|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
163-497 |
2.01e-167 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 480.42 E-value: 2.01e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 163 EHVRKVALEDENHRLHSALQSRFKPSSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPF 242
Cdd:COG3829 113 TELKRLERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPF 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 243 VKFNCAALPESVIESELFGHEYGAFTGAATPRR-GRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQ 321
Cdd:COG3829 193 VAVNCAAIPENLLESELFGYEKGAFTGAKKGGKpGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIP 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 322 VDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKRISTPAMGMLMCY 401
Cdd:COG3829 273 VDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAY 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 402 HWPGNVRELENVIERAVLLCEGAVIEPHHLPPSLQTPAVSESPSAGGILDVRLGQAECELIAEALKRHKGNMTESAAHLG 481
Cdd:COG3829 353 DWPGNVRELENVIERAVVLSEGDVITPEHLPEYLLEEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALG 432
|
330
....*....|....*.
gi 2165432628 482 LTRRVLGLRMARHNLN 497
Cdd:COG3829 433 ISRSTLYRKLKKYGIK 448
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
23-501 |
8.58e-145 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 426.05 E-value: 8.58e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 23 ELGRIPSEGSDLAGILRVLLELMQRHLKMARGMVTLRDPESGRIFVQqGCGLSEEEEASGYLALGEDIVAQAVDSGRTVV 102
Cdd:TIGR01817 9 EISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVA-AIGWSEEGFAPIRYRVGEGAIGQIVATGNSLV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 103 LP--------------GEAGNQSLLCVPIRRDRKVLGTIVAERHYANRRMLELDAEILAILAALTAQAVELHLQEHVRKV 168
Cdd:TIGR01817 88 VPdvaaeplfldrlslYDPGPVPFIGVPIKADSETIGVLAADRDFRSRERLEEEVRFLEMVANLIGQTVRLHRLVAQRRE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 169 ALEDENHRLHSALQSRFKPSS---------IIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAE 239
Cdd:TIGR01817 168 RLIAEAVQLSKQLRDKAPEIArrrsgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAK 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 240 GPFVKFNCAALPESVIESELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVT 319
Cdd:TIGR01817 248 RPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRT 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 320 HQVDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAkRISTPAMGMLM 399
Cdd:TIGR01817 328 LKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPL-TITPSAIRVLM 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 400 CYHWPGNVRELENVIERAVLLCEGAVIEPHH--------LPPSL--------------------QTPAVSESPSAGGILD 451
Cdd:TIGR01817 407 SCKWPGNVRELENCLERTATLSRSGTITRSDfscqsgqcLSPMLaktcphghisidplagttppHSPASAALPGEPGLSG 486
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 2165432628 452 VRLgqAECELIAEALKRHKGNMTESAAHLGLTRRVLGLRMARHNLNHKEF 501
Cdd:TIGR01817 487 PTL--SERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRKLNIEMKKL 534
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
140-493 |
3.89e-126 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 377.21 E-value: 3.89e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 140 ELDAEILAILAALTAQAVELHLQ-EHVRKVALEdeNHRLHSAL-QSRFKPSSIIGSSRPLQEVHRLIEKVARSRATVLIL 217
Cdd:PRK05022 139 AFSDEELRALAALAAATLRNALLiEQLESQAEL--PQDVAEFLrQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLIL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 218 GESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPA 297
Cdd:PRK05022 217 GETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLA 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 298 MQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVA 377
Cdd:PRK05022 297 LQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLE 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 378 RLSSRMGIPAKRISTPAMGMLMCYHWPGNVRELENVIERAVLLCEGA------VIEPHH--LPPSLQTPAVSESPSAGGI 449
Cdd:PRK05022 377 QNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARARgagrivTLEAQHldLPAEVALPPPEAAAAPAAV 456
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2165432628 450 LDVRLGQA----ECELIAEALKRHKGNMTESAAHLGLTRRVLGlRMAR 493
Cdd:PRK05022 457 VSQNLREAteafQRQLIRQALAQHQGNWAAAARALELDRANLH-RLAK 503
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
180-485 |
3.18e-103 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 319.13 E-value: 3.18e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 180 ALQSRFKP----------SSIIGSSRPLQEVHRLIEKVA-RSRATVLILGESGVGKELVASAIH---YNGSNAEGPFVKF 245
Cdd:NF038308 161 ALAQRFAReqaeavsflkSGIATRNAAFNRLIEQIERVAlRSRAPILLTGPTGAGKSFLARRIYelkKRRHQVSGPFVEV 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 246 NCAALPESVIESELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLR 325
Cdd:NF038308 241 NCATLRGDLAMSELFGHVKGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQ 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 326 ILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPA-----KRISTPAMGMLMC 400
Cdd:NF038308 321 LIAGTNRDLRQEVAEGRFREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVrfnkeARFRYLAFATSPE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 401 YHWPGNVRELENVIERAVLLCEGAVIEPHHLPPSLQTPAVSESPSAGGILDVRLG---------------QAECELIAEA 465
Cdd:NF038308 401 ALWPGNFRELSASVTRMATLADGGRITEELVEEEIARLRAAWQSAPAAADDDALAdllggeqlaeldlfdRVQLAAVLRV 480
|
330 340
....*....|....*....|
gi 2165432628 466 LKRHKGNMTESAAHLGLTRR 485
Cdd:NF038308 481 CRQSRSLSAAGRRLFGVSRQ 500
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
190-356 |
1.02e-102 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 304.71 E-value: 1.02e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 190 IIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAFTG 269
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 270 AATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDLYY 349
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 2165432628 350 RLNVFPI 356
Cdd:pfam00158 161 RLNVIPI 167
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
198-352 |
2.87e-21 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 90.28 E-value: 2.87e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 198 QEVHRLIEKVA--RSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAFtgaatpRR 275
Cdd:cd00009 4 EEAIEALREALelPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL------LF 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2165432628 276 GRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGnvthqVDLRILAATSRDLRamveqSRFRGDLYYRLN 352
Cdd:cd00009 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDR-----ENVRVIGATNRPLL-----GDLDRALYDRLD 144
|
|
| GAF |
smart00065 |
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ... |
33-163 |
5.16e-15 |
|
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Pssm-ID: 214500 [Multi-domain] Cd Length: 149 Bit Score: 72.41 E-value: 5.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 33 DLAGILRVLLELMQRHLKMARGMVTLRDP-ESGRIFVQQGCGLSEEEEASGYlALGEDIVAQAVDSGRTVVLP------- 104
Cdd:smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEnDRGELVLVAADGLTLPTLGIRF-PLDEGLAGRVAETGRPLNIPdveadpl 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2165432628 105 -------GEAGNQSLLCVPIRRDRKVLGTIVAERHYANRRMLELDAEILAILAALTAQAVELHLQE 163
Cdd:smart00065 80 faedllgRYQGVRSFLAVPLVADGELVGVLALHNKKSPRPFTEEDEELLQALANQLAIALANAQLY 145
|
|
| PtsP |
COG3605 |
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]; |
16-166 |
4.57e-14 |
|
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms];
Pssm-ID: 442824 [Multi-domain] Cd Length: 188 Bit Score: 70.70 E-value: 4.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 16 DLLPLLGELGRIPSEGSDLAGILRVLLELMQRHLKMARGMVTLRDPESGRIFVQQGCGLSEEEEASGYLALGEDIVAQAV 95
Cdd:COG3605 1 EMLKALRRISEAVASALDLDEALDRIVRRIAEALGVDVCSIYLLDPDGGRLELRATEGLNPEAVGKVRLPLGEGLVGLVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 96 DSGRTVVLP--------------GEAGNQSLLCVPIRRDRKVLGTIVAERHYAnRRMLELDAEILAILAALTAQAVELH- 160
Cdd:COG3605 81 ERGEPLNLAdaashprfkyfpetGEEGFRSFLGVPIIRRGRVLGVLVVQSREP-REFTEEEVEFLVTLAAQLAEAIANAe 159
|
....*.
gi 2165432628 161 LQEHVR 166
Cdd:COG3605 160 LLGELR 165
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
213-351 |
1.62e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.61 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 213 TVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIES---ELFGHEYGAFTGAATPR--RGRFEAADGGTIF 287
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLRlaLALARKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2165432628 288 LDEVGELSPAMQAKLLRVLQEksfERVGGNVTHQVDLRILAATSR--DLRAMVEQSRFRGDLYYRL 351
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| GAF |
pfam01590 |
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl ... |
33-157 |
3.85e-08 |
|
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54. This domain can bind biliverdine and phycocyanobilin (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 460259 [Multi-domain] Cd Length: 133 Bit Score: 52.10 E-value: 3.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 33 DLAGILRVLLELMQRHLKMARGMVTLRDpESGRIFVQQGcglsEEEEASGYLALGEDIVAQAVDSGRTVVLP-------- 104
Cdd:pfam01590 1 DLEEILQTILEELRELLGADRCALYLPD-ADGLEYLPPG----ARWLKAAGLEIPPGTGVTVLRTGRPLVVPdaagdprf 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 105 -------GEAGNQSLLCVPIRRDRKVLGTIVAerHYANRRMLELDAEILAILAALTAQAV 157
Cdd:pfam01590 76 ldpllllRNFGIRSLLAVPIIDDGELLGVLVL--HHPRPPFTEEELELLEVLADQVAIAL 133
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
163-497 |
2.01e-167 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 480.42 E-value: 2.01e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 163 EHVRKVALEDENHRLHSALQSRFKPSSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPF 242
Cdd:COG3829 113 TELKRLERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPF 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 243 VKFNCAALPESVIESELFGHEYGAFTGAATPRR-GRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQ 321
Cdd:COG3829 193 VAVNCAAIPENLLESELFGYEKGAFTGAKKGGKpGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIP 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 322 VDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKRISTPAMGMLMCY 401
Cdd:COG3829 273 VDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAY 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 402 HWPGNVRELENVIERAVLLCEGAVIEPHHLPPSLQTPAVSESPSAGGILDVRLGQAECELIAEALKRHKGNMTESAAHLG 481
Cdd:COG3829 353 DWPGNVRELENVIERAVVLSEGDVITPEHLPEYLLEEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALG 432
|
330
....*....|....*.
gi 2165432628 482 LTRRVLGLRMARHNLN 497
Cdd:COG3829 433 ISRSTLYRKLKKYGIK 448
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
23-501 |
8.58e-145 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 426.05 E-value: 8.58e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 23 ELGRIPSEGSDLAGILRVLLELMQRHLKMARGMVTLRDPESGRIFVQqGCGLSEEEEASGYLALGEDIVAQAVDSGRTVV 102
Cdd:TIGR01817 9 EISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVA-AIGWSEEGFAPIRYRVGEGAIGQIVATGNSLV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 103 LP--------------GEAGNQSLLCVPIRRDRKVLGTIVAERHYANRRMLELDAEILAILAALTAQAVELHLQEHVRKV 168
Cdd:TIGR01817 88 VPdvaaeplfldrlslYDPGPVPFIGVPIKADSETIGVLAADRDFRSRERLEEEVRFLEMVANLIGQTVRLHRLVAQRRE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 169 ALEDENHRLHSALQSRFKPSS---------IIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAE 239
Cdd:TIGR01817 168 RLIAEAVQLSKQLRDKAPEIArrrsgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAK 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 240 GPFVKFNCAALPESVIESELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVT 319
Cdd:TIGR01817 248 RPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRT 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 320 HQVDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAkRISTPAMGMLM 399
Cdd:TIGR01817 328 LKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPL-TITPSAIRVLM 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 400 CYHWPGNVRELENVIERAVLLCEGAVIEPHH--------LPPSL--------------------QTPAVSESPSAGGILD 451
Cdd:TIGR01817 407 SCKWPGNVRELENCLERTATLSRSGTITRSDfscqsgqcLSPMLaktcphghisidplagttppHSPASAALPGEPGLSG 486
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 2165432628 452 VRLgqAECELIAEALKRHKGNMTESAAHLGLTRRVLGLRMARHNLNHKEF 501
Cdd:TIGR01817 487 PTL--SERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRKLNIEMKKL 534
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
160-495 |
6.95e-142 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 414.36 E-value: 6.95e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 160 HLQEHVRKvALEDENHRlhsalQSRFKPSSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAE 239
Cdd:COG2204 109 ELLAAVER-ALERRRLR-----RENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRAD 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 240 GPFVKFNCAALPESVIESELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVT 319
Cdd:COG2204 183 GPFVAVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKP 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 320 HQVDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKrISTPAMGMLM 399
Cdd:COG2204 263 IPVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK-LSPEALEALL 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 400 CYHWPGNVRELENVIERAVLLCEGAVIEPHHLPPSLQtpavsespsaggildvrlgQAECELIAEALKRHKGNMTESAAH 479
Cdd:COG2204 342 AYDWPGNVRELENVIERAVILADGEVITAEDLPEALE-------------------EVERELIERALEETGGNVSRAAEL 402
|
330
....*....|....*.
gi 2165432628 480 LGLTRRVLGLRMARHN 495
Cdd:COG2204 403 LGISRRTLYRKLKKYG 418
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
140-493 |
3.89e-126 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 377.21 E-value: 3.89e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 140 ELDAEILAILAALTAQAVELHLQ-EHVRKVALEdeNHRLHSAL-QSRFKPSSIIGSSRPLQEVHRLIEKVARSRATVLIL 217
Cdd:PRK05022 139 AFSDEELRALAALAAATLRNALLiEQLESQAEL--PQDVAEFLrQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLIL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 218 GESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPA 297
Cdd:PRK05022 217 GETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLA 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 298 MQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVA 377
Cdd:PRK05022 297 LQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLE 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 378 RLSSRMGIPAKRISTPAMGMLMCYHWPGNVRELENVIERAVLLCEGA------VIEPHH--LPPSLQTPAVSESPSAGGI 449
Cdd:PRK05022 377 QNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARARgagrivTLEAQHldLPAEVALPPPEAAAAPAAV 456
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2165432628 450 LDVRLGQA----ECELIAEALKRHKGNMTESAAHLGLTRRVLGlRMAR 493
Cdd:PRK05022 457 VSQNLREAteafQRQLIRQALAQHQGNWAAAARALELDRANLH-RLAK 503
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
169-487 |
4.26e-124 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 370.33 E-value: 4.26e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 169 ALEDENHRLHSALQSRFKPSSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCA 248
Cdd:PRK11361 124 SMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCA 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 249 ALPESVIESELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILA 328
Cdd:PRK11361 204 ALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIA 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 329 ATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKRISTPAMGMLMCYHWPGNVR 408
Cdd:PRK11361 284 ATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIR 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 409 ELENVIERAVLLCEGAVIEPHHLPPSLQTPA-----VSESPSAGGILDVRLGQAECELIAEALKRHKGNMTESAAHLGLT 483
Cdd:PRK11361 364 ELSNVIERAVVMNSGPIIFSEDLPPQIRQPVcnageVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGIS 443
|
....
gi 2165432628 484 RRVL 487
Cdd:PRK11361 444 RRAL 447
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
150-495 |
4.70e-123 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 373.08 E-value: 4.70e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 150 AALTAQAVELHLQEHVRKVALEDENHRLHSALQSRFKPSS----IIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKE 225
Cdd:COG3284 279 APASPRPLRLRDGRRLGALLRLRPARRAARAAPAGAPAPAalaaLAGGDPAMRRALRRARRLADRDIPVLILGETGTGKE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 226 LVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAFTGAAT-PRRGRFEAADGGTIFLDEVGELSPAMQAKLLR 304
Cdd:COG3284 359 LFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRkGRPGKIEQADGGTLFLDEIGDMPLALQARLLR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 305 VLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERdSDIAILAEHFVARLSSRMG 384
Cdd:COG3284 439 VLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLRELAAGRG 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 385 IPakRISTPAMGMLMCYHWPGNVRELENVIERAVLLCEGAVIEPHHLPPSLQTPAVSESPSAGGILdVRLGQAECELIAE 464
Cdd:COG3284 518 PL--RLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVEDLPDELRAELAAAAPAAAAPL-TSLEEAERDAILR 594
|
330 340 350
....*....|....*....|....*....|.
gi 2165432628 465 ALKRHKGNMTESAAHLGLTRRVLGLRMARHN 495
Cdd:COG3284 595 ALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
187-487 |
2.10e-103 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 317.45 E-value: 2.10e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 187 PSSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGA 266
Cdd:TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGA 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 267 FTGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGD 346
Cdd:TIGR01818 213 FTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFRED 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 347 LYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKRISTPAMGMLMCYHWPGNVRELENVIERAVLLCEGAVI 426
Cdd:TIGR01818 293 LFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEV 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 427 EPHHLPPSL---QTPAVSESPSAG--------------------GILDVRLGQAECELIAEALKRHKGNMTESAAHLGLT 483
Cdd:TIGR01818 373 LVSDLPAELaltGRPASAPDSDGQdswdealeawakqalsrgeqGLLDRALPEFERPLLEAALQHTRGHKQEAAALLGWG 452
|
....
gi 2165432628 484 RRVL 487
Cdd:TIGR01818 453 RNTL 456
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
164-493 |
2.95e-103 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 316.20 E-value: 2.95e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 164 HVRKVALEdenhrLHSALQSRFkpsSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFV 243
Cdd:PRK10365 123 HTHSIDAE-----TPAVTASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLV 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 244 KFNCAALPESVIESELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVD 323
Cdd:PRK10365 195 TLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVD 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 324 LRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKRISTPAMGMLMCYHW 403
Cdd:PRK10365 275 VRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 404 PGNVRELENVIERAVLLCEGAVIEPHHLPPSLQTPAVSESPSAggilDVR-LGQAECELIAEALKRHKGNMTESAAHLGL 482
Cdd:PRK10365 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ----DIQpLVEVEKEVILAALEKTGGNKTEAARQLGI 430
|
330
....*....|.
gi 2165432628 483 TRRVLGLRMAR 493
Cdd:PRK10365 431 TRKTLLAKLSR 441
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
188-445 |
3.01e-103 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 318.67 E-value: 3.01e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 188 SSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAF 267
Cdd:COG3283 204 DHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAF 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 268 TGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDL 347
Cdd:COG3283 284 GNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 348 YYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKRISTPAMGMLMCYHWPGNVRELENVIERAVLLCEGAVIE 427
Cdd:COG3283 364 YYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDELT 443
|
250
....*....|....*...
gi 2165432628 428 PHHlppsLQTPAVSESPS 445
Cdd:COG3283 444 PED----LQLPEYAASAG 457
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
180-485 |
3.18e-103 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 319.13 E-value: 3.18e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 180 ALQSRFKP----------SSIIGSSRPLQEVHRLIEKVA-RSRATVLILGESGVGKELVASAIH---YNGSNAEGPFVKF 245
Cdd:NF038308 161 ALAQRFAReqaeavsflkSGIATRNAAFNRLIEQIERVAlRSRAPILLTGPTGAGKSFLARRIYelkKRRHQVSGPFVEV 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 246 NCAALPESVIESELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLR 325
Cdd:NF038308 241 NCATLRGDLAMSELFGHVKGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQ 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 326 ILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPA-----KRISTPAMGMLMC 400
Cdd:NF038308 321 LIAGTNRDLRQEVAEGRFREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVrfnkeARFRYLAFATSPE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 401 YHWPGNVRELENVIERAVLLCEGAVIEPHHLPPSLQTPAVSESPSAGGILDVRLG---------------QAECELIAEA 465
Cdd:NF038308 401 ALWPGNFRELSASVTRMATLADGGRITEELVEEEIARLRAAWQSAPAAADDDALAdllggeqlaeldlfdRVQLAAVLRV 480
|
330 340
....*....|....*....|
gi 2165432628 466 LKRHKGNMTESAAHLGLTRR 485
Cdd:NF038308 481 CRQSRSLSAAGRRLFGVSRQ 500
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
190-356 |
1.02e-102 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 304.71 E-value: 1.02e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 190 IIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAFTG 269
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 270 AATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDLYY 349
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 2165432628 350 RLNVFPI 356
Cdd:pfam00158 161 RLNVIPI 167
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
141-496 |
2.15e-102 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 314.38 E-value: 2.15e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 141 LDAEILAILAALTaqaveLHLQEhvrkvaLEDENHRLHSALQSRFKPSsIIGSSRPLQEVHRLIEKVARSRATVLILGES 220
Cdd:TIGR02915 104 IDPDVLKLIVDRA-----FHLYT------LETENRRLQSALGGTALRG-LITSSPGMQKICRTIEKIAPSDITVLLLGES 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 221 GVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPAMQA 300
Cdd:TIGR02915 172 GTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQA 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 301 KLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLS 380
Cdd:TIGR02915 252 KLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFA 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 381 SRMGIPAKRISTPAMGMLMCYHWPGNVRELENVIERAVLLCEGAVIEPHHLppSLQTPAVSESPSAGGILDVRlGQAECE 460
Cdd:TIGR02915 332 RELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQITAEDL--GLDARERAETPLEVNLREVR-ERAERE 408
|
330 340 350
....*....|....*....|....*....|....*.
gi 2165432628 461 LIAEALKRHKGNMTESAAHLGLTRRVLGLRMARHNL 496
Cdd:TIGR02915 409 AVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
110-493 |
2.76e-97 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 308.30 E-value: 2.76e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 110 QSLLCVPIRRDRKVLGTI----VAERHY--ANRRMLELDAEILAIlaaltaqAVE--LHLQE-HVRKVALEDENHRLHSA 180
Cdd:PRK15429 295 QTLCLLPLMSGDTMLGVLklaqCEEKVFttTNLKLLRQIAERVAI-------AVDnaLAYQEiHRLKERLVDENLALTEQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 181 L---QSRFkpSSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHyNGSNAEGP-FVKFNCAALPESVIE 256
Cdd:PRK15429 368 LnnvDSEF--GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIH-NLSGRNNRrMVKMNCAAMPAGLLE 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 257 SELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRA 336
Cdd:PRK15429 445 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKK 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 337 MVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMG-----IPAKRISTpamgmLMCYHWPGNVRELE 411
Cdd:PRK15429 525 MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGrnidsIPAETLRT-----LSNMEWPGNVRELE 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 412 NVIERAVLLCEGAVIE---PHHLPPSLQTPAVSESpsaggilDVRLGQAECELIAEALKRHKGNMT---ESAAHLGLTRR 485
Cdd:PRK15429 600 NVIERAVLLTRGNVLQlslPDITLPEPETPPAATV-------VAQEGEDEYQLIVRVLKETNGVVAgpkGAAQRLGLKRT 672
|
....*...
gi 2165432628 486 VLGLRMAR 493
Cdd:PRK15429 673 TLLSRMKR 680
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
190-483 |
5.79e-96 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 293.43 E-value: 5.79e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 190 IIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAFTG 269
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 270 AATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDLYY 349
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 350 RLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPA-KRISTPAMGMLMCYHWPGNVRELENVIERAVLLC--EGAVI 426
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLfPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHglEEAPI 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2165432628 427 E-----------------PHHLPPSLQTPAVSESPSAGGILDVRLGQA----ECELIAEALKRHKGNMTESAAHLGLT 483
Cdd:TIGR02974 241 DeiiidpfaspwrpkqaaPAVDEVNSTPTDLPSPSSIAAAFPLDLKQAqqdyEIELLQQALAEAQFNQRKAAELLGLT 318
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
35-497 |
1.42e-95 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 292.91 E-value: 1.42e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 35 AGILRVLLELMQRHLKMARGMVTLRDPESGRIFVQQGCGLSEEEEASGYLALGEDIVAQAVDSGRTVVLPGEAgnQSLLC 114
Cdd:COG3604 1 ALLALRLLGLPLLLLLALALLLLVLLLLALLLRGDLLASALVLEESLELLALALSEALLAAQARQAALAARER--QLFLG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 115 VPIRRDRKVLGTIVAERHYANRRmLELDAEILAILAALTAQAvelhlqehvrkvaledenhrlhsalqsrfkpssiigss 194
Cdd:COG3604 79 VPLRVGGEVLGVLTLDSRRPGAF-SEEDLRLLETLASLAAVA-------------------------------------- 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 195 rplqevhrliekvarsratvlILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESelfgheygaftgaatpr 274
Cdd:COG3604 120 ---------------------ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES----------------- 161
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 275 rgrfeaadggtifldevgelspamqakllrvLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDLYYRLNVF 354
Cdd:COG3604 162 -------------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVF 210
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 355 PISVPPLRERDSDIAILAEHFVARLSSRMGIPAKRISTPAMGMLMCYHWPGNVRELENVIERAVLLCEGAVIEPHHLPPS 434
Cdd:COG3604 211 PIRLPPLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAPG 290
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2165432628 435 LQTPavsespsaggildvrLGQAECELIAEALKRHKGNMTESAAHLGLTRRVLGLRMARHNLN 497
Cdd:COG3604 291 SREA---------------LEEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
179-496 |
1.33e-88 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 281.61 E-value: 1.33e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 179 SALQSRFKPSSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIH--------YNGSNAEGPFVKFNCAAL 250
Cdd:PRK15424 210 NALRTRYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAI 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 251 PESVIESELFGHEYGAFTGAatpRRG----RFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRI 326
Cdd:PRK15424 290 AESLLEAELFGYEEGAFTGS---RRGgragLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRV 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 327 LAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHF----VARLSSRMGIPAKRISTPAMGMLMCYH 402
Cdd:PRK15424 367 ISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFlkqsLAALSAPFSAALRQGLQQCETLLLHYD 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 403 WPGNVRELENVIERavlLCEGAVIEPHH---------LPPSLQTPAVSESPSAggildvrlgqAECELIAEALKRHKGNM 473
Cdd:PRK15424 447 WPGNVRELRNLMER---LALFLSVEPTPdltpqflqlLLPELARESAKTPAPR----------LLAATLQQALERFNGDK 513
|
330 340
....*....|....*....|...
gi 2165432628 474 TESAAHLGLTRRVLGLRMARHNL 496
Cdd:PRK15424 514 TAAANYLGISRTTLWRRLKAEAK 536
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
179-491 |
6.26e-88 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 279.44 E-value: 6.26e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 179 SALQSRFKPSSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESE 258
Cdd:TIGR02329 203 NQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 259 LFGHEYGAFTGAATP-RRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAM 337
Cdd:TIGR02329 283 LFGYEEGAFTGARRGgRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTA 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 338 VEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIP----AKRISTPAMGMLMCYHWPGNVRELENV 413
Cdd:TIGR02329 363 VQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPdseaAAQVLAGVADPLQRYPWPGNVRELRNL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 414 IERavLLCEGAVIEPHHLPPSLQ---TPAVSESPSAGGILDVRLGQA---ECELIAEALKRHKGNMTESAAHLGLTRRVL 487
Cdd:TIGR02329 443 VER--LALELSAMPAGALTPDVLralAPELAEASGKGKTSALSLRERsrvEALAVRAALERFGGDRDAAAKALGISRTTL 520
|
....
gi 2165432628 488 GLRM 491
Cdd:TIGR02329 521 WRRL 524
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
188-500 |
5.48e-83 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 264.81 E-value: 5.48e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 188 SSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAF 267
Cdd:PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 268 TGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDL 347
Cdd:PRK10923 218 TGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 348 YYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKRISTPAMGMLMCYHWPGNVRELENVIERAVLLCEGAVIE 427
Cdd:PRK10923 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVL 377
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2165432628 428 PHHLPPSLQTPAVSESPSAggILDVRLGQAECELIAEALKRHKGNMTESAahLGLTRRVLGLRMARHNLNHKE 500
Cdd:PRK10923 378 IQDLPGELFESTVPESTSQ--MQPDSWATLLAQWADRALRSGHQNLLSEA--QPELERTLLTTALRHTQGHKQ 446
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
189-497 |
3.59e-82 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 258.06 E-value: 3.59e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 189 SIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAFT 268
Cdd:PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 269 GAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDLY 348
Cdd:PRK11608 87 GAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 349 YRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKRISTP-AMGMLMCYHWPGNVRELENVIERAV-------LL 420
Cdd:PRK11608 167 DRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTErARETLLNYRWPGNIRELKNVVERSVyrhgtseYP 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 421 CEGAVIEPHHLPPSLQTPAVSESPSAGGI-LDVR--LGQAECELIAEALKRHKGNMTESAAHLGLTRRVLGLRMARHNLN 497
Cdd:PRK11608 247 LDNIIIDPFKRRPAEEAIAVSETTSLPTLpLDLRewQHQQEKELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKKHQIL 326
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
202-502 |
1.35e-78 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 252.45 E-value: 1.35e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 202 RLIEK---VARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAFTGAATPRRGRF 278
Cdd:PRK15115 145 RLLEQarmVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLF 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 279 EAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISV 358
Cdd:PRK15115 225 QAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 359 PPLRERDSDIAILAEHFVARLSSRMGIPAKRISTPAMGMLMCYHWPGNVRELENVIERAVLLCEGAVIephhlPPSLQTP 438
Cdd:PRK15115 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVI-----SDALVEQ 379
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2165432628 439 AVSESPSAGGILDVRLGQAECELIAEALKRHKGNMTESAAHLGLTRRVLGLRMARHNLNHKEFR 502
Cdd:PRK15115 380 ALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
188-429 |
7.73e-77 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 250.37 E-value: 7.73e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 188 SSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAF 267
Cdd:PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAY 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 268 TGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDL 347
Cdd:PRK10820 284 PNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 348 YYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKRISTPAMGMLMCYHWPGNVRELENVIERAVLLCEGAVIE 427
Cdd:PRK10820 364 YYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELR 443
|
..
gi 2165432628 428 PH 429
Cdd:PRK10820 444 PQ 445
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
159-501 |
2.85e-67 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 228.02 E-value: 2.85e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 159 LHLQEHVRKVAledeNHRLHSAlqsRFKPSSIIGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHyNGSN- 237
Cdd:PRK11388 303 LHPVEQMRQLM----TSQLGKV---SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIH-NESEr 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 238 AEGPFVKFNCAALPESVIESELFGheyGAFTGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGN 317
Cdd:PRK11388 375 AAGPYIAVNCQLYPDEALAEEFLG---SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSR 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 318 VTHQVDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKrISTPAMGM 397
Cdd:PRK11388 452 RLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK-IDDDALAR 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 398 LMCYHWPGNVRELENVIERAVLLCEGAVIEPHHLPPSLQTPAVS-ESPSAGGILDVRLGQAECELIAEALKRHKGNMTES 476
Cdd:PRK11388 531 LVSYRWPGNDFELRSVIENLALSSDNGRIRLSDLPEHLFTEQATdDVSATRLSTSLSLAELEKEAIINAAQVCGGRIQEM 610
|
330 340
....*....|....*....|....*
gi 2165432628 477 AAHLGLTRRVLGLRMARHNLNHKEF 501
Cdd:PRK11388 611 AALLGIGRTTLWRKMKQHGIDAGQF 635
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
204-426 |
8.98e-42 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 156.53 E-value: 8.98e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 204 IEKVA-RSRATVLILGESGVGKELVASAIhYNGSNA----EGPFVKFNCAALPESVIESELFGHEYGAFTGAATPRRGRF 278
Cdd:COG4650 200 IERVAiRSRAPILLTGPTGAGKSQLARRI-YELKKArhqvSGRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRAGLL 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 279 EAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVDLRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISV 358
Cdd:COG4650 279 RSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 359 PPLRERDSDIAILAEHFVARLSSRMGI------PAKRI------STPAMgmlmcyhWPGNVRELENVIERAVLLCEGAVI 426
Cdd:COG4650 359 PGLAERREDIEPNLDYELARFAREQGRrvrfnkEARARylafatSPEAL-------WSGNFRDLNASVTRMATLAEGGRI 431
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
214-421 |
1.36e-34 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 138.32 E-value: 1.36e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 214 VLILGESGVGKELVASAIH----YNGS-NAEGPFVKFNCAAL---PESVIeSELFGHEYGAFTGAATPRRGRFEAADGGT 285
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYeyaiEIGVlPEDAPFVVFNCADYannPQLLM-SQLFGYVKGAFTGADKDKEGLIEKADGGI 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 286 IFLDEVGELSPAMQAKLLRVLQEKSFERVG-GNVTHQVDLRILAATSRDLramveQSRFrgdlyyrLNVF----P--ISV 358
Cdd:COG1221 212 LFLDEVHRLPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFATTEDP-----ESSL-------LKTFlrriPmvIKL 279
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2165432628 359 PPLRERDSD--IAILaEHFVARLSSRMGIPAKrISTPAMGMLMCYHWPGNVRELENVIEravLLC 421
Cdd:COG1221 280 PSLEERSLEerLELI-KHFFKEEAKRLNKPIK-VSKEVLKALLLYDCPGNIGQLKSDIQ---LAC 339
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
191-361 |
3.91e-22 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 92.02 E-value: 3.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 191 IGSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESelfgheygaftga 270
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 271 atprrgrfeaADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVggnvthqvdlRILAATSRDLRAMVEQSRFRGDLYYR 350
Cdd:pfam14532 68 ----------AKGGTLYLKDIADLSKALQKGLLLLLAKAEGYRV----------RLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 2165432628 351 LNVFPISVPPL 361
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
198-352 |
2.87e-21 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 90.28 E-value: 2.87e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 198 QEVHRLIEKVA--RSRATVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIESELFGHEYGAFtgaatpRR 275
Cdd:cd00009 4 EEAIEALREALelPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL------LF 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2165432628 276 GRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGnvthqVDLRILAATSRDLRamveqSRFRGDLYYRLN 352
Cdd:cd00009 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDR-----ENVRVIGATNRPLL-----GDLDRALYDRLD 144
|
|
| GAF |
smart00065 |
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ... |
33-163 |
5.16e-15 |
|
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Pssm-ID: 214500 [Multi-domain] Cd Length: 149 Bit Score: 72.41 E-value: 5.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 33 DLAGILRVLLELMQRHLKMARGMVTLRDP-ESGRIFVQQGCGLSEEEEASGYlALGEDIVAQAVDSGRTVVLP------- 104
Cdd:smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEnDRGELVLVAADGLTLPTLGIRF-PLDEGLAGRVAETGRPLNIPdveadpl 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2165432628 105 -------GEAGNQSLLCVPIRRDRKVLGTIVAERHYANRRMLELDAEILAILAALTAQAVELHLQE 163
Cdd:smart00065 80 faedllgRYQGVRSFLAVPLVADGELVGVLALHNKKSPRPFTEEDEELLQALANQLAIALANAQLY 145
|
|
| PtsP |
COG3605 |
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]; |
16-166 |
4.57e-14 |
|
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms];
Pssm-ID: 442824 [Multi-domain] Cd Length: 188 Bit Score: 70.70 E-value: 4.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 16 DLLPLLGELGRIPSEGSDLAGILRVLLELMQRHLKMARGMVTLRDPESGRIFVQQGCGLSEEEEASGYLALGEDIVAQAV 95
Cdd:COG3605 1 EMLKALRRISEAVASALDLDEALDRIVRRIAEALGVDVCSIYLLDPDGGRLELRATEGLNPEAVGKVRLPLGEGLVGLVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 96 DSGRTVVLP--------------GEAGNQSLLCVPIRRDRKVLGTIVAERHYAnRRMLELDAEILAILAALTAQAVELH- 160
Cdd:COG3605 81 ERGEPLNLAdaashprfkyfpetGEEGFRSFLGVPIIRRGRVLGVLVVQSREP-REFTEEEVEFLVTLAAQLAEAIANAe 159
|
....*.
gi 2165432628 161 LQEHVR 166
Cdd:COG3605 160 LLGELR 165
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
213-351 |
1.62e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 56.61 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 213 TVLILGESGVGKELVASAIHYNGSNAEGPFVKFNCAALPESVIES---ELFGHEYGAFTGAATPR--RGRFEAADGGTIF 287
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLRlaLALARKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2165432628 288 LDEVGELSPAMQAKLLRVLQEksfERVGGNVTHQVDLRILAATSR--DLRAMVEQSRFRGDLYYRL 351
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| GAF |
pfam01590 |
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl ... |
33-157 |
3.85e-08 |
|
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54. This domain can bind biliverdine and phycocyanobilin (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 460259 [Multi-domain] Cd Length: 133 Bit Score: 52.10 E-value: 3.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 33 DLAGILRVLLELMQRHLKMARGMVTLRDpESGRIFVQQGcglsEEEEASGYLALGEDIVAQAVDSGRTVVLP-------- 104
Cdd:pfam01590 1 DLEEILQTILEELRELLGADRCALYLPD-ADGLEYLPPG----ARWLKAAGLEIPPGTGVTVLRTGRPLVVPdaagdprf 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 105 -------GEAGNQSLLCVPIRRDRKVLGTIVAerHYANRRMLELDAEILAILAALTAQAV 157
Cdd:pfam01590 76 ldpllllRNFGIRSLLAVPIIDDGELLGVLVL--HHPRPPFTEEELELLEVLADQVAIAL 133
|
|
| GAF_2 |
pfam13185 |
GAF domain; The GAF domain is named after some of the proteins it is found in, including ... |
32-158 |
9.58e-08 |
|
GAF domain; The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes. The structure of a GAF domain shows that the domain shares a similar fold with the PAS domain. This domain can bind O2, CO and NO (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 433019 [Multi-domain] Cd Length: 137 Bit Score: 50.93 E-value: 9.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 32 SDLAGILRVLLELMQRHLKMARGMVTLRDPESGRIFvqqGCGLSEEEEASGYLALGEDIVAQAVDSGRTVVL-------- 103
Cdd:pfam13185 2 ADLEELLDAVLEAAVELGASAVGFILLVDDDGRLAA---WGGAADELSAALDDPPGEGLVGEALRTGRPVIVndlaadpa 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 104 -----PGEAGNQSLLCVPIRRDRKVLGTIVAeRHYANRRMLELDAEILAILAALTAQAVE 158
Cdd:pfam13185 79 kkglpAGHAGLRSFLSVPLVSGGRVVGVLAL-GSNRPGAFDEEDLELLELLAEQAAIAIE 137
|
|
| GAF |
COG2203 |
GAF domain [Signal transduction mechanisms]; |
20-490 |
2.28e-07 |
|
GAF domain [Signal transduction mechanisms];
Pssm-ID: 441805 [Multi-domain] Cd Length: 712 Bit Score: 53.66 E-value: 2.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 20 LLGELGRIPSEGSDLAGILRVLLELMQRHLKMARGMVTLRDPESGRIFVQQGCGLSEEEEASgyLALGEDIVAQAVDSGR 99
Cdd:COG2203 194 LLNEISQALRSALDLEELLQRILELAGELLGADRGAILLVDEDGGELELVAAPGLPEEELGR--LPLGEGLAGRALRTGE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 100 TVVLP----------------GEAGNQSLLCVPIRRDRKVLGTIVAErHYANRRMLELDAEILAILAALTAQAVELHLQE 163
Cdd:COG2203 272 PVVVNdastdprfapslrellLALGIRSLLCVPLLVDGRLIGVLALY-SKEPRAFTEEDLELLEALADQAAIAIERARLY 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 164 HVRKVALEDENHRLHSALQSRFkpssiigSSRPLQEVHRLIEKVARSRATVLILGESGVGKELVASAIHYNGSNAEGPFV 243
Cdd:COG2203 351 EALEAALAALLQELALLRLLLD-------LELTLLRLRQLLLELLLALLLLLSLLGAELLLLLLDAADLSGLLALEGLLL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 244 KFNCAALPESVIESELFGHEYGAFTGAATPRRGRFEAADGGTIFLDEVGELSPAMQAKLLRVLQEKSFERVGGNVTHQVD 323
Cdd:COG2203 424 LDLLLLLLLLRRILLLRVLRRLLLGDEEGLVLLLALAELELLEILELLVLLAVILLALALLAALLLLLLLLLALLALSAL 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 324 LRILAATSRDLRAMVEQSRFRGDLYYRLNVFPISVPPLRERDSDIAILAEHFVARLSSRMGIPAKRISTPAMGMLMCYHW 403
Cdd:COG2203 504 AVLASLLLALLLLLLLLLLLLLLGLLAALAADLLLLAAALLEDLLILLLVLLLERELLTLVGVLLLLGLSVLLIELALAL 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 404 PGNVRELENVIERAVLLCEGAVIEPHHLPPSLQTPAVSESPSAGGILDVRLGQAECELIAEALKRHKGNMTESAAHLGLT 483
Cdd:COG2203 584 ILALALLELLLVAVGDLLLLERDLLLLLVLLVRLLLELLVVTLELTVLVVLAAVEDSALLLRLALALASLVLLRALLATE 663
|
....*..
gi 2165432628 484 RRVLGLR 490
Cdd:COG2203 664 LDLILDS 670
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
454-493 |
3.46e-07 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 46.62 E-value: 3.46e-07
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2165432628 454 LGQAECELIAEALKRHKGNMTESAAHLGLTRRVLGLRMAR 493
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| GAF_3 |
pfam13492 |
GAF domain; |
33-158 |
5.86e-07 |
|
GAF domain;
Pssm-ID: 433253 [Multi-domain] Cd Length: 129 Bit Score: 48.52 E-value: 5.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 33 DLAGILRVLLELMQRHLKMARGMVTLRDPESGRIFVQQGCGlsEEEEASGYLALGEDIVAQAVDSGRTVVLPGEAG---- 108
Cdd:pfam13492 1 SLDEILEALLKLLVRLLGAERAAVYLLDEDGNKLQVAAGYD--GEPDPSESLDADSPLARRALSSGEPISGLGSAGedgl 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2165432628 109 -NQSLLCVPIRRDRKVLGTIVAERHyANRRMLELDAEILAILAALTAQAVE 158
Cdd:pfam13492 79 pDGPALVVPLVAGRRVIGVLALASS-KPRAFDAEDLRLLESLAAQIATAIE 128
|
|
| MsrC |
COG1956 |
GAF domain-containing protein, putative methionine-R-sulfoxide reductase [Defense mechanisms, ... |
85-159 |
2.50e-03 |
|
GAF domain-containing protein, putative methionine-R-sulfoxide reductase [Defense mechanisms, Signal transduction mechanisms];
Pssm-ID: 441559 [Multi-domain] Cd Length: 156 Bit Score: 38.65 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 85 ALGEDIVAQAVDSGRTVV------LPG----EAGNQSLLCVPIRRDRKVLGTIVAERHYANRrmleLDAEILAILAALTA 154
Cdd:COG1956 73 PFGKGVCGTAAAEGETQLvpdvhaFPGhiacDSASRSEIVVPIFKDGEVIGVLDIDSPTPGR----FDEEDQAGLEALAA 148
|
....*
gi 2165432628 155 QAVEL 159
Cdd:COG1956 149 LLAEA 153
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
214-309 |
4.27e-03 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 37.66 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165432628 214 VLILGESGVGKELVASAIHYNGSNAEgPFVKfncaALPESVIESELFGH-EYGAFTGAATPRRGRFEAADGGTIFLDEVG 292
Cdd:pfam07728 2 VLLVGPPGTGKTELAERLAAALSNRP-VFYV----QLTRDTTEEDLFGRrNIDPGGASWVDGPLVRAAREGEIAVLDEIN 76
|
90
....*....|....*..
gi 2165432628 293 ELSPAMQAKLLRVLQEK 309
Cdd:pfam07728 77 RANPDVLNSLLSLLDER 93
|
|
| |
