAYLVRrRRGRLARLLDRLAMLPYAVPGIVlglgllLLFNRPLPLLLYGTLAILVLAYVVRFL 423

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2125509263 104 PPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVI----ATATLA 166
Cdd:COG1178   424 PFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMkelsATLLLR 490
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 96-151 7.08e-06

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 45.49  E-value: 7.08e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2125509263  96 IALVLFAVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTG 151
Cdd:COG1177   136 LAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAG 191
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 95-151 2.77e-05

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 43.82  E-value: 2.77e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2125509263  95 FIALVLFAVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTG 151
Cdd:PRK09500  131 LFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAG 187
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 95-155 5.07e-05

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 43.20  E-value: 5.07e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2125509263  95 FIALVLFAVPPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLA 155
Cdd:COG0555   140 VLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALA 200
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 94-152 5.53e-05

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 43.21  E-value: 5.53e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2125509263  94 TFIALV----LFAVPPLltnaYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGI 152
Cdd:COG1176   157 VVIGLVyvylPFMVLPL----YAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGS 215
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 93-145 2.10e-04

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 41.23  E-value: 2.10e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2125509263  93 PTFIALVLFAvppLLTNAYI------GMREVDRAVVEAARGMGMSGGQVFRRVELPLAY 145
Cdd:COG4160    94 PWFCALLALT---LNTAAYTaeifrgAIRAVPKGEIEAARALGMSRWQTFRRIILPSAL 149
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 101-151 8.36e-04

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 39.60  E-value: 8.36e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2125509263 101 FAVPPLLTnayiGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTG 151
Cdd:PRK15050  175 FVVRPLLA----AFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAG 221
ArtQ COG4215
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
114-143 1.88e-03

ABC-type arginine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443361 [Multi-domain]  Cd Length: 238  Bit Score: 38.18  E-value: 1.88e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 2125509263 114 MREVDRAVVEAARGMGMSGGQVFRRVELPL 143
Cdd:COG4215   126 FLAVPKGQIEAARAYGMSRWQVFRRILLPQ 155
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 96-149 1.97e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 38.13  E-value: 1.97e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125509263  96 IALVLFavppllTNAYI------GMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVM 149
Cdd:COG0765    93 IALTLN------SAAYLaeivraGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIIL 146
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
116-177 5.70e-03

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 36.63  E-value: 5.70e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2125509263 116 EVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRLAAVQVIATATLAAMAGKGGLGRI 177
Cdd:PRK10782  114 EIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQI 175
PRK10160 PRK10160
taurine ABC transporter permease TauC;
96-154 8.19e-03

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 36.69  E-value: 8.19e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2125509263  96 IALVLFAvpPLLTNAYIGMREVDRAVVEAARGMGMSGGQVFRRVELPLAYPMVMTGIRL 154
Cdd:PRK10160  149 IYLAIFA--PVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRI 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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