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Conserved domains on  [gi|2176768772|ref|WP_234057309|]
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MULTISPECIES: hypothetical protein [Enterobacterales]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MdlB super family cl34129
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
37-126 2.54e-03

ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];


The actual alignment was detected with superfamily member COG1132:

Pssm-ID: 440747 [Multi-domain]  Cd Length: 579  Bit Score: 36.68  E-value: 2.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2176768772  37 RLLSFLLPFRYLLAISLYLIVVVPLGVMAALRLLFQII-GGIAVVGLTIVWFMGAnvsgyAVLAAWLVLSLCGCAEQLFT 115
Cdd:COG1132    11 RLLRYLRPYRGLLILALLLLLLSALLELLLPLLLGRIIdALLAGGDLSALLLLLL-----LLLGLALLRALLSYLQRYLL 85

                          90
                  ....*....|.
gi 2176768772 116 WWTESRFAFRL 126
Cdd:COG1132    86 ARLAQRVVADL 96
 
Name Accession Description Interval E-value
MdlB COG1132
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
37-126 2.54e-03

ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];


Pssm-ID: 440747 [Multi-domain]  Cd Length: 579  Bit Score: 36.68  E-value: 2.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2176768772  37 RLLSFLLPFRYLLAISLYLIVVVPLGVMAALRLLFQII-GGIAVVGLTIVWFMGAnvsgyAVLAAWLVLSLCGCAEQLFT 115
Cdd:COG1132    11 RLLRYLRPYRGLLILALLLLLLSALLELLLPLLLGRIIdALLAGGDLSALLLLLL-----LLLGLALLRALLSYLQRYLL 85

                          90
                  ....*....|.
gi 2176768772 116 WWTESRFAFRL 126
Cdd:COG1132    86 ARLAQRVVADL 96
 
Name Accession Description Interval E-value
MdlB COG1132
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
37-126 2.54e-03

ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];


Pssm-ID: 440747 [Multi-domain]  Cd Length: 579  Bit Score: 36.68  E-value: 2.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2176768772  37 RLLSFLLPFRYLLAISLYLIVVVPLGVMAALRLLFQII-GGIAVVGLTIVWFMGAnvsgyAVLAAWLVLSLCGCAEQLFT 115
Cdd:COG1132    11 RLLRYLRPYRGLLILALLLLLLSALLELLLPLLLGRIIdALLAGGDLSALLLLLL-----LLLGLALLRALLSYLQRYLL 85

                          90
                  ....*....|.
gi 2176768772 116 WWTESRFAFRL 126
Cdd:COG1132    86 ARLAQRVVADL 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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