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Conserved domains on  [gi|2125683341|ref|WP_227414903|]
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MULTISPECIES: EndoU domain-containing protein [Bacillus cereus group]

Protein Classification

EndoU domain-containing protein( domain architecture ID 10627756)

EndoU domain-containing protein may act as a nuclease toxin that cleaves RNAs in competitor cells

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EndoU_bacteria pfam14436
Bacterial EndoU nuclease; This is a bacterial virion of EndoU nuclease. It is found at ...
 103-218 2.91e-18

Bacterial EndoU nuclease; This is a bacterial virion of EndoU nuclease. It is found at C-terminal region of polymorphic toxin proteins.


:

Pssm-ID: 433952  Cd Length: 131  Bit Score: 77.56  E-value: 2.91e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125683341 103 EHLFHGELKqkwWGLKAVGYHHESM----MGGGEIVRITHAPNSAGVYRAKIKVDGETKNAL------SSFFPKDWDRVQ 172
Cdd:pfam14436   6 EHIFCGEIN---KGGKIGGGHFYGRylqlQNNGLANRLTEEVNPNGVYTAGVEIKDVGGTTVadkggeSTFFPDTWSAEE 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2125683341 173 VLDSIKEAYDNKIQVDTVR---YVGQTSHGFKVEMIIQNNEIITAYPVY 218
Cdd:pfam14436  83 ILDAITEAYKNKKNTPGPRnavVVGGSHDGVTIEVVFVPGGIITAYPDA 131
 
Name Accession Description Interval E-value
EndoU_bacteria pfam14436
Bacterial EndoU nuclease; This is a bacterial virion of EndoU nuclease. It is found at ...
 103-218 2.91e-18

Bacterial EndoU nuclease; This is a bacterial virion of EndoU nuclease. It is found at C-terminal region of polymorphic toxin proteins.


Pssm-ID: 433952  Cd Length: 131  Bit Score: 77.56  E-value: 2.91e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125683341 103 EHLFHGELKqkwWGLKAVGYHHESM----MGGGEIVRITHAPNSAGVYRAKIKVDGETKNAL------SSFFPKDWDRVQ 172
Cdd:pfam14436   6 EHIFCGEIN---KGGKIGGGHFYGRylqlQNNGLANRLTEEVNPNGVYTAGVEIKDVGGTTVadkggeSTFFPDTWSAEE 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2125683341 173 VLDSIKEAYDNKIQVDTVR---YVGQTSHGFKVEMIIQNNEIITAYPVY 218
Cdd:pfam14436  83 ILDAITEAYKNKKNTPGPRnavVVGGSHDGVTIEVVFVPGGIITAYPDA 131
 
Name Accession Description Interval E-value
EndoU_bacteria pfam14436
Bacterial EndoU nuclease; This is a bacterial virion of EndoU nuclease. It is found at ...
 103-218 2.91e-18

Bacterial EndoU nuclease; This is a bacterial virion of EndoU nuclease. It is found at C-terminal region of polymorphic toxin proteins.


Pssm-ID: 433952  Cd Length: 131  Bit Score: 77.56  E-value: 2.91e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125683341 103 EHLFHGELKqkwWGLKAVGYHHESM----MGGGEIVRITHAPNSAGVYRAKIKVDGETKNAL------SSFFPKDWDRVQ 172
Cdd:pfam14436   6 EHIFCGEIN---KGGKIGGGHFYGRylqlQNNGLANRLTEEVNPNGVYTAGVEIKDVGGTTVadkggeSTFFPDTWSAEE 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2125683341 173 VLDSIKEAYDNKIQVDTVR---YVGQTSHGFKVEMIIQNNEIITAYPVY 218
Cdd:pfam14436  83 ILDAITEAYKNKKNTPGPRnavVVGGSHDGVTIEVVFVPGGIITAYPDA 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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