NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2176995005|ref|WP_234242512|]
View 

MULTISPECIES: Lin1244/Lin1753 domain-containing protein [Phocaeicola]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4373 super family cl16782
Domain of unknown function (DUF4373); This domain is found in bacteria, eukaryotes and viruses, ...
 18-68 2.16e-09

Domain of unknown function (DUF4373); This domain is found in bacteria, eukaryotes and viruses, and is approximately 90 amino acids in length.


The actual alignment was detected with superfamily member pfam14297:

Pssm-ID: 433848  Cd Length: 88  Bit Score: 49.18  E-value: 2.16e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 2176995005 18 HFYDTKVKRLKNKFGMEDWGVFHFIVNEIYRVEGCYNCNLQIFLCLFLEKL 68
Cdd:pfam14297  1 FFSDDKIRRLRAEYGAKGYAIYIYLLCEIYREDGYYIEWDEDQLLLLADKY 51
 
Name Accession Description Interval E-value
DUF4373 pfam14297
Domain of unknown function (DUF4373); This domain is found in bacteria, eukaryotes and viruses, ...
 18-68 2.16e-09

Domain of unknown function (DUF4373); This domain is found in bacteria, eukaryotes and viruses, and is approximately 90 amino acids in length.


Pssm-ID: 433848  Cd Length: 88  Bit Score: 49.18  E-value: 2.16e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 2176995005 18 HFYDTKVKRLKNKFGMEDWGVFHFIVNEIYRVEGCYNCNLQIFLCLFLEKL 68
Cdd:pfam14297  1 FFSDDKIRRLRAEYGAKGYAIYIYLLCEIYREDGYYIEWDEDQLLLLADKY 51
 
Name Accession Description Interval E-value
DUF4373 pfam14297
Domain of unknown function (DUF4373); This domain is found in bacteria, eukaryotes and viruses, ...
 18-68 2.16e-09

Domain of unknown function (DUF4373); This domain is found in bacteria, eukaryotes and viruses, and is approximately 90 amino acids in length.


Pssm-ID: 433848  Cd Length: 88  Bit Score: 49.18  E-value: 2.16e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 2176995005 18 HFYDTKVKRLKNKFGMEDWGVFHFIVNEIYRVEGCYNCNLQIFLCLFLEKL 68
Cdd:pfam14297  1 FFSDDKIRRLRAEYGAKGYAIYIYLLCEIYREDGYYIEWDEDQLLLLADKY 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH