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Conserved domains on  [gi|2177623087|ref|WP_234358239|]
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MULTISPECIES: hypothetical protein, partial [Pseudomonadaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK00049 super family cl35051
elongation factor Tu; Reviewed
 1-21 6.04e-13

elongation factor Tu; Reviewed


The actual alignment was detected with superfamily member PRK00049:

Pssm-ID: 234596 [Multi-domain]  Cd Length: 396  Bit Score: 58.66  E-value: 6.04e-13
                          10        20
                  ....*....|....*....|.
gi 2177623087   1 MAKEKFERNKPHVNVGTIGHV 21
Cdd:PRK00049    1 MAKEKFERTKPHVNVGTIGHV 21
 
Name Accession Description Interval E-value
PRK00049 PRK00049
elongation factor Tu; Reviewed
 1-21 6.04e-13

elongation factor Tu; Reviewed


Pssm-ID: 234596 [Multi-domain]  Cd Length: 396  Bit Score: 58.66  E-value: 6.04e-13
                          10        20
                  ....*....|....*....|.
gi 2177623087   1 MAKEKFERNKPHVNVGTIGHV 21
Cdd:PRK00049    1 MAKEKFERTKPHVNVGTIGHV 21
TufA COG0050
Translation elongation factor EF-Tu, a GTPase [Translation, ribosomal structure and biogenesis] ...
 1-21 1.43e-12

Translation elongation factor EF-Tu, a GTPase [Translation, ribosomal structure and biogenesis]; Translation elongation factor EF-Tu, a GTPase is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 439820 [Multi-domain]  Cd Length: 396  Bit Score: 57.47  E-value: 1.43e-12
                          10        20
                  ....*....|....*....|.
gi 2177623087   1 MAKEKFERNKPHVNVGTIGHV 21
Cdd:COG0050     1 MAKEKFERTKPHVNIGTIGHV 21
EF-Tu TIGR00485
translation elongation factor TU; This model models orthologs of translation elongation factor ...
 1-21 8.65e-10

translation elongation factor TU; This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. [Protein synthesis, Translation factors]


Pssm-ID: 129576 [Multi-domain]  Cd Length: 394  Bit Score: 49.78  E-value: 8.65e-10
                          10        20
                  ....*....|....*....|.
gi 2177623087   1 MAKEKFERNKPHVNVGTIGHV 21
Cdd:TIGR00485   1 MAKEKFERTKPHVNVGTIGHV 21
EF_Tu cd01884
Elongation Factor Tu (EF-Tu) GTP-binding proteins; EF-Tu subfamily. This subfamily includes ...
 11-21 5.78e-04

Elongation Factor Tu (EF-Tu) GTP-binding proteins; EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.


Pssm-ID: 206671 [Multi-domain]  Cd Length: 195  Bit Score: 33.33  E-value: 5.78e-04
                          10
                  ....*....|.
gi 2177623087  11 PHVNVGTIGHV 21
Cdd:cd01884     1 PHVNVGTIGHV 11
 
Name Accession Description Interval E-value
PRK00049 PRK00049
elongation factor Tu; Reviewed
 1-21 6.04e-13

elongation factor Tu; Reviewed


Pssm-ID: 234596 [Multi-domain]  Cd Length: 396  Bit Score: 58.66  E-value: 6.04e-13
                          10        20
                  ....*....|....*....|.
gi 2177623087   1 MAKEKFERNKPHVNVGTIGHV 21
Cdd:PRK00049    1 MAKEKFERTKPHVNVGTIGHV 21
TufA COG0050
Translation elongation factor EF-Tu, a GTPase [Translation, ribosomal structure and biogenesis] ...
 1-21 1.43e-12

Translation elongation factor EF-Tu, a GTPase [Translation, ribosomal structure and biogenesis]; Translation elongation factor EF-Tu, a GTPase is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 439820 [Multi-domain]  Cd Length: 396  Bit Score: 57.47  E-value: 1.43e-12
                          10        20
                  ....*....|....*....|.
gi 2177623087   1 MAKEKFERNKPHVNVGTIGHV 21
Cdd:COG0050     1 MAKEKFERTKPHVNIGTIGHV 21
PRK12735 PRK12735
elongation factor Tu; Reviewed
 1-21 2.02e-12

elongation factor Tu; Reviewed


Pssm-ID: 183708 [Multi-domain]  Cd Length: 396  Bit Score: 57.16  E-value: 2.02e-12
                          10        20
                  ....*....|....*....|.
gi 2177623087   1 MAKEKFERNKPHVNVGTIGHV 21
Cdd:PRK12735    1 MAKEKFERTKPHVNVGTIGHV 21
tufA CHL00071
elongation factor Tu
 1-21 3.23e-11

elongation factor Tu


Pssm-ID: 177010 [Multi-domain]  Cd Length: 409  Bit Score: 53.81  E-value: 3.23e-11
                          10        20
                  ....*....|....*....|.
gi 2177623087   1 MAKEKFERNKPHVNVGTIGHV 21
Cdd:CHL00071    1 MAREKFERKKPHVNIGTIGHV 21
PRK12736 PRK12736
elongation factor Tu; Reviewed
 1-21 7.13e-11

elongation factor Tu; Reviewed


Pssm-ID: 237184 [Multi-domain]  Cd Length: 394  Bit Score: 52.64  E-value: 7.13e-11
                          10        20
                  ....*....|....*....|.
gi 2177623087   1 MAKEKFERNKPHVNVGTIGHV 21
Cdd:PRK12736    1 MAKEKFDRSKPHVNIGTIGHV 21
EF-Tu TIGR00485
translation elongation factor TU; This model models orthologs of translation elongation factor ...
 1-21 8.65e-10

translation elongation factor TU; This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. [Protein synthesis, Translation factors]


Pssm-ID: 129576 [Multi-domain]  Cd Length: 394  Bit Score: 49.78  E-value: 8.65e-10
                          10        20
                  ....*....|....*....|.
gi 2177623087   1 MAKEKFERNKPHVNVGTIGHV 21
Cdd:TIGR00485   1 MAKEKFERTKPHVNVGTIGHV 21
PLN03126 PLN03126
Elongation factor Tu; Provisional
 2-21 2.63e-08

Elongation factor Tu; Provisional


Pssm-ID: 215592 [Multi-domain]  Cd Length: 478  Bit Score: 45.76  E-value: 2.63e-08
                          10        20
                  ....*....|....*....|
gi 2177623087   2 AKEKFERNKPHVNVGTIGHV 21
Cdd:PLN03126   71 ARGKFERKKPHVNIGTIGHV 90
PLN03127 PLN03127
Elongation factor Tu; Provisional
 2-21 3.85e-06

Elongation factor Tu; Provisional


Pssm-ID: 178673 [Multi-domain]  Cd Length: 447  Bit Score: 39.42  E-value: 3.85e-06
                          10        20
                  ....*....|....*....|
gi 2177623087   2 AKEKFERNKPHVNVGTIGHV 21
Cdd:PLN03127   51 SMATFTRTKPHVNVGTIGHV 70
EF_Tu cd01884
Elongation Factor Tu (EF-Tu) GTP-binding proteins; EF-Tu subfamily. This subfamily includes ...
 11-21 5.78e-04

Elongation Factor Tu (EF-Tu) GTP-binding proteins; EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.


Pssm-ID: 206671 [Multi-domain]  Cd Length: 195  Bit Score: 33.33  E-value: 5.78e-04
                          10
                  ....*....|.
gi 2177623087  11 PHVNVGTIGHV 21
Cdd:cd01884     1 PHVNVGTIGHV 11
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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