NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2127474681|ref|WP_227651966|]
View 

hypothetical protein, partial [Klebsiella pneumoniae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TktA super family cl33744
Transketolase [Carbohydrate transport and metabolism]; Transketolase is part of the Pathway ...
 1-38 8.38e-15

Transketolase [Carbohydrate transport and metabolism]; Transketolase is part of the Pathway/BioSystem: Pentose phosphate pathway


The actual alignment was detected with superfamily member COG0021:

Pssm-ID: 439792 [Multi-domain]  Cd Length: 661  Bit Score: 65.03  E-value: 8.38e-15
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2127474681   1 KGKIVGMTGYGESAPAEQLFPFFGFTVDHIVATAEQVL 38
Cdd:COG0021   624 DGAVIGIDTFGASAPAKVLFEEFGFTVENVVAAAKELL 661
 
Name Accession Description Interval E-value
TktA COG0021
Transketolase [Carbohydrate transport and metabolism]; Transketolase is part of the Pathway ...
 1-38 8.38e-15

Transketolase [Carbohydrate transport and metabolism]; Transketolase is part of the Pathway/BioSystem: Pentose phosphate pathway


Pssm-ID: 439792 [Multi-domain]  Cd Length: 661  Bit Score: 65.03  E-value: 8.38e-15
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2127474681   1 KGKIVGMTGYGESAPAEQLFPFFGFTVDHIVATAEQVL 38
Cdd:COG0021   624 DGAVIGIDTFGASAPAKVLFEEFGFTVENVVAAAKELL 661
PRK05899 PRK05899
transketolase; Reviewed
 1-38 1.75e-13

transketolase; Reviewed


Pssm-ID: 235639 [Multi-domain]  Cd Length: 586  Bit Score: 61.30  E-value: 1.75e-13
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2127474681   1 KGKIVGMTGYGESAPAEQLFPFFGFTVDHIVATAEQVL 38
Cdd:PRK05899  549 DGKVLGIDTFGASAPADELFKEFGFTVENIVAAAKELL 586
Transketolase_C pfam02780
Transketolase, C-terminal domain; The C-terminal domain of transketolase has been proposed as ...
 1-30 2.86e-03

Transketolase, C-terminal domain; The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site.


Pssm-ID: 460693 [Multi-domain]  Cd Length: 124  Bit Score: 32.18  E-value: 2.86e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2127474681   1 KGKIVGMTG--YGESAPAEQLFPFFGFTVDHI 30
Cdd:pfam02780  93 DAPVLRVGGpdFPEPGSADELEKLYGLTPEKI 124
 
Name Accession Description Interval E-value
TktA COG0021
Transketolase [Carbohydrate transport and metabolism]; Transketolase is part of the Pathway ...
 1-38 8.38e-15

Transketolase [Carbohydrate transport and metabolism]; Transketolase is part of the Pathway/BioSystem: Pentose phosphate pathway


Pssm-ID: 439792 [Multi-domain]  Cd Length: 661  Bit Score: 65.03  E-value: 8.38e-15
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2127474681   1 KGKIVGMTGYGESAPAEQLFPFFGFTVDHIVATAEQVL 38
Cdd:COG0021   624 DGAVIGIDTFGASAPAKVLFEEFGFTVENVVAAAKELL 661
PRK05899 PRK05899
transketolase; Reviewed
 1-38 1.75e-13

transketolase; Reviewed


Pssm-ID: 235639 [Multi-domain]  Cd Length: 586  Bit Score: 61.30  E-value: 1.75e-13
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2127474681   1 KGKIVGMTGYGESAPAEQLFPFFGFTVDHIVATAEQVL 38
Cdd:PRK05899  549 DGKVLGIDTFGASAPADELFKEFGFTVENIVAAAKELL 586
PLN02790 PLN02790
transketolase
 1-38 5.08e-08

transketolase


Pssm-ID: 215424 [Multi-domain]  Cd Length: 654  Bit Score: 45.78  E-value: 5.08e-08
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2127474681   1 KGKIVGMTGYGESAPAEQLFPFFGFTVDHIVATAEQVL 38
Cdd:PLN02790  617 KGKVIGVDRFGASAPAGILYKEFGFTVENVVAAAKSLL 654
PTZ00089 PTZ00089
transketolase; Provisional
 5-38 2.67e-07

transketolase; Provisional


Pssm-ID: 173383 [Multi-domain]  Cd Length: 661  Bit Score: 43.90  E-value: 2.67e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2127474681   5 VGMTGYGESAPAEQLFPFFGFTVDHIVATAEQVL 38
Cdd:PTZ00089  625 VGISGFGASAPANALYKHFGFTVENVVEKARALA 658
Transketolase_C pfam02780
Transketolase, C-terminal domain; The C-terminal domain of transketolase has been proposed as ...
 1-30 2.86e-03

Transketolase, C-terminal domain; The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site.


Pssm-ID: 460693 [Multi-domain]  Cd Length: 124  Bit Score: 32.18  E-value: 2.86e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2127474681   1 KGKIVGMTG--YGESAPAEQLFPFFGFTVDHI 30
Cdd:pfam02780  93 DAPVLRVGGpdFPEPGSADELEKLYGLTPEKI 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH