|
Name |
Accession |
Description |
Interval |
E-value |
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
210-552 |
3.57e-159 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 457.05 E-value: 3.57e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 210 ENYKYSFNTRDFLLKNGLYIAIILVFIFLCIITPikknglQLFTVNNILSIMQQASPRMFLALGVSGLIMLAGTDLSVGR 289
Cdd:COG4211 1 EKKIKKKKIKNFLLNNAIYIVLLLLIIAIIIINP------NFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 290 MVGMGMTAATIIMHNGPNTGSVFghvFDFSTMPvggrILLALVVCVALCTMFTTIAGFFAAKFKMHPFISTMANMLVIFG 369
Cdd:COG4211 75 MVGLAAVISASLLQSGDYAGKFF---PNLPELP----IIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 370 LVTYSTK---GVSFGGIDQSIP----GKIIPKVGGFPTIILWAVAAVVIVWFIWNKTKFGKNLYAVGGNPEAASVSGISV 442
Cdd:COG4211 148 INSIYTDrpgAQPIGGLDESFTnfaqGSINIGGFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNV 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 443 FKVTLGAFMLAGILYGFGSWLECIRmIGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKISGVVVGVLIFTALTYSLTIL 522
Cdd:COG4211 228 FKTLIIVYALAGALYGFAGFLEAAR-TGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFI 306
|
330 340 350
....*....|....*....|....*....|
gi 2125644400 523 GIDTNLQFVFSGIIILIAVTLDCLKYVRKN 552
Cdd:COG4211 307 GVNPYWQYIIKGLIIIAAVALDIRKYLKKK 336
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
217-552 |
1.53e-93 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 289.28 E-value: 1.53e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 217 NTRDFLLKNGLYIAIILVFIFLCIITPikknglQLFTVNNILSIMQQASPRMFLALGVSGLIMLAGTDLSVGRMVGMGMT 296
Cdd:PRK09478 8 SFLTYLKEGGIYVVLLVLLAIIIIQDP------TFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 297 AATIIMHNGPNTGSVFGHVfdfSTMPVGGRILLALVVCValctMFTTIAGFFAAKFKMHPFISTMANMLVIFGL--VTYS 374
Cdd:PRK09478 82 VAATLLQSMDNANKVFPEL---ATMPIALVILIVCAIGA----VIGLINGLIIAYLNVTPFIATLGTMIIVYGInsLYYD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 375 TKGVS-FGGIDQSIP----GKIIPKVGGFPTIILWAVAAVVIVWFIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLGA 449
Cdd:PRK09478 155 FVGASpISGFDSGFStfaqGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMI 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 450 FMLAGILYGFGSWLECIRmIGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKISGVVVGVLIFTALTYSLTILGIDTNLQ 529
Cdd:PRK09478 235 YALSGVFYAFGGMLEAGR-IGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQ 313
|
330 340
....*....|....*....|...
gi 2125644400 530 FVFSGIIILIAVTLDCLKYVRKN 552
Cdd:PRK09478 314 YIIKGAIIIFAVALDSLKYARKK 336
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
219-551 |
5.62e-88 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 274.29 E-value: 5.62e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 219 RDFLLKNGLYIAIILVFIFLCIITPikknglQLFTVNNILSIMQQASPRMFLALGVSGLIMLAGTDLSVGRMVGM-GMTA 297
Cdd:COG1172 13 RRLLPELGLLLALVLLLVVFSILSP------GFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALsGVVA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 298 ATIIMHNGPNtgsvfghvfdfstmpvggrILLALVVCVALCTMFTTIAGFFAAKFKMHPFISTMANMLVIFGLVTYSTKG 377
Cdd:COG1172 87 ALLLVALGLP-------------------ILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 378 VSFGGIDQSIPGKIIPKVGGFPTIILWAVAAVVIVWFIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILY 457
Cdd:COG1172 148 RPISGLPDAFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLA 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 458 GFGSWLECIRMiGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKISGVVVGVLIFTALTYSLTILGIDTNLQFVFSGIII 537
Cdd:COG1172 228 GLAGILLAARL-GSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAII 306
|
330
....*....|....
gi 2125644400 538 LIAVTLDCLKYVRK 551
Cdd:COG1172 307 LLAVLLDRLRRRRR 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
264-544 |
6.32e-80 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 251.17 E-value: 6.32e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 264 ASPRMFLALGVSGLIMLAGTDLSVGRMVGMGMTAATIIMHNGpntgsvfghvfdfstmpvGGRILLALVVCVALCTMFTT 343
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNA------------------GLPIPLAILAALAVGALIGL 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 344 IAGFFAAKFKMHPFISTMANMLVIFGLVTYSTKGVSFGGIDQSIPGKII-PKVGGFPTIILWAVAAVVIVWFIWNKTKFG 422
Cdd:cd06579 63 LNGLLVAYLRIPPFIVTLGTMFILRGLALLITGGRPISGLPPLFSFFLGgGLILGIPVPVLIALAVALVAWFLLRRTRFG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 423 KNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLECIRMiGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKI 502
Cdd:cd06579 143 RYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARL-GSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSV 221
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2125644400 503 SGVVVGVLIFTALTYSLTILGIDTNLQFVFSGIIILIAVTLD 544
Cdd:cd06579 222 LGTLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
196-544 |
3.54e-57 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 196.10 E-value: 3.54e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 196 MSNFSFAEKQAQKIENYKySFNTRDFllknGLYIAIILVFIFLCIITpikkNGLqLFTVNNILSIMQQASPRMFLALGVS 275
Cdd:COG4214 1 MSTTAAPGGAVRSLRRLL-GGDLRSL----GMIIALVVIWIVFQILT----GGT-FLTPRNLSNLLLQNSYIGILAIGMV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 276 GLIMLAGTDLSVGRMVGM-GMTAATIIMHNGpntgsvfghvfdfstMPVggriLLALVVCVALCTMFTTIAGFFAAKFKM 354
Cdd:COG4214 71 LVILLGHIDLSVGSVSGFvGAVAAVLMVNWG---------------LPW----WLAILAALLVGALIGAWQGFWVAYVGI 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 355 HPFISTMANMLVIFGLVTYSTKGVSFGGID---QSIPGKIIPKVGGFPTIILWAVAAVVIVWFIW--------------- 416
Cdd:COG4214 132 PSFIVTLAGMLAFRGLTLLVLGGGTIAPFDptfQAIGNGFLPDILGTLSWVLGAVAVAAYVALQLrsrrrrrryglpvep 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 417 ----------------------------------------------NKTKFGKNLYAVGGNPEAASVSGISVFKVTLGAF 450
Cdd:COG4214 212 lwlfvlklallavlilgavyllnsyrgipivvlillvlvvvytfvlTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVF 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 451 MLAGILYGFGSWLECIRmIGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKISGVVVGVLIFTALTYSLTILGIDTNLQF 530
Cdd:COG4214 292 VNMGVLAALAGIVFAAR-LNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQ 370
|
410
....*....|....
gi 2125644400 531 VFSGIIILIAVTLD 544
Cdd:COG4214 371 IVKGLVLLLAVAFD 384
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
229-544 |
9.35e-56 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 190.53 E-value: 9.35e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 229 IAIILVFIFLCI----ITPikknglQLFTVNNILSIMQQASPRMFLALGVSGLIMLAGTDLSVGRMVGmgmTAATIIMHn 304
Cdd:COG4158 30 VGMLPVLILLCIgfelLTP------NFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILA---ASAVVAVL- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 305 gpntgsvfghvfdFSTMPVGGriLLALVVCVALCTMFTTIAGFFAAKFKMHPFISTMANMLVIFGLVTYSTKGVSFggID 384
Cdd:COG4158 100 -------------VSLLPGLG--LLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTV--FN 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 385 QSIPGKII--PKVGGFPTIILWAVAAVVIVWFIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSW 462
Cdd:COG4158 163 PDLPFAWIgnGYLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 463 LECIRMIGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKISGVVVGVLIFTALTYSLTILGIDTNLQFVFSGIIILIAVT 542
Cdd:COG4158 243 MSAARLYAANGLQLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVA 322
|
..
gi 2125644400 543 LD 544
Cdd:COG4158 323 LD 324
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
215-544 |
2.33e-48 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 170.28 E-value: 2.33e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 215 SFNTRDFLLKNGLYIAIILVFIFLCIITPikknglQLFTVNNILSIMQQASPRMFLALGVSGLIMLAGTDLSVGRMVGM- 293
Cdd:PRK09512 9 RYFTKAWLIEQKSLIALLVLIAIVSTLSP------NFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALt 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 294 GMTAATIIMHNGPntgsvfghvfdfstmpvggrILLALVVCVALCTMFTTIAGFFAAKFKMHPFISTMANMLVIFGLVTY 373
Cdd:PRK09512 83 GAVAASIVGIEVN--------------------ALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMV 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 374 STKG--VSFGGIDQS-IPGKI-IPKVGGFPTIIlWAVAAV-VIVWFIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLG 448
Cdd:PRK09512 143 YTDGspINTGFTDNAdLFGWFgIGRPLGIPTPV-WIMAIVfLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKII 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 449 AFMLAGILYGFGSWLECIRMiGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKISGVVVGVLIFTALTYSLTILGIDTNL 528
Cdd:PRK09512 222 VYALCGLLAALAGIIEVARL-SSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYY 300
|
330
....*....|....*.
gi 2125644400 529 QFVFSGIIILIAVTLD 544
Cdd:PRK09512 301 QMIVKAVVILLAVLVD 316
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
196-551 |
4.34e-43 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 156.76 E-value: 4.34e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 196 MSNFSFAEKQAQKIENYKYSFNTRDFLLKNGLYIAIILVFIFLCIITPikknglQLFTVNNILSimqqasprmfLALGVS 275
Cdd:PRK11285 1 MSSVSTSGSGAAAAAPPKSRFSLWRIWDQYGMLVVFAVLFIACSLFVP------NFASFINMKG----------LGLAIS 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 276 GLIMLAGT----------DLSVGRMVGM-GMTAATIIMhngpNTGSVFghvfdfstMPVGGRILLALVVCValctmfttI 344
Cdd:PRK11285 65 MIGMVACTmlfclasgdfDLSVASVVAFaGVVTAVVIN----ATESLW--------LGVAAGLLLGAAVGL--------V 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 345 AGFFAAKFKMHPFISTMANMLVIFGLVTYSTKGVSFGGIDQSIPGKIIPKVGGFPTIILWAVAAVVIVWFIWNKTKFGKN 424
Cdd:PRK11285 125 NGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRN 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 425 LYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLECIRMiGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKISG 504
Cdd:PRK11285 205 TLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRM-TSGQPMTSIGFELIVISACVLGGVSLKGGIAKISG 283
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 2125644400 505 VVVGVLIFTALTYSLTILGIDTNLQFVFSGIIILIAVTLDCLKYVRK 551
Cdd:PRK11285 284 VVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQRAK 330
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
216-546 |
4.73e-42 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 153.00 E-value: 4.73e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 216 FNTRDFLLKNGLYIAIILVFIFLCIITPIkknglQLFTVNNILSIMQQASPRMFLALGVSGLIMLAGTDLSVGRMVGM-G 294
Cdd:PRK09699 3 FNFALFWDKYGTFFILAIIVAIFGSLSPE-----YFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALsG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 295 M-TAATIIMHNGPNTGSVFGHVFdfstmpVGGrILLALVVCVALCTmfttiagffaakfKMHPFISTMANMLVIFGLVTY 373
Cdd:PRK09699 78 MvTAKLMLAGVDPFLAALIGGVL------VGG-ALGAINGCLVNWT-------------GLHPFIITLGTNAIFRGITLV 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 374 STKGVSFGGIDQSIPGKIIPKVGGFPTIILWAVAAVVIVWFIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLA 453
Cdd:PRK09699 138 ISDANSVYGFSFDFVNFFAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIIS 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 454 GILYGFGSWLECIRmIGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKISGVVVGVLIFTALTYSLTILGIDTNLQFVFS 533
Cdd:PRK09699 218 GVCAGLAGVVSTAR-LGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVM 296
|
330
....*....|...
gi 2125644400 534 GIIILIAVTLDCL 546
Cdd:PRK09699 297 GGLIIAAVALDRL 309
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
217-544 |
3.25e-41 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 152.61 E-value: 3.25e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 217 NTRDFllknGLYIAIILVFIFLCIITpikkNGLqLFTVNNILSIMQQASPRMFLALGVSgLIMLAG-TDLSVGRMVGM-G 294
Cdd:NF040906 1 NLRQY----GMLIALVAIVVLFQILT----GGI-LLRPLNVTNLILQNSYILILAIGML-LVIIAGhIDLSVGSVVAFvG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 295 MTAATIIMHNGpntgsvfghvfdfstMPVggriLLALVVCVALCTMFTTIAGFFAAKFKMHPFISTMANMLVIFGLVTYS 374
Cdd:NF040906 71 AVAAVLMVNWG---------------MPW----WLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVV 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 375 TKGVSFGGID---QSIPGKIIPKVGG-----FPTIILWAVAAVVIVW--------------------------------- 413
Cdd:NF040906 132 LGGQSIGPFPdgfQKISSGFLPDLFGgtglhLLTLLLGVLAAAALVWsqlrgrrrrikyglevepmalfiaklvliaaai 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 414 ----------------------------FIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLEC 465
Cdd:NF040906 212 lfftyllasyrglpnvliilgvlilvysFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFA 291
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2125644400 466 IRMiGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKISGVVVGVLIFTALTYSLTILGIDTNLQFVFSGIIILIAVTLD 544
Cdd:NF040906 292 ARL-NSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
256-541 |
8.64e-33 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 126.60 E-value: 8.64e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 256 NILSIMQQASPRMFLALGVSGLIMLAGT-DLSVGRMVGMGMTAATIIMHNGPNTgsvfghvfdfstmpvggrILLALVVC 334
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGIAGViNLGHGGFMMLGAYVAAMLLNLLGPG------------------LWLALPVG 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 335 VALCTMFTTIAGFFAAKFKMHPFISTMANMLVIFGLVTYSTKGVSFGGIDQSIPGKIIPKVGGFP-----TIILWAVAAV 409
Cdd:pfam02653 63 ILVGAAVGLLIGILTLRLKINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLsfafaFIFLLALLLV 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 410 VIVWFIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLECIRMIGSGSAAYGQGWEMDAIAACV 489
Cdd:pfam02653 143 LALWLLLYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGVGLGLDAIAAVV 222
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2125644400 490 VggvsftGGIGKISGVVVGVLIF-TALTYSLTILGIDTNLQFVFSGIIILIAV 541
Cdd:pfam02653 223 L------GGAGSPIGVVIGSLIIgLVQSLGLGALGSPPELSLLVLGALLILVL 269
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
271-511 |
1.39e-26 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 110.04 E-value: 1.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 271 ALGVSGLIMLAGTDLSVGRMVGM-GMTAATIIMHNGpntgsvfghvfdfstMPVggriLLALVVCVALCTMFTTIAGFFA 349
Cdd:PRK11618 49 AVGMTFVILSGGIDLSVGSVIAFtGVFLAKLIGDYG---------------WSP----LLAFPLVLVMGAAFGAFMGALI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 350 AKFKMHPFISTMANMLVIfglvtystKGVSFGGIDQSIP------------GKIIPKVGGFPTIILWAVAAVVIVWFIWN 417
Cdd:PRK11618 110 HYLKLPAFIVTLAGMFLA--------RGVSFLVSEESIPinhpfydtlsslAWKLPGGGRLSAMALIMLAVVAIGIFLAH 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 418 KTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLECIRMIgSGSAAYGQGWEMDAIAACVVGGVSFTG 497
Cdd:PRK11618 182 RTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTS-AGYALAAVGVELDAIAAVVIGGTLLTG 260
|
250
....*....|....
gi 2125644400 498 GIGKISGVVVGVLI 511
Cdd:PRK11618 261 GVGTVLGTLFGVLI 274
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
251-544 |
2.08e-24 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 104.43 E-value: 2.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 251 LFTVNNILSIMQQASPRMFLALGVS-----GLIMLAGTdlsvGRMVgMGMTAATIIMHNgpntgsvfghvfdFSTMPVGG 325
Cdd:COG4603 53 FGSPYGLGETLVKATPLILTGLAVAvafraGLFNIGAE----GQLY-LGALAAAAVGLA-------------LPGLPGPL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 326 RILLALVVCVALCTMFTTIAGFFAAKFKMHPFISTManML--VIFGLVTYSTKGV---SFGGIDQSIPgkiIPKVGGFPT 400
Cdd:COG4603 115 HLPLALLAGALAGALWAAIPGLLKARFGVNEVITTL--MLnyIALYLVNYLVRGPlrdPGSGFPQTPP---IPESARLPR 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 401 I---------ILWAVAAVVIVWFIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLECI----R 467
Cdd:COG4603 190 LlpgtrlhlgLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEVLgvqgR 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 468 MIGSGSAAYGqgweMDAIAACVVGGvsftggiGKISGVVVGVLIFTALTYS----LTILGIDTNLQFVFSGIIILIAVTL 543
Cdd:COG4603 270 LTPGFSPGYG----FTGIAVALLGR-------NNPLGIILAALLFGALYVGgdamQRALGVPSEIVDVIQGLIILFVLAA 338
|
.
gi 2125644400 544 D 544
Cdd:COG4603 339 D 339
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
264-541 |
6.33e-24 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 100.21 E-value: 6.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 264 ASPRMFLALGV-----SGLIMLAGTdlsvGRMVGMGMTAATIIMHNGpntgsvfghvfdfstMPVGGRILLALVVCVALC 338
Cdd:cd06580 1 ATPLILAALGVaisfrAGVFNIGLE----GQMLLGAFAAALVALYLG---------------LPATGSLPLGLLAAALAG 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 339 TMFTTIAGFFAAKFKMHPFISTMANMLVIFGLVTYstkgvsfggidqsipgkiipkvggfptIILWAVAAVVIVWFIWNK 418
Cdd:cd06580 62 ALWALLPALLKAKLGVNEVISGLMLNYIALGLTSY---------------------------LLLLALLLVILVWLLLYR 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 419 TKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLECIRMIGSGSA--AYGQGWemDAIAACVVGGvsft 496
Cdd:cd06580 115 TRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVLGVQGRFTEgmSAGYGF--IAIAVALLGR---- 188
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2125644400 497 ggiGKISGVVVGVLIFTALTYSLTILGIDTNLQFVFSGIIILIAV 541
Cdd:cd06580 189 ---WNPLGILLAALLFGALEAGGIALQRSGGVPSELVQVLPGIIV 230
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
269-540 |
1.60e-19 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 88.49 E-value: 1.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 269 FLALGVSGLIMLAG-TDLSVGRMVGMGMTAATIIMHNGPNtgsvfghvfDFSTMPVGgrILLALVVcvALCTmfttiaGF 347
Cdd:cd06574 6 ILALGVYIVFRILGfPDLTVDGSFPLGAAVAAILIVAGYN---------PWLALIAA--ILAGAAA--GLVT------GF 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 348 FAAKFKMHPFISTMANMLVIFGLVTYSTKGVSFGGIDQSI----PGKIIPKVGGFPTIILWAVAAVVIVWFIW-NKTKFG 422
Cdd:cd06574 67 LHTRLKINGLLAGILIMIGLYSINLRIMGGPNIPLGTRDTllglLLLFGISGTLSIPVVLLLIVLLVLFLVIWfLRTKLG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 423 KNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLECIRMigsGSAAY--GQGWEMDAIAACVVGGVSFTG--G 498
Cdd:cd06574 147 LAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQ---GFADVnmGIGTGVIGLAAVIIGGAIVGRrtI 223
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2125644400 499 IGKISGVVVGVLIF-TALTYSLTILGIDTNLQFVFSGIIILIA 540
Cdd:cd06574 224 KASILGVIIGAILYrIALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
221-544 |
2.08e-19 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 89.79 E-value: 2.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 221 FLLKN---GLYIAIILVFIFLCIITPikknglQLFTVNNILSIMQQASPRMFLALGVSGLIMLAGTDLSVGRMVGMGMTA 297
Cdd:PRK15432 4 FIQNNrelTALLAIVLLFVLLGFLDR------QYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 298 ATIIMHNGPNTGSVFghvfdfstmpvggriLLALVvCVALCTMFTtiaGFFAAKFKMHPFISTMANMLVIFGLVTYSTKG 377
Cdd:PRK15432 78 VGMLLNAGYSLPVAC---------------LATLL-LGLLAGFFN---GVLVAWLRIPAIVATLGTLGLYRGIMLLWTGG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 378 VSFGGIDQSIPGKIIPKVGGFPTIILWAVAAVVIVWFIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILY 457
Cdd:PRK15432 139 KWIEGLPAELKQLSAPILLGISPIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMA 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 458 G-----FGSwlecirMIGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKISGVVVGVLIFTALTYSLTILGIDTNLQFVF 532
Cdd:PRK15432 219 AlagivFAS------QIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFI 292
|
330
....*....|..
gi 2125644400 533 SGIIILIAVTLD 544
Cdd:PRK15432 293 AGLVLLGVLVFD 304
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
308-531 |
1.19e-17 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 83.97 E-value: 1.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 308 TGSVFGHVFDFSTmpvgGRILLALVVCVALCTMFTTIAGFFAAKFKMHPFISTMA-NMLV----------IFGLVTYSTK 376
Cdd:COG1079 47 MGAFAGFAVAYLT----GSPWLGLLAAALAGALLALLHAFLTITLRANQIVSGLAlNLLAlgltaflgrlLFGQGGQTPS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 377 GVSFGGIDqsIPG-KIIPKVGGF-----PTIILwAVAAVVIVWFIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLGAF 450
Cdd:COG1079 123 IPGLPPIP--IPGlSDIPVLGPLlfgqsPLVYL-ALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAV 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 451 MLAGILYGFG----------SWLEciRMIGsgsaayGQGWeMdAIAACVVGGvsftggiGKISGVVVGVLIF---TALTY 517
Cdd:COG1079 200 LIGGALAGLGgaylslgyvgSFTE--GMTA------GRGF-I-ALAAVIFGR-------WRPLGALLAALLFgfaDALQL 262
|
250
....*....|....
gi 2125644400 518 SLTILGIDTNLQFV 531
Cdd:COG1079 263 RLQALGIGIPSQLL 276
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
328-541 |
1.95e-17 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 82.49 E-value: 1.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 328 LLALVVCVALCTMFTTIAGFFAAKFKMHPF-ISTMANMLVIFGLVTYS---TKGVS-FGGIDQSIPGKIIPKVGGFPTII 402
Cdd:cd06581 48 WLALLAAGLVAALVGLLLGLPALRLRGVYFaIATLAFAEIVRLLALNWsslTGGSNgLSGIPPPLLGGLLLSSPLAFYYL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 403 LWAVAAVViVWFIWN--KTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLECIRMIGSGSAAYGQGW 480
Cdd:cd06581 128 VLAVLLLV-LLLLRRlvRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFAL 206
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2125644400 481 EMDAIAACVVggvsftGGIGKISGVVVGVLIFTALTYSLTILGidTNLQFVFSGIIILIAV 541
Cdd:cd06581 207 SIELLLMVVL------GGLGSLLGPVLGAALLVLLPELLRSLG--PGLRLLVFGLLLILVV 259
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
320-541 |
1.33e-16 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 80.13 E-value: 1.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 320 TMPVGGRILLALVVCVALCTMFTTIAGFFAAKFKMHPF-ISTMAnMLVIFGLVTYSTKGVsFGGID--QSIPGkiiPKVG 396
Cdd:COG4177 50 TTHLGLPFWLALLLAGLVAALLGLLIGLPALRLRGDYLaIATLA-FAEIVRLLALNLESL-TGGADglSGIPR---PTLF 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 397 GF----PTIILWAVAAVVIV--WFIWN--KTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLEC--I 466
Cdd:COG4177 125 GLdlgsPLAFYYLVLALLVLvlLLLRRlvRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAhyV 204
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2125644400 467 RMIGSGSAAYGQGweMDAIAACVVggvsftGGIGKISGVVVGVLIFTALTYSLTILgidTNLQFVFSGIIILIAV 541
Cdd:COG4177 205 GFVSPESFSFLLS--IEILLMVVL------GGLGSLLGPVLGAVLLVLLPELLRSL---PEYRLLIFGLLLILVV 268
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
327-541 |
2.80e-14 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 73.56 E-value: 2.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 327 ILLALVVCVALCTMFTTIAGFFAAKF-----KMHPFISTMANMLVIFGLVTystkgVSFGGIDQSIP----------GKI 391
Cdd:COG0559 61 LWLALLLAVLVAALLGVLLERLVIRPlrgapPLALLLATIGLSLVLQGLVL-----LIFGADPRSFPallsgsvelgGVS 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 392 IPKVGGFptIILWAVAAVVIVWFIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLecIRMIGS 471
Cdd:COG0559 136 IPAYRLF--IIVVALVLLAALWLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVL--LAPIYS 211
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 472 GSAAYGQGWEMDAIAACVVggvsftGGIGKISGVVVGVLIFtALTYSLTILGIDTNLQFVFSgIIILIAV 541
Cdd:COG0559 212 VSPTMGFLLGLKAFAAVVL------GGLGSIPGAVVGGLLL-GLAESLGAAYLPSGYKDVVA-FVLLILV 273
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
324-541 |
4.47e-14 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 72.46 E-value: 4.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 324 GGRILLALVVCVALctmfTTIAGFFAAKFKMHPFIS-TMANMLVIFGLVTYSTKGVS--FGGIDQSIPGKIIPK---VGG 397
Cdd:cd06582 48 GLPFWLALLLALLV----AALLGVLLERLVLRPLRGaPLLTLLITFGGLLILLQGLLliFGGDPRVPPPPLLSGsveLGG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 398 FP------TIILWAVAAVVIVWFIWNKTKFGKNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLecIRMIGS 471
Cdd:cd06582 124 VTippyrlFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVL--LAPITG 201
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 472 GSAAYGQGWEMDAIAACVVggvsftGGIGKISGVVVGVLIFtALTYSLTILGIDTNLQFVFSgIIILIAV 541
Cdd:cd06582 202 VSPTMGLLLLLKAFAAVVL------GGLGSIPGAVVGGLLL-GLAESLAAAYLSSGYKDAVA-FVLLILV 263
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
270-541 |
9.66e-12 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 66.39 E-value: 9.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 270 LALGVSGLIMLAGTDLSVGRMVGMGMTAATIIMHNGpntgsvfghvfdfstMPVGGRILLALVVCvALCTMFTtiAGFFA 349
Cdd:PRK15038 48 VALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSG---------------VPMPLAILLTLLLG-ALCGLIN--AGLII 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 350 AKfKMHPFISTMANMLvIFGLVTYSTKGVS-------FGGIDQSIPGKIIPKVGGFPTIILWAVAAVVIVWFIWNKTKFG 422
Cdd:PRK15038 110 YT-GVNPLVITLGTLY-LFGGSALLLSGMAgatgyegIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAG 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 423 KNLYAVGGNPEAASVSGISVFKVTLGAFMLAGILYGFGSWLeCIRMIGSGSAAYGQGWEMDAIAACVVGGVSFTGGIGKI 502
Cdd:PRK15038 188 RNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVL-LVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSI 266
|
250 260 270
....*....|....*....|....*....|....*....
gi 2125644400 503 SGVVVGVLIFTALTYSLTILGIDTNLQFVFSGIIILIAV 541
Cdd:PRK15038 267 IGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
11-184 |
1.00e-06 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 50.68 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 11 HDEELALRKPIEdyvgKIQAEIDELREEGTNKVLEYSEEIEVLKRdkiytksekearISELNGKLQKAKEIEAKNKQ--- 87
Cdd:COG1340 101 LAELNKAGGSID----KLRKEIERLEWRQQTEVLSPEEEKELVEK------------IKELEKELEKAKKALEKNEKlke 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 88 -------------PINDKIA-VAEKYLKDHYQ-TDYYNKVVESNKyEVQKAKADYDKKLKELEKEHKDILSGLSDKEEIK 152
Cdd:COG1340 165 lraelkelrkeaeEIHKKIKeLAEEAQELHEEmIELYKEADELRK-EADELHKEIVEAQEKADELHEEIIELQKELRELR 243
|
170 180 190
....*....|....*....|....*....|..
gi 2125644400 153 EENFIYKNRLFDAKLEytKNMQEAKDRKHDAF 184
Cdd:COG1340 244 KELKKLRKKQRALKRE--KEKEELEEKAEEIF 273
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
13-180 |
1.87e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 13 EELA-LRKPIEDYvGKIQAEIDELREEgTNKVLEYSEEIEVLKRDKIYTKSEKEARISELNGKLQKAKEIEAKnkqpind 91
Cdd:PRK03918 221 EELEkLEKEVKEL-EELKEEIEELEKE-LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 92 kiavAEKYLKDHYQTDYYNKVvesnKYEVQKAKADYDKKLKELEKEHKDILSGLSDKEEIKEENFIYKNRLFDAKlEYTK 171
Cdd:PRK03918 292 ----AEEYIKLSEFYEEYLDE----LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE-ERHE 362
|
....*....
gi 2125644400 172 NMQEAKDRK 180
Cdd:PRK03918 363 LYEEAKAKK 371
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
10-154 |
4.01e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.90 E-value: 4.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 10 SHDEELALRKPIEDYVGK---IQAEIDELREEGTNKVLEYSEEIEVLKR--DKIYTKSEKEARISELNGKLQ-------K 77
Cdd:PRK01156 195 SNLELENIKKQIADDEKShsiTLKEIERLSIEYNNAMDDYNNLKSALNElsSLEDMKNRYESEIKTAESDLSmeleknnY 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 78 AKEIEAKNKQPINDKIAVAEKYLKDHY----QTDYYNKVVESNKYEVQKAKADYdKKLKELEKEHKDILSGLSDKEEIKE 153
Cdd:PRK01156 275 YKELEERHMKIINDPVYKNRNYINDYFkyknDIENKKQILSNIDAEINKYHAII-KKLSVLQKDYNDYIKKKSRYDDLNN 353
|
.
gi 2125644400 154 E 154
Cdd:PRK01156 354 Q 354
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
22-154 |
2.61e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 22 EDYVGKIQAEIDELREEGT---NKVLEYSEEIEVLKRDKiytkSEKEARISELNGKLQKA-KEIEAKNKQpINDKIAVAE 97
Cdd:COG3883 15 DPQIQAKQKELSELQAELEaaqAELDALQAELEELNEEY----NELQAELEALQAEIDKLqAEIAEAEAE-IEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 98 KYLKDHYQT-----------------------DYYNKVVESNK---YEVQKAKADYDKKLKELEKEHKDILSGLSDKEEI 151
Cdd:COG3883 90 ERARALYRSggsvsyldvllgsesfsdfldrlSALSKIADADAdllEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
...
gi 2125644400 152 KEE 154
Cdd:COG3883 170 KAE 172
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
17-232 |
3.08e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 47.35 E-value: 3.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 17 LRKPIEDYVGKIQAEIDELrEEGTNKVL--EYSEEIEVlKRDKIYTKSEKEARI-SELNGKLQKAKEIE--------AKN 85
Cdd:TIGR01612 1137 IKKKSENYIDEIKAQINDL-EDVADKAIsnDDPEEIEK-KIENIVTKIDKKKNIyDEIKKLLNEIAEIEkdktsleeVKG 1214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 86 --------------------KQPINDKIAVAEKYLKDHYQTDYYNKVVESNKYEVQKAKA---------DYDKKLKELEK 136
Cdd:TIGR01612 1215 inlsygknlgklflekideeKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAemetfnishDDDKDHHIISK 1294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 137 EHKDILSGLSDKEEIKEENFIYKNRLFDAKLEYTKNMQEAKdrKHDAFTFEY-----HLIDLLKMSNFsfaEKQAQKIEN 211
Cdd:TIGR01612 1295 KHDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQ--KHNSDINLYlneiaNIYNILKLNKI---KKIIDEVKE 1369
|
250 260
....*....|....*....|....*.
gi 2125644400 212 Y-----KYSFNTRDFLLKNGLYIAII 232
Cdd:TIGR01612 1370 YtkeieENNKNIKDELDKSEKLIKKI 1395
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
16-150 |
5.70e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.66 E-value: 5.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 16 ALRKPIEDyVGKIQAEIDELREEgtnkVLEYSEEIEVLKRDKIYTKSE---KEARISELNGKLQKAKEIEAKNKQpindK 92
Cdd:COG4372 32 QLRKALFE-LDKLQEELEQLREE----LEQAREELEQLEEELEQARSEleqLEEELEELNEQLQAAQAELAQAQE----E 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2125644400 93 IAVAEKylkdhyQTDYYNKVVEsnkyEVQKAKADYDKKLKELEKEHKDILSGLSDKEE 150
Cdd:COG4372 103 LESLQE------EAEELQEELE----ELQKERQDLEQQRKQLEAQIAELQSEIAEREE 150
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1-175 |
6.69e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 6.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 1 MTNTVTNILShDEELAlrkpieDYVGKIQaEIDELREEGTNKVLEYSEEIEVLKRDKIYTK---SEKEArISELNGKLQK 77
Cdd:TIGR01612 872 LTNKIKAEIS-DDKLN------DYEKKFN-DSKSLINEINKSIEEEYQNINTLKKVDEYIKiceNTKES-IEKFHNKQNI 942
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 78 AKEIEAKNKQPINDKIAVaEKYLKDHYQTDYYNKVVESNKYEVQKAKADYDKKLKELEKEHKDILSGLSDkeeiKEENFI 157
Cdd:TIGR01612 943 LKEILNKNIDTIKESNLI-EKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKNNELIKYFNDLKANLGK----NKENML 1017
|
170
....*....|....*...
gi 2125644400 158 YKNrlFDAKLEYTKNMQE 175
Cdd:TIGR01612 1018 YHQ--FDEKEKATNDIEQ 1033
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
13-151 |
6.77e-05 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 44.90 E-value: 6.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 13 EELALRKPIEDYVGKIQ---AEIDELREEG---TNKVLEYSEEIEVL---------KRDKIYtkseKEARisELNGKLQK 77
Cdd:COG1340 147 KELEKAKKALEKNEKLKelrAELKELRKEAeeiHKKIKELAEEAQELheemielykEADELR----KEAD--ELHKEIVE 220
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2125644400 78 AKEiEAKnkqPINDKIAVAEKYLKDhyqtdyYNKvvESNKYEVQKAKADYDKKLKELEKEHKDILSGLSDKEEI 151
Cdd:COG1340 221 AQE-KAD---ELHEEIIELQKELRE------LRK--ELKKLRKKQRALKREKEKEELEEKAEEIFEKLKKGEKL 282
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
7-180 |
8.40e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 8.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 7 NILSHDE--ELALRK--PIEDY------VGKIQAEIDELREEgTNKVLEYSEEIEVLKRDKIYTKSEKEARISELNGKL- 75
Cdd:PRK03918 139 AILESDEsrEKVVRQilGLDDYenayknLGEVIKEIKRRIER-LEKFIKRTENIEELIKEKEKELEEVLREINEISSELp 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 76 QKAKEIEA--KNKQ---PINDKIAVAEKYLKDhyqtdyynkvVESNKYEVQKAKADYDKKLKELEKEHKDILSGLSDKEE 150
Cdd:PRK03918 218 ELREELEKleKEVKeleELKEEIEELEKELES----------LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE 287
|
170 180 190
....*....|....*....|....*....|
gi 2125644400 151 IKEENFIYKnRLFDAKLEYTKNMQEAKDRK 180
Cdd:PRK03918 288 LKEKAEEYI-KLSEFYEEYLDELREIEKRL 316
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
30-179 |
1.90e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 43.75 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 30 AEIDELREegtnKVLEYSEEIEVLK--RDKIYT-----KSEKEARISELNGKLQKAKEIEAKNKQPINDKIAVAEK---- 98
Cdd:COG1340 43 EKRDELNA----QVKELREEAQELRekRDELNEkvkelKEERDELNEKLNELREELDELRKELAELNKAGGSIDKLrkei 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 99 -YLKDHYQT-----DYYNKVVE-----SNKYEVQKAKADYDKKLKELEKEHKDILSGLSD-KEEIKEenfiyknrLFDAK 166
Cdd:COG1340 119 eRLEWRQQTevlspEEEKELVEkikelEKELEKAKKALEKNEKLKELRAELKELRKEAEEiHKKIKE--------LAEEA 190
|
170
....*....|...
gi 2125644400 167 LEYTKNMQEAKDR 179
Cdd:COG1340 191 QELHEEMIELYKE 203
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
27-211 |
2.03e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 2.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 27 KIQAEIDELREE----GTNKVLEYSEEIEVLKRDKIytksEKEARISELNGKLQKAKEIEaKNKQPINDKIAVAEKYLKD 102
Cdd:PRK03918 500 ELAEQLKELEEKlkkyNLEELEKKAEEYEKLKEKLI----KLKGEIKSLKKELEKLEELK-KKLAELEKKLDELEEELAE 574
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 103 hyqtdyYNKVVESNKYEVQKakaDYDKKLKELEKEHKDILSGLSDKEEIKEEnfiyKNRLFDAKLEYTKNMQEAKDRKHD 182
Cdd:PRK03918 575 ------LLKELEELGFESVE---ELEERLKELEPFYNEYLELKDAEKELERE----EKELKKLEEELDKAFEELAETEKR 641
|
170 180
....*....|....*....|....*....
gi 2125644400 183 AFTFEYHLIDLLKmsnfSFAEKQAQKIEN 211
Cdd:PRK03918 642 LEELRKELEELEK----KYSEEEYEELRE 666
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
27-154 |
3.24e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 3.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 27 KIQAEIDELREEGTNKVLEYSEEIEVLKRDKIYT--------KSEKEARISELNGKLQKAKEIEAKNKQPINDKIAVAEK 98
Cdd:PRK12704 28 IAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEakeeihklRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2125644400 99 ylKDHyQTDYYNKVVESNKYEVQKAKADYDKKLKELEKEHKDIlSGLSdKEEIKEE 154
Cdd:PRK12704 108 --REE-ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI-SGLT-AEEAKEI 158
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
10-153 |
3.82e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 10 SHDEELA-LRKPIEDY---VGKIQAEIDELREEgtnkVLEYSEEIEvlkrdkiytksEKEARISELNGKL---QKAKEIE 82
Cdd:COG1579 28 ELPAELAeLEDELAALearLEAAKTELEDLEKE----IKRLELEIE-----------EVEARIKKYEEQLgnvRNNKEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2125644400 83 AKNKQpI---NDKIAVAEKYLKDH-YQTDYYNKVVESNKYEVQKAKADYDKKLKELEKEHKDIlsglsdKEEIKE 153
Cdd:COG1579 93 ALQKE-IeslKRRISDLEDEILELmERIEELEEELAELEAELAELEAELEEKKAELDEELAEL------EAELEE 160
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
12-247 |
3.95e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 12 DEELALRKPIEdyvgKIQAEIDELREEgtNKVLEysEEIEVLKRDKiytkSEKEARISELNGKLQKAK-EIEAKNKQPIN 90
Cdd:COG4372 108 EEAEELQEELE----ELQKERQDLEQQ--RKQLE--AQIAELQSEI----AEREEELKELEEQLESLQeELAALEQELQA 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 91 DKIAVAEKYLKDHYQTDYYNKVVESNKYEVQK------------AKADYDKKLKELEKEHKDILSGLSDKEEIKEENFIY 158
Cdd:COG4372 176 LSEAEAEQALDELLKEANRNAEKEEELAEAEKlieslprelaeeLLEAKDSLEAKLGLALSALLDALELEEDKEELLEEV 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 159 KNRLFDAKLEYTKNMQEAKDRKHDAFTFEYH--------LIDLLKMSNFSFAEKQAQKIENYKYSFNTRDFLLKNGLYIA 230
Cdd:COG4372 256 ILKEIEELELAILVEKDTEEEELEIAALELEaleeaaleLKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAIL 335
|
250
....*....|....*..
gi 2125644400 231 IILVFIFLCIITPIKKN 247
Cdd:COG4372 336 LAELADLLQLLLVGLLD 352
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
12-214 |
8.70e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 8.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 12 DEELALRKPIEDYVGKIQAEIDEL-REEGTNKvleysEEIEVLKRDKIYTKSEKEARISELngklqkaKEIEAKnKQPIN 90
Cdd:TIGR02169 705 DELSQELSDASRKIGEIEKEIEQLeQEEEKLK-----ERLEELEEDLSSLEQEIENVKSEL-------KELEAR-IEELE 771
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 91 DKIAVAEKYLKDHYQTDYYNKVVESNkyevqkakadydKKLKELEKEHKDILSGLSDKEEIKEENFIYKNRLFDAKLEYT 170
Cdd:TIGR02169 772 EDLHKLEEALNDLEARLSHSRIPEIQ------------AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2125644400 171 KNMQEAKDRKhDAFTFEyhlIDLLKmsnfSFAEKQAQKIENYKY 214
Cdd:TIGR02169 840 EQRIDLKEQI-KSIEKE---IENLN----GKKEELEEELEELEA 875
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1-159 |
1.56e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.48 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 1 MTNTVTNILSHDEELALRKPIEDyVGKIQAEIDELREEGTNKVLEYSEEIEVLKRDKIYTKSEKEARISELNGKLQKAK- 79
Cdd:COG5185 356 LEAIKEEIENIVGEVELSKSSEE-LDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATs 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 80 --EIEAKNKQPINDKIAVAEKYLKDHYQTDYYNKVVESNKyEVQKAKADYDKKLKELEK---EHKDILSGLSDKEEIKEE 154
Cdd:COG5185 435 snEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINR-SVRSKKEDLNEELTQIESrvsTLKATLEKLRAKLERQLE 513
|
....*
gi 2125644400 155 NFIYK 159
Cdd:COG5185 514 GVRSK 518
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
31-178 |
2.08e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 31 EIDELREEgtNKVLEysEEIEVLKRDKiytkSEKEARISELNG-KLQKAKEIEAKNKQPINDKIAVAEKYLKDhyQTDYY 109
Cdd:TIGR04523 497 ELKKLNEE--KKELE--EKVKDLTKKI----SSLKEKIEKLESeKKEKESKISDLEDELNKDDFELKKENLEK--EIDEK 566
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2125644400 110 NKVVESNKYE---VQKAKADYDKKLKELEKEHKDILSGLSDKEEIKEEnfiYKNRLFDAKLEYTK------NMQEAKD 178
Cdd:TIGR04523 567 NKEIEELKQTqksLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISS---LEKELEKAKKENEKlssiikNIKSKKN 641
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
29-180 |
3.52e-03 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 39.90 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 29 QAEIDELREEgtnkvlEYSEEIEVLKRDKiytksEKEARISelngKLQKAKEIEAKNKQPINDKIAVAEKYLKDHYQtdY 108
Cdd:pfam13868 200 KAERDELRAK------LYQEEQERKERQK-----EREEAEK----KARQRQELQQAREEQIELKERRLAEEAEREEE--E 262
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2125644400 109 YNKVVESNKYEVQKAKADYDKKLKELEKEHKDILSGLSDKEEIK----EENFIYKNRLFDAKLEYTKNMQEAKDRK 180
Cdd:pfam13868 263 FERMLRKQAEDEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRaaerEEELEEGERLREEEAERRERIEEERQKK 338
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
12-137 |
3.69e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 12 DEELALRKPIEDyvgkIQAEIDELREEgtnkVLEYSEEIEVLKRD----------KIYTKSEKEARISELNgklQKAKEI 81
Cdd:TIGR02169 364 EELEDLRAELEE----VDKEFAETRDE----LKDYREKLEKLKREinelkreldrLQEELQRLSEELADLN---AAIAGI 432
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2125644400 82 EAKNKQPINDKIAVAEKYLKDHYQTDYYNKVVESNKYEVQKAKADYDK---KLKELEKE 137
Cdd:TIGR02169 433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRvekELSKLQRE 491
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
30-180 |
3.84e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 3.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 30 AEIDElrEEGTNKVLEYSEEIEVLKRDKIYTKSEKE---ARISELNGKLQKAKEIeAKNKQpINDKIAVAEKYLKDHyqt 106
Cdd:PRK03918 443 RELTE--EHRKELLEEYTAELKRIEKELKEIEEKERklrKELRELEKVLKKESEL-IKLKE-LAEQLKELEEKLKKY--- 515
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2125644400 107 dyynkvvesNKYEVQKAKADYDKKLKELEKEHKDILSGLSDKEEIKEenfiYKNRLfdAKLEytKNMQEAKDRK 180
Cdd:PRK03918 516 ---------NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKL--AELE--KKLDELEEEL 572
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
76-211 |
4.73e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 4.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 76 QKAKEIEAKNKQPINDKIAVAEKYLKDhyqtdyynKVVESnKYEVQKAKADYDKKLKELEKEHKDILSGLSDKEEI---- 151
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAEAIKKE--------ALLEA-KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENldrk 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2125644400 152 ------KEENFIYKNRLFDAKLEYTKNMQEAKDRKHdaftfEYHLIDLLKMSNFSFAEKQAQKIEN 211
Cdd:PRK12704 102 lellekREEELEKKEKELEQKQQELEKKEEELEELI-----EEQLQELERISGLTAEEAKEILLEK 162
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
14-180 |
4.82e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 38.35 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 14 ELALRKpIEDYVGKIQAE----IDELREEgtnkvleyseeIEVL-KRDKIYTK--SEKEARISELNGKLQKAKEieaknk 86
Cdd:pfam13851 7 EKAFNE-IKNYYNDITRNnlelIKSLKEE-----------IAELkKKEERNEKlmSEIQQENKRLTEPLQKAQE------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 87 qpindKIAVAEKYLKDHyqtdyynkvvESNKYEVQKAKADY---DKKLKELEKEHKDILSGLS----DKEEIKE--ENFI 157
Cdd:pfam13851 69 -----EVEELRKQLENY----------EKDKQSLKNLKARLkvlEKELKDLKWEHEVLEQRFEkverERDELYDkfEAAI 133
|
170 180 190
....*....|....*....|....*....|.
gi 2125644400 158 Y--------KNRLFDAKLEytkNMQEAKDRK 180
Cdd:pfam13851 134 QdvqqktglKNLLLEKKLQ---ALGETLEKK 161
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
13-180 |
5.71e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 39.56 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 13 EELALRKPIEDYVGKIQAEIDELREEgtnkvleyseeievlkrdKIYTKSEKEARISELNGKLqkAKEIEAknkqpINDK 92
Cdd:COG5185 243 SELEDLAQTSDKLEKLVEQNTDLRLE------------------KLGENAESSKRLNENANNL--IKQFEN-----TKEK 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125644400 93 IAVAEKYLKDHYQTDYYNKVVESNKY--EVQKAKADYDKKLK----ELEKEHKDILSGLSD-KEEIKEENFIYKNRLFDA 165
Cdd:COG5185 298 IAEYTKSIDIKKATESLEEQLAAAEAeqELEESKRETETGIQnltaEIEQGQESLTENLEAiKEEIENIVGEVELSKSSE 377
|
170
....*....|....*
gi 2125644400 166 KLEYTKNMQEAKDRK 180
Cdd:COG5185 378 ELDSFKDTIESTKES 392
|
|
| |
