|
Name |
Accession |
Description |
Interval |
E-value |
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
1-1014 |
0e+00 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 929.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 1 MRLPEICIRHPIFASVISIMIVLIGLVSFGKLPIQYFPDYNTHSASVSASINGASAEFMSENVADKLIDAASGLDKVDTM 80
Cdd:COG0841 1 MNLSRFFIRRPVAAIVLSLLILLAGLLAYLRLPVEQFPDIDPPTVTVSTTYPGASPEEVESTVTTPIEEALNGVEGIKYI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 81 TTDCQEGSCTLSINFSKEID-DIeytnLMNKLRSSVEAI-NDFPQSMiDKPRVTDdVSATHSASNIISFVNEGgMTKQQM 158
Cdd:COG0841 81 TSTSSEGSSSITVEFELGTDiDE----ALVDVQNAVDRArSDLPEDV-EPPGVTK-VNPSDFPVMVLALSSDD-LDELEL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 159 YDYISQQLVPQFKHLSGVGAVWgPYGGSQRAARVWLNPDQMKALNIKAADVVATLSTYNATFTSGTIVGKSRDFSINPLS 238
Cdd:COG0841 154 SDYAERNIKDRLERVPGVGQVQ-IFGGREREIRIWLDPDKLAAYGLTLADVANAIRAQNVDVPAGRIGGGDREYTVRTNG 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 239 QVENIEDIRDLVIRVDNGKIIRMKDIANVVMGEENLRpSLLSIGGHQAMSLQILPLANANPVTVAQTIRAEIDRMQHQLP 318
Cdd:COG0841 233 RLKTPEEFENIVIRTNDGSVVRLGDVARVEDGAEDYR-SIARLNGKPAVGLAIQKQPGANALEVADAVRAKLEELQASLP 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 319 TGLKMQLVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLTILAI 398
Cdd:COG0841 312 EGVELTIVYDQSEFIRASIEEVVKTLLEAILLVVLVVFLFLRSWRATLIPAVAIPVSLIGTFAVMYLLGFSLNILTLFAL 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 399 ILAIGLVVDDAIVVVENCYRHIEKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVI 478
Cdd:COG0841 392 VLAIGIVVDDAIVVVENIERHMEEGLSPLEAAIKGAREVAGAVIASTLTLVAVFLPLAFMGGITGQLFRQFALTVAIALL 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 479 ISGVVALTLSPMMSAYLIQQSH--KHPAWFQRVELGLERLIERYSQELELWFNRKRLLAGIALLLVVSGGVLYWYMPKVL 556
Cdd:COG0841 472 ISLFVALTLTPALCARLLKPHPkgKKGRFFRAFNRGFDRLTRGYGRLLRWALRHRKLTLLVALALLALSVLLFGRLPTEF 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 557 LPTEDSGFIDASAKGPTGVGRQYHLNHNAELNSVMDDNPNVAANLAYIEGGPVNH--------VLLKPWGERSDTAAEVI 628
Cdd:COG0841 552 FPEEDQGQIIVSVQLPPGTSLERTEAVVRQVEEILLEVPEVESVFSVVGFSGGGSgsnsgtifVTLKPWDERDRSADEII 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 629 DQLIAKAKqQVSAYNMSFSVRSADGLNIPTNLQLQLmtLDRDKDALAHTAEKVVKLLEDYPGLTNINNSTLRDLPRFDLS 708
Cdd:COG0841 632 ARLREKLA-KIPGARVFVFQPPAGGLGSGAPIEVQL--QGDDLEELAAAAEKLLAALRQIPGLVDVRSDLQLGKPELQLD 708
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 709 IDRNAVILSGASYSDVTNALSTFLGSVKAADLhSDDGFTYPIQVQVNLEMLGDFNVLSKLYVTSESGEALPLSQFVTIKQ 788
Cdd:COG0841 709 IDREKAAALGVTVADVASTLRAALGGRYVNDF-NRGGREYDVRVQAPEEDRNSPEDLENLYVRTPDGEMVPLSSVATIEE 787
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 789 ATAESNIKTFMGRDAALISADLMPGYSPGEIKLWLDEQLPSL-LAPSQGYAYNGIIKELMDSQAGTQSLFLLALVFIYLI 867
Cdd:COG0841 788 GTGPSSINRYNGQRSVTVSANLAPGVSLGEALAAIEELAAELkLPPGVSIEFTGQAEEEQESFSSLGLAFLLALLLVYLV 867
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 868 LAAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQIGLLTLVGLVTKHGILLVEFANKQRQAGKSALDAAMASA 947
Cdd:COG0841 868 LAAQFESFIQPLIILLTVPLALIGALLGLLLTGTPLNIYSQIGLIMLIGIVVKNAILLVDFANQLREEGMSLREAILEAA 947
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2178769604 948 RSRLRPILMTSLAMILSAIPLAIASGPGSLGRINIGLVLVGGLLMGTFFSLFVVPVAYLAMSQLKQK 1014
Cdd:COG0841 948 RLRLRPILMTSLATILGLLPLALGTGAGAEFRQPLGIAVIGGLLFSTLLTLFVVPVLYVLLDRLRRR 1014
|
|
| RND_permease_2 |
NF033617 |
multidrug efflux RND transporter permease subunit; |
7-1009 |
0e+00 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 411236 [Multi-domain] Cd Length: 1009 Bit Score: 798.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 7 CIRHPIFASVISIMIVLIGLVSFGKLPIQYFPDYNTHSASVSASINGASAEFMSENVADKLIDAASGLDKVDTMTTDCQE 86
Cdd:NF033617 4 FIKRPVATLLLSLLILLLGLLAFRKLPVREYPEVDFPTITVSTSYPGASPELMQSSITQPLEQQLAQIEGIDEMTSQSSL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 87 GSCTLSINFSKEID-DIEYTNLMNKLRSsveAINDFPQSMIDKPrVTDDVSATHSASNIISFVNEGgMTKQQMYDYISQQ 165
Cdd:NF033617 84 GYSTITLQFRLGTDlDVALSEVQAAINA---AQSLLPSEAPDPP-VYRKANSADTPIMYIGLTSEE-MPRGQLTDYAERV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 166 LVPQFKHLSGVGAVwGPYGGSQRAARVWLNPDQMKALNIKAADVVATLSTYNATFTSGTIVGKSRDFSINPLSQVENIED 245
Cdd:NF033617 159 LAPKLSQINGVGSV-DVSGGQRPAMRVWLDPEKMAARGLTADDVRSALNSNNVNSPKGAVRGDSVVSTVRANDQLKTAED 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 246 IRDLVIRV-DNGKIIRMKDIANVVMGEENLRPSLLSiGGHQAMSLQILPLANANPVTVAQTIRAEIDRMQHQLPTGLKMQ 324
Cdd:NF033617 238 YEDLVIKYaDNGAPVRLGDVATVELGAENVRNRAWA-NGVPAVVLGINRQPGANPIEVADEIRALLPELQETLPKNIKVN 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 325 LVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLTILAIILAIGL 404
Cdd:NF033617 317 VLYDRTRFIRASIDEVESTLLEAVALVILVVFLFLRNLRATLIPAVTVPLSLIGTFAVMYLFGFSINLLTLMALVLAIGL 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 405 VVDDAIVVVENCYRHIEKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVIISGVVA 484
Cdd:NF033617 397 VVDDAIVVVENIHRHIEEGESPLEAALKGAREIGFTVIAMTLTLVAVYLPILFMGGLTGRLFREFAVTLAGAVIISGIVA 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 485 LTLSPMMSAYLIQQSHKHPAWFQRVELGLERLIERYSQELELWFNRKRLLAGIALLLVVSGGVLYWYMPKVLLPTEDSGF 564
Cdd:NF033617 477 LTLTPMMCSRLLKANEKPGRFARAVDRFFDGLTARYGRGLKWVLKHRPLTLVVALATLALLPLLYVFIPKELAPSEDRGV 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 565 IDASAKGPTGVGRQYHLNHNAELNSVMDDNPNVAANLAYIEGGPVNH-------VLLKPWGERSDTAAEVIDQLIAKAKQ 637
Cdd:NF033617 557 IFGMIQAPQSISLDYMSAKMRDVEKILSSDPEVQSLTSFNGVGGNPGdntgfgiINLKPWDERDVSAQEIIDRLRPKLAK 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 638 QVSAYNMSFSVRSADGLNIPTNLQLQLMTLDRDKDALAHTAEKVVKLLEDYPGLTNINNSTLRDLPRFDLSIDRNAVILS 717
Cdd:NF033617 637 VPGMDLFLFPLQDLPGGAGSSLPQYQVTLTPSDYDSLFTWAEKLKEKLRKSPQFADVDSDLQDKGPELNVDIDRDKAARL 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 718 GASYSDVTNALSTFLGSVKAADLHSdDGFTYPIQVQVNLEMLGDFNVLSKLYVTSESGEALPLSQFVTIKQATAESNIKT 797
Cdd:NF033617 717 GISMQDIGSTLEVAFGQRQVNTIYT-DGNQYKVVLEVDRRYRLNPEALNQIYVRSNDGKLVPLSTLAKIEERAAPLSLNH 795
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 798 FMGRDAALISADLMPGYSPGEIKLWLDEQLPSLLAPSQGYAYNGIIKELMDSQAGTQSLFLLALVFIYLILAAQFESFVD 877
Cdd:NF033617 796 FNQFNSATLSFNLAPGVSLGEAIEALDQAAKELLPSGISGSFQGAARAFQEEGSSLLFLFLLALAAIYLVLAIQYESFVD 875
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 878 PLIILLTVPLCLVGALLTLNLFGQSMNIYSQIGLLTLVGLVTKHGILLVEFANK-QRQAGKSALDAAMASARSRLRPILM 956
Cdd:NF033617 876 PLTILSTVPLAGCGALLALALGGQSMNIYAQIGLITLIGLVKKNGILMVEFANElQRHQGLSRREAIYQAAALRLRPILM 955
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|...
gi 2178769604 957 TSLAMILSAIPLAIASGPGSLGRINIGLVLVGGLLMGTFFSLFVVPVAYLAMS 1009
Cdd:NF033617 956 TTLAMLLGAIPLMLSTGAGAESRFPLGIVIVGGLGVGTLFTLFVLPVVYLLLA 1008
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
8-1006 |
0e+00 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 706.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 8 IRHPIFASVISIMIVLIGLVSFGKLPIQYFPDYNTHSASVSASINGASAEFMSENVADKLIDAASGLDKVDTMTTDCQEG 87
Cdd:pfam00873 6 IRRPIFTLVLAIAILLAGILSFFSLPVDAFPEIAPPTVQVSTSYPGASPEEVEDTVTQPIEQAMNGLDGLKYMSSQSSYG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 88 SCTLSINFSKEID-DIEYTNLMNKLRSsveAINDFPQSMiDKPRVTDDVSathSASNIISFV---NEGGMTKQQMYDYIS 163
Cdd:pfam00873 86 LSSITLTFELGTDiDIARQDVQNRLQL---ATPLLPEGV-QRPGISVIKT---SLGPIMVLAvtsPDGSYTQTDLRDYAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 164 QQLVPQFKHLSGVGAVwGPYGGSQRAARVWLNPDQMKALNIKAADVVATLSTYNATFTSGTIVGKSRDFSINPLSQVENI 243
Cdd:pfam00873 159 TNIKPQLSRVPGVGDV-QLFGGSEYAMRIWLDPQKLARYGLTLTDVVSALKEQNVNIGAGQLEGQGLQALIRAQGQLQSA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 244 EDIRDLVIRVDNGKIIRMKDIANVVMGEENLRpSLLSIGGHQAMSLQILPLANANPVTVAQTIRAEIDRMQHQLPTGLKM 323
Cdd:pfam00873 238 EDFEKIIVKNQDGSPVRLRDVATVELGSELYR-GFATFNGKPAVGLGVQKLPGANAIETADAVRAKLAELKPTFPQGVEI 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 324 QLVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLTILAIILAIG 403
Cdd:pfam00873 317 VVVYDTTPFIRASIEEVVKTLLEAIVLVILVMFLFLQNWRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLVLAIG 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 404 LVVDDAIVVVENCYRHI-EKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVIISGV 482
Cdd:pfam00873 397 LVVDDAIVVVENIERVLeENGLKPLEAAYKSMGEIGGALVAIALVLSAVFLPILFLGGLTGRIFRQFAITIVLAILLSVL 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 483 VALTLSPMMSAYLIQQSHKHP-----AWFQRVelgLERLIERYSQELELWFNRKRLLAGIALLLVVSGGVLYWYMPKVLL 557
Cdd:pfam00873 477 VALTLTPALCATLLKPRREPKhggffRWFNRM---FDRLTRGYAKLLAKVLRHTAVVLLVALLLVVGSVWLFVRIPTEFL 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 558 PTEDSGFIDASAKGPTGVGRQYHLNHNAELNSVMDDNPNVAANLA------YIEGGPVN----HVLLKPWGER---SDTA 624
Cdd:pfam00873 554 PEEDEGVFVTSAQLPPGVSLDQTQRVMKQVEKILKEKPEVESVFAvtgfafSGDNNGPNsgdaFISLKPWKERpgpEKSV 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 625 AEVIDQLIAKAKQQVSAYNMSFSVRSADGLNIPT--NLQLQLMTLDRDKDALAHTAEKVVKLLEDYPGLTNINNSTLRDL 702
Cdd:pfam00873 634 QALIERLRKALKQIPGANVFLFQPIQLRGLGTISgfRSDLQVKIFGDDLDALDEARNQILAALAQLPGLSDVRSDGQEDQ 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 703 PRFDLSIDRNAVILSGASYSDVTNALSTFLGSVKAADLHsDDGFTYPIQVQVNLEMLGDFNVLSKLYVTSESGEALPLSQ 782
Cdd:pfam00873 714 PQLQVNIDREKAARLGVSIQDINDTLSTALGGSYVNDFP-EGGRVYDVVVQLPEDFRSSPEDIGQLYVRNPYGKMIPLSA 792
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 783 FVTIKQATAESNIKTFMGRDAALISADLMPGYSPGEI-----KLWLDEQLPsllaPSQGYAYNGIIKELMDSQAGTQSLF 857
Cdd:pfam00873 793 FAKIEWGYGPPSINRYNGFRSIVISGNVAAGDSLGDAmeamaQIAKQVKLP----PGYGYTWTGQFEQEQLAGNSLPILI 868
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 858 LLALVFIYLILAAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQIGLLTLVGLVTKHGILLVEFAN-KQRQAG 936
Cdd:pfam00873 869 ALALLVVFLVLAALYESWSDPLSIMLTVPLALVGALLALWLRGLPNSVYAQVGLILLIGLAVKNAILMVEFANeLREQEG 948
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 937 KSALDAAMASARSRLRPILMTSLAMILSAIPLAIASGPGSLGRINIGLVLVGGLLMGTFFSLFVVPVAYL 1006
Cdd:pfam00873 949 KSLEEAILEACRLRLRPILMTALAAILGVLPLALSTGAGSELQQPLGIVVFGGLVTSTVLTLLVVPVFYV 1018
|
|
| 2A0602 |
TIGR00915 |
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ... |
8-1011 |
0e+00 |
|
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 273335 [Multi-domain] Cd Length: 1044 Bit Score: 602.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 8 IRHPIFASVISIMIVLIGLVSFGKLPIQYFPDYNTHSASVSASINGASAEFMSENVADKLIDAASGLDKVDTM-TTDCQE 86
Cdd:TIGR00915 6 IDRPIFAWVIAIIIMLAGTLSILSLPVSQYPSIAPPAITVSASYPGASAQTVQDTVTQVIEQNMNGIDGLRYMsSSSDSD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 87 GSCTLSINFSKEID-DIEYTNLMNKLRssvEAINDFPQSMIDKprvtdDVSATHSASN---IISFVNE-GGMTKQQMYDY 161
Cdd:TIGR00915 86 GSMTITLTFEQGTDpDIAQVQVQNKLQ---LATPLLPQEVQRQ-----GVRVEKASSNflmVIGLVSDdGSMTKEDLSDY 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 162 ISQQLVPQFKHLSGVGAVwgPYGGSQRAARVWLNPDQMKALNIKAADVVATLSTYNATFTSGTI------VGKSRDFSIN 235
Cdd:TIGR00915 158 AASNMVDPLSRLEGVGDV--QLFGSQYAMRIWLDPAKLNSYQLTPADVISAISAQNAQISAGQLgglpavPGQQLNATII 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 236 PLSQVENIEDIRDLVIRVD-NGKIIRMKDIANVVMGEENLRpSLLSIGGHQAMSLQILPLANANPVTVAQTIRAEIDRMQ 314
Cdd:TIGR00915 236 AQTRLQTPEQFENILLKVNtDGSQVRLKDVARVELGGENYS-ISARFNGKPASGLAIKLATGANALDTAKAVKAELAVLE 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 315 HQLPTGLKMQLVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLT 394
Cdd:TIGR00915 315 PFFPQGMKYVYPYDTTPFVEASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLT 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 395 ILAIILAIGLVVDDAIVVVENCYRHI-EKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTL 473
Cdd:TIGR00915 395 MFAMVLAIGLLVDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITI 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 474 AAAVIISGVVALTLSPMMSAYL---IQQSHKHP------AWFQRVelgLERLIERYSQELELWFNRKRLLAGIALLLVVS 544
Cdd:TIGR00915 475 VSAMALSVLVALILTPALCATMlkpIEKGEHHEkkggffGWFNRM---FDSSTHGYENGVGKILRRRGRYLLVYVLLVGG 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 545 GGVLYWYMPKVLLPTEDSGFIDASAKGPTGVG-----------RQYHLNHNA-ELNSVMDDN--------PNVAanLAYI 604
Cdd:TIGR00915 552 MVFLFVRLPTSFLPDEDQGVFMTIVQLPAGATaertqavlaqvTKYLLAKEKaNVESVFTVNgfsfagrgQNMG--MAFI 629
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 605 eggpvnhvLLKPWGERS---DTAAEVIDQLIAKAKQQVSAYNMSFSVRSADGLNIPTNLQLQLMtlDR---DKDALAHTA 678
Cdd:TIGR00915 630 --------RLKDWEERTgkeNSVFAIAGRATGHFMQIKDAMVIAFVPPAILELGNATGFDFFLQ--DRaglGHEALLQAR 699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 679 EKVVKLLEDYPGLTNINNSTLRDLPRFDLSIDRNAVILSGASYSDVTNALSTFLGSVKAADLhSDDGFTYPIQVQVN--L 756
Cdd:TIGR00915 700 NQLLGLAAQNPALTRVRPNGLEDEPQLKIDIDREKAQALGVSIADINTTLSTAWGSSYVNDF-IDRGRVKRVYVQAEedA 778
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 757 EMLGDfnVLSKLYVTSESGEALPLSQFVTIKQATAESNIKTFMGRDAALISADLMPGYSPGEiKLWLDEQLPSLLAPSQG 836
Cdd:TIGR00915 779 RMSPE--DINKWYVRNASGEMVPFSAFATVRWEYGSPQLERYNGLPSMEILGSAAPGVSTGQ-AMAAMEAIAQKLPPGFG 855
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 837 YAYNGIIKELMDSQAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQIGLLTLVG 916
Cdd:TIGR00915 856 FSWTGMSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPVSVMLVVPLGIIGALLATTLRGLSNDVYFQVGLLTTIG 935
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 917 LVTKHGILLVEFANKQRQAGKSALDAAMASARSRLRPILMTSLAMILSAIPLAIASGPGSLGRINIGLVLVGGLLMGTFF 996
Cdd:TIGR00915 936 LSAKNAILIVEFAKELMAQGKSIVEAALEAARLRLRPILMTSLAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVL 1015
|
1050
....*....|....*
gi 2178769604 997 SLFVVPVAYLAMSQL 1011
Cdd:TIGR00915 1016 AIFFVPLFYVVVRRL 1030
|
|
| PRK09579 |
PRK09579 |
multidrug efflux RND transporter permease subunit; |
1-1010 |
0e+00 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169983 [Multi-domain] Cd Length: 1017 Bit Score: 586.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 1 MRLPEICIRHPIFASVISIMIVLIGLVSFGKLPIQYFPDYNTHSASVSASINGASAEFMSENVADKLIDAASGLDKVDTM 80
Cdd:PRK09579 1 MAFTDPFIRRPVLASVVSLLIVLLGFQAWSKLQIRQYPQMENALITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 81 TTDCQEGSCTLSINFSKEID-DIEYTNLMNKlrsSVEAINDFPQSMIDKprVTDDVSATHSASNIISFVNEGgMTKQQMY 159
Cdd:PRK09579 81 TSVSRQNFSIISIYARIGADsDRLFTELLAK---ANEVKNQLPQDAEDP--VLSKEAADASALMYISFYSEE-MSNPQIT 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 160 DYISQQLVPQFKHLSGVgAVWGPYGGSQRAARVWLNPDQMKALNIKAADVVATLSTYNATFTSGTIVGKSRDFSINPLSQ 239
Cdd:PRK09579 155 DYLSRVIQPKLATLPGM-AEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVTQAVRRYNFLSAAGEVKGEYVVTSINASTE 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 240 VENIEDIRDLVIRVDNGKIIRMKDIANVVMGEENLRpSLLSIGGHQAMSLQILPLANANPVTVAQTIRAEIDRMQHQLPT 319
Cdd:PRK09579 234 LKSAEAFAAIPVKTSGDSRVLLGDVARVEMGAENYD-SISSFDGIPSVYIGIKATPSANPLDVIKEVRAIMPELESQLPP 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 320 GLKMQLVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLTILAII 399
Cdd:PRK09579 313 NLKVSIAYDATLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSINLLTLLAMV 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 400 LAIGLVVDDAIVVVENCYRHIEKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVII 479
Cdd:PRK09579 393 LAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVII 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 480 SGVVALTLSPMMSAYLIQQSHKHPAWFQRVELGLERLIERYSQELELWFNRKRLLAGIALLLVVSGGVLYWYMPKVLLPT 559
Cdd:PRK09579 473 SGIVALTLSPMMCALLLRHEENPSGLAHRLDRLFERLKQRYQRALHGTLNTRPVVLVFAVIVLALIPVLLKFTQSELAPE 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 560 EDSGFIDASAKGPTGVGRQYHLNHNAELNSVMDDNPNVAANLAyIEG-----GPVNHVLLKPWGERSDTAAEVIDQLIAK 634
Cdd:PRK09579 553 EDQGIIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEYYSSFQ-INGfngvqSGIGGFLLKPWNERERTQMELLPLVQAK 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 635 AKQ----QVSAYNMSFSVRSADGLniptNLQLQLMTLDrDKDALAHTAEKVVKLLEDYPGLTNINNSTLRDLPRFDLSID 710
Cdd:PRK09579 632 LEEipglQIFGFNLPSLPGTGEGL----PFQFVINTAN-DYESLLQVAQRVKQRAQESGKFAFLDIDLAFDKPEVVVDID 706
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 711 RNAVILSGASYSDVTNALSTFLGSVKaADLHSDDGFTYPIQVQVNLEMLGDFNVLSKLYVTSESGEALPLSQFVTIKQAT 790
Cdd:PRK09579 707 RAKAAQMGVSMQDLGGTLATLLGEGE-INRFTIDGRSYKVIAQVERPYRDNPGWLNNYYVKNEQGQLLPLSTLITLSDRA 785
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 791 AESNIKTFMGRDAALISAdlMPGYSPGEiKLWLDEQLPSLLAPsQGYA--YNGIIKELMDSQAGTQSLFLLALVFIYLIL 868
Cdd:PRK09579 786 RPRQLNQFQQLNSAIISG--FPIVSMGE-AIETVQQIAREEAP-EGFAfdYAGASRQYVQEGSALWVTFGLALAIIFLVL 861
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 869 AAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQIGLLTLVGLVTKHGILLVEFANKQR-QAGKSALDAAMASA 947
Cdd:PRK09579 862 AAQFESFRDPLVILVTVPLSICGALIPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRhEQGLSRREAIEEAA 941
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2178769604 948 RSRLRPILMTSLAMILSAIPLAIASGPGSLGRINIGLVLVGGLLMGTFFSLFVVPVAYLAMSQ 1010
Cdd:PRK09579 942 AIRLRPVLMTTAAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCIYTLLAK 1004
|
|
| PRK10555 |
PRK10555 |
multidrug efflux RND transporter permease AcrD; |
8-1006 |
1.87e-154 |
|
multidrug efflux RND transporter permease AcrD;
Pssm-ID: 182544 [Multi-domain] Cd Length: 1037 Bit Score: 484.72 E-value: 1.87e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 8 IRHPIFASVISIMIVLIGLVSFGKLPIQYFPDYNTHSASVSASINGASAEFMSENVADKLIDAASGLDKVDTMTTDCQE- 86
Cdd:PRK10555 6 IDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGt 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 87 GSCTLSINFSKEID-DIEYTNLMNKLRSsveAINDFPQSmIDKPRVTddVSAThSASNI--ISFVN-EGGMTKQQMYDYI 162
Cdd:PRK10555 86 GQASVTLSFKAGTDpDEAVQQVQNQLQS---AMRKLPQA-VQNQGVT--VRKT-GDTNIltIAFVStDGSMDKQDIADYV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 163 SQQLVPQFKHLSGVGAVwGPYGgSQRAARVWLNPDQMKALNIKAADVVATLSTYNATFTSGTIVG------KSRDFSINP 236
Cdd:PRK10555 159 ASNIQDPLSRVNGVGDI-DAYG-SQYSMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGtpsvdkQALNATINA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 237 LSQVENIEDIRDLVIRVD-NGKIIRMKDIANVVMGEENLrPSLLSIGGHQAMSLQILPLANANPVTVAQTIRAEIDRMQH 315
Cdd:PRK10555 237 QSLLQTPEQFRDITLRVNqDGSEVTLGDVATVELGAEKY-DYLSRFNGKPASGLGVKLASGANEMATAKLVLNRLDELAQ 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 316 QLPTGLKMQLVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLTI 395
Cdd:PRK10555 316 YFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 396 LAIILAIGLVVDDAIVVVENCYRHI-EKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLA 474
Cdd:PRK10555 396 FAMVLAIGLLVDDAIVVVENVERIMsEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIV 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 475 AAVIISGVVALTLSPMMSAYL---IQQSHKHP-----AWFQRVelgLERLIERYSQELELWFNRKRLLAGIALLLVVSGG 546
Cdd:PRK10555 476 SAMVLSVLVAMILTPALCATLlkpLKKGEHHGqkgffGWFNRM---FNRNAERYEKGVAKILHRSLRWILIYVLLLGGMV 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 547 VLYWYMPKVLLPTEDSGFIDASAKGPTGVGRQYHLN--HNAELNSVMDDNPNVAANLAYIEGGPVNH--------VLLKP 616
Cdd:PRK10555 553 FLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKvvEKVEKYYFTHEKDNVMSVFATVGSGPGGNgqnvarmfIRLKD 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 617 WGER---SDTAAEVIDQLIAKAKQQVSAYNMSFSVRSADGLNIPTNLQLQLmtldRDKDALAHTA-----EKVVKLLEDY 688
Cdd:PRK10555 633 WDERdskTGTSFAIIERATKAFNKIKEARVIASSPPAISGLGSSAGFDMEL----QDHAGAGHDAlmaarNQLLALAAKN 708
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 689 PGLTNINNSTLRDLPRFDLSIDRNAVILSGASYSDVTNALSTFLGSVKAADLhSDDGFTYPIQVQVN--LEMLGDfnVLS 766
Cdd:PRK10555 709 PELTRVRHNGLDDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDF-MDRGRVKKVYVQAAapYRMLPD--DIN 785
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 767 KLYVTSESGEALPLSQFVTIKQATAESNIKTFMGRDAALISADLMPGYSPGEiKLWLDEQLPSLLAPSQGYAYNGIIKEL 846
Cdd:PRK10555 786 LWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGT-AMDIMESLVKQLPNGFGLEWTAMSYQE 864
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 847 MDSQAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQIGLLTLVGLVTKHGILLV 926
Cdd:PRK10555 865 RLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIV 944
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 927 EFANKQRQAGKSALDAAMASARSRLRPILMTSLAMILSAIPLAIASGPGSLGRINIGLVLVGGLLMGTFFSLFVVPVAYL 1006
Cdd:PRK10555 945 EFANEMNQKGHDLFEATLHASRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATILAIFFVPLFFV 1024
|
|
| PRK09577 |
PRK09577 |
multidrug efflux RND transporter permease subunit; |
8-1011 |
1.31e-145 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169981 [Multi-domain] Cd Length: 1032 Bit Score: 461.24 E-value: 1.31e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 8 IRHPIFASVISIMIVLIGLVSFGKLPIQYFPDYNTHSASVSASINGASAEFMSENVA---DKLIDAASGLdkVDTMTTDC 84
Cdd:PRK09577 6 IDRPVFAWVISLFIMLGGIFAIRALPVAQYPDIAPPVVSIYATYPGASAQVVEESVTaliEREMNGAPGL--LYTSATSS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 85 QeGSCTLSINFSKEID-DIEYTNLMNKLRSsVEAindfpqsMIDKPRVTDDVSATHSASNI---ISFVNEGG-MTKQQMY 159
Cdd:PRK09577 84 A-GQASLSLTFKQGVNaDLAAVEVQNRLKT-VEA-------RLPEPVRRDGIQVEKAADNIqliVSLTSDDGrLTGVELG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 160 DYISQQLVPQFKHLSGVGAV--WGPyggsQRAARVWLNPDQMKALNIKAADVVATLSTYNATFTSGTI----VGKSRDFS 233
Cdd:PRK09577 155 EYASANVLQALRRVEGVGKVqfWGA----EYAMRIWPDPVKLAALGLTASDIASAVRAHNARVTIGDIgrsaVPDSAPIA 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 234 IN-----PLSQVENIEDIRdLVIRVDnGKIIRMKDIANVVMGEENLR-PSLLSIGGHQAMSLQILPLANAnpVTVAQTIR 307
Cdd:PRK09577 231 ATvfadaPLKTPEDFGAIA-LRARAD-GSALYLRDVARIEFGGNDYNyPSYVNGKTATGMGIKLAPGSNA--VATEKRVR 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 308 AEIDRMQHQLPTGLKMQLVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLG 387
Cdd:PRK09577 307 ATMDELSRYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQNFRATLIPTLVVPVALLGTFGVMLAAG 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 388 FSINVLTILAIILAIGLVVDDAIVVVENCYR-HIEKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLF 466
Cdd:PRK09577 387 FSINVLTMFGMVLAIGILVDDAIVVVENVERlMVEEGLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIY 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 467 RQFSFTLAAAVIISGVVALTLSPMMSAYL---IQQSHKHP----AWFQRVelgLERLIERYSQELELWFNRK-RLLAGIA 538
Cdd:PRK09577 467 RQFALSLAVSIGFSAFLALSLTPALCATLlkpVDGDHHEKrgffGWFNRF---VARSTQRYATRVGAILKRPlRWLVVYG 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 539 LLLVVSGgVLYWYMPKVLLPTEDSGFIDASAKGPTGVGRQYHLNHNAELNSVMDDNPNVAANLA------YIEG--GPVN 610
Cdd:PRK09577 544 ALTAAAA-LLFTRLPTAFLPDEDQGNFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVAYTFAlggfnlYGEGpnGGMI 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 611 HVLLKPWGERSDTAAEVidqliakaKQQVSAYNMSFSVR---SADGLNIPT----------NLQLQlmtlDR---DKDAL 674
Cdd:PRK09577 623 FVTLKDWKERKAARDHV--------QAIVARINERFAGTpntTVFAMNSPAlpdlgstsgfDFRLQ----DRgglGYAAF 690
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 675 AHTAEKVVKLLEDYPGLTNINNSTLRDLPRFDLSIDRNAVILSGASYSDVTNALSTFLGSVKAADlhsddgFTYPIQV-Q 753
Cdd:PRK09577 691 VAAREQLLAEGAKDPALTDLMFAGTQDAPQLKLDIDRAKASALGVSMDEINTTLAVMFGSDYIGD------FMHGSQVrR 764
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 754 VNLEMLG----DFNVLSKLYVTSESGEALPLSQFVTIKQATAESNIKTFMGRDAALISADLMPGYSPGEIKLWLdEQLPS 829
Cdd:PRK09577 765 VIVQADGrhrlDPDDVKKLRVRNAQGEMVPLAAFATLHWTLGPPQLTRYNGYPSFTINGSAAPGHSSGEAMAAI-ERIAA 843
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 830 LLAPSQGYAYNGIIKELMDSQAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQI 909
Cdd:PRK09577 844 TLPAGIGYAWSGQSFEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRGMPNDIYFKV 923
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 910 GLLTLVGLVTKHGILLVEFANKQRQAGKSALDAAMASARSRLRPILMTSLAMILSAIPLAIASGPGSLGRINIGLVLVGG 989
Cdd:PRK09577 924 GLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQIAIGTGVLGG 1003
|
1050 1060
....*....|....*....|..
gi 2178769604 990 LLMGTFFSLFVVPVAYLAMSQL 1011
Cdd:PRK09577 1004 VITATVLAVFLVPLFFVVVGRL 1025
|
|
| PRK10614 |
PRK10614 |
multidrug efflux system subunit MdtC; Provisional |
1-1014 |
1.77e-145 |
|
multidrug efflux system subunit MdtC; Provisional
Pssm-ID: 182589 [Multi-domain] Cd Length: 1025 Bit Score: 460.73 E-value: 1.77e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 1 MRLPEICIRHPIFASVISIMIVLIGLVSFGKLPIQYFPDYNTHSASVSASINGASAEFMSENVADKLIDAASGLDKVDTM 80
Cdd:PRK10614 1 MKFFALFIYRPVATILLSLAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVATPLERSLGRIAGVNEM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 81 TTDCQEGSC--TLSINFSKEIDdieytnlmNKLRSSVEAIND----FPQSMIDKPRVTDdVSATHSASNIISFVNEGgMT 154
Cdd:PRK10614 81 TSSSSLGSTriILQFDFDRDIN--------GAARDVQAAINAaqslLPSGMPSRPTYRK-ANPSDAPIMILTLTSDT-YS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 155 KQQMYDYISQQLVPQFKHLSGVGAVwGPYGGSQRAARVWLNPDQMKALNIKAADVVATLSTYNATFTSGTIVGKSRDFSI 234
Cdd:PRK10614 151 QGQLYDFASTQLAQTISQIDGVGDV-DVGGSSLPAVRVGLNPQALFNQGVSLDDVRQAISNANVRRPQGAVEDGTHRWQI 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 235 NPLSQVENIEDIRDLVIRVDNGKIIRMKDIANVVMGEENLRPSLLSiGGHQAMSLQILPLANANPVTVAQTIRAEIDRMQ 314
Cdd:PRK10614 230 QTNDELKTAAEYQPLIIHYNNGAAVRLGDVATVTDSVQDVRNAGMT-NAKPAILLMIRKLPEANIIQTVDRIRAKLPELR 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 315 HQLPTGLKMQLVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLT 394
Cdd:PRK10614 309 ETIPAAIDLQIAQDRSPTIRASLEEVEQTLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLS 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 395 ILAIILAIGLVVDDAIVVVENCYRHIEKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLA 474
Cdd:PRK10614 389 LMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLFREFAVTLS 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 475 AAVIISGVVALTLSPMMSAYLI----QQSHKHPAWFQRVELGLERlieRYSQELELWFNRKRlLAGIALLLVVSGGV-LY 549
Cdd:PRK10614 469 VAIGISLLVSLTLTPMMCAWLLksskPREQKRLRGFGRMLVALQQ---GYGRSLKWVLNHTR-WVGVVLLGTIALNVwLY 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 550 WYMPKVLLPTEDSGFIDASAKGPTGVGRQYHLNHNAELNSVMDDNPNVAANLAYIEGGPVNH----VLLKPWGERSDTAA 625
Cdd:PRK10614 545 ISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRVNSgmmfITLKPLSERSETAQ 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 626 EVIDQLIAKAKQQVSAYNMSFSVRSADGLNIPTNLQLQLMTLDRDKDALAHTAEKVVKLLEDYPGLTNINNSTLRDLPRF 705
Cdd:PRK10614 625 QVIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEM 704
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 706 DLSIDRNAVILSGASYSDVTNALSTFLGSVKAADLHSDDGfTYPIQVQVNLEMLGDFNVLSKLYVTSESGEALPLSQFVT 785
Cdd:PRK10614 705 ALTYDRDTMARLGIDVQAANSLLNNAFGQRQISTIYQPLN-QYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAK 783
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 786 IKQATAESNIKTFMGRDAALISADLMPGYSPGEIKLWLDEQLPSLLAPS--QGyAYNGIIKELMDSQAGTQSLFLLALVF 863
Cdd:PRK10614 784 WQPANAPLSVNHQGLSAASTISFNLPTGKSLSDASAAIERAMTQLGVPStvRG-SFAGTAQVFQETMNSQLILILAAIAT 862
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 864 IYLILAAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQIGLLTLVGLVTKHGILLVEFA-NKQRQAGKSALDA 942
Cdd:PRK10614 863 VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFAlEAQRNGNLTAQEA 942
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2178769604 943 AMASARSRLRPILMTSLAMILSAIPLAIASGPGSLGRINIGLVLVGGLLMGTFFSLFVVPVAYLAMSQLKQK 1014
Cdd:PRK10614 943 IFQACLLRFRPIMMTTLAALFGALPLVLSGGDGAELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLR 1014
|
|
| PRK15127 |
PRK15127 |
multidrug efflux RND transporter permease subunit AcrB; |
3-1006 |
3.31e-142 |
|
multidrug efflux RND transporter permease subunit AcrB;
Pssm-ID: 185081 [Multi-domain] Cd Length: 1049 Bit Score: 452.82 E-value: 3.31e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 3 LPEICIRHPIFASVISIMIVLIGLVSFGKLPIQYFPDYNTHSASVSASINGASAEFMSENVADKLIDAASGLDKVDTMTT 82
Cdd:PRK15127 1 MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 83 DCQE-GSCTLSINFSKEID-DIEYTNLMNKLRSSVEAIndfPQSMIDKprvtdDVSATHSASN---IISFVNE-GGMTKQ 156
Cdd:PRK15127 81 NSDStGTVQITLTFESGTDaDIAQVQVQNKLQLAMPLL---PQEVQQQ-----GVSVEKSSSSflmVVGVINTdGTMTQE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 157 QMYDYISQQLVPQFKHLSGVGAVwgPYGGSQRAARVWLNPDQMKALNIKAADVVATLSTYNATFTSGT------IVGKSR 230
Cdd:PRK15127 153 DISDYVAANMKDPISRTSGVGDV--QLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKAQNAQVAAGQlggtppVKGQQL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 231 DFSINPLSQVENIEDIRDLVIRVD-NGKIIRMKDIANVVMGEENLRpSLLSIGGHQAMSLQILPLANANPVTVAQTIRAE 309
Cdd:PRK15127 231 NASIIAQTRLTSTEEFGKILLKVNqDGSRVRLRDVAKIELGGENYD-IIAEFNGQPASGLGIKLATGANALDTAAAIRAE 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 310 IDRMQHQLPTGLKMQLVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFS 389
Cdd:PRK15127 310 LAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFS 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 390 INVLTILAIILAIGLVVDDAIVVVENCYR-HIEKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQ 468
Cdd:PRK15127 390 INTLTMFGMVLAIGLLVDDAIVVVENVERvMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 469 FSFTLAAAVIISGVVALTLSPMMSAYLIQQSHKHP---------AWFQRVelgLERLIERYSQEL-ELWFNRKRLLAgIA 538
Cdd:PRK15127 470 FSITIVSAMALSVLVALILTPALCATMLKPIAKGDhgegkkgffGWFNRM---FEKSTHHYTDSVgNILRSTGRYLV-LY 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 539 LLLVVSGGVLYWYMPKVLLPTEDSGFIDASAKGPTGVGRQ-----------YHLN-HNAELNSVMDDNPNVAANLAYIEG 606
Cdd:PRK15127 546 LIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLPAGATQErtqkvlnevtdYYLTkEKNNVESVFAVNGFGFAGRGQNTG 625
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 607 gpVNHVLLKPWGERSDTAAEViDQLIAKAKQQVS----AYNMSFSVRSADGLNIPTNLQLQLMtldrDKDALAHTA---- 678
Cdd:PRK15127 626 --IAFVSLKDWADRPGEENKV-EAITMRATRAFSqikdAMVFAFNLPAIVELGTATGFDFELI----DQAGLGHEKltqa 698
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 679 -EKVVKLLEDYPG-LTNINNSTLRDLPRFDLSIDRNAVILSGASYSDVTNALSTFLGSVKAADLhSDDGFTYPIQVQ--V 754
Cdd:PRK15127 699 rNQLLGEAAKHPDmLVGVRPNGLEDTPQFKIDIDQEKAQALGVSISDINTTLGAAWGGSYVNDF-IDRGRVKKVYVMseA 777
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 755 NLEMLGDfnVLSKLYVTSESGEALPLSQFVTIKQATAESNIKTFMGRDAALISADLMPGYSPGEiKLWLDEQLPSLLAPS 834
Cdd:PRK15127 778 KYRMLPD--DIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGE-AMELMEELASKLPTG 854
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 835 QGYAYNGIIKELMDSQAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQIGLLTL 914
Cdd:PRK15127 855 VGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTT 934
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 915 VGLVTKHGILLVEFANK-QRQAGKSALDAAMASARSRLRPILMTSLAMILSAIPLAIASGPGSLGRINIGLVLVGGLLMG 993
Cdd:PRK15127 935 IGLSAKNAILIVEFAKDlMDKEGKGLIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTA 1014
|
1050
....*....|...
gi 2178769604 994 TFFSLFVVPVAYL 1006
Cdd:PRK15127 1015 TVLAIFFVPVFFV 1027
|
|
| PRK10503 |
PRK10503 |
MdtB/MuxB family multidrug efflux RND transporter permease subunit; |
8-1011 |
2.39e-122 |
|
MdtB/MuxB family multidrug efflux RND transporter permease subunit;
Pssm-ID: 182501 [Multi-domain] Cd Length: 1040 Bit Score: 399.49 E-value: 2.39e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 8 IRHPIFASVISIMIVLIGLVSFGKLPIQYFPDYNTHSASVSASINGASAEFMSENVADKL---IDAASGLDKvdtMTTDC 84
Cdd:PRK10503 17 ILRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLerqFGQMSGLKQ---MSSQS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 85 QEGSCTLSINFSKEID-DIEYTNLMNKLRSSVEAI-NDFPQSMI-------DKPRVTDDVSAThsasniisfvnegGMTK 155
Cdd:PRK10503 94 SGGASVITLQFQLTLPlDVAEQEVQAAINAATNLLpSDLPNPPVyskvnpaDPPIMTLAVTST-------------AMPM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 156 QQMYDYISQQLVPQFKHLSGVGAVwgPYGGSQR-AARVWLNPDQMKALNIKAADVVATLSTYNATFTSGTIVGKSRDFSI 234
Cdd:PRK10503 161 TQVEDMVETRVAQKISQVSGVGLV--TLSGGQRpAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPTRAVTL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 235 NPLSQVENIEDIRDLVIRVDNGKIIRMKDIANVVMGEENLRPSLLSiGGHQAMSLQILPLANANPVTVAQTIRAEIDRMQ 314
Cdd:PRK10503 239 SANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAWA-NKQQAIVMNVQRQPGANIIATADSIRQMLPQLT 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 315 HQLPTGLKMQLVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLT 394
Cdd:PRK10503 318 ESLPKSVKVTVLSDRTTNIRASVDDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 395 ILAIILAIGLVVDDAIVVVENCYRHIEKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLA 474
Cdd:PRK10503 398 LMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLA 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 475 AAVIISGVVALTLSPMMSAYLI-QQSHKHPAWFQRV-ELGLERLIERYSQELELWFNRKRLLAGIALLLVVSGGVLYWYM 552
Cdd:PRK10503 478 VAILISAVVSLTLTPMMCARMLsQESLRKQNRFSRAsERMFDRVIAAYGRGLAKVLNHPWLTLSVALSTLLLTVLLWIFI 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 553 PKVLLPTEDSGFIDASAKGPTGVGRQYHLNHNAELNSVMDDNPNVAANLAYIEGGPVNHVL--------LKPWGERSDTA 624
Cdd:PRK10503 558 PKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLnsarlqinLKPLDERDDRV 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 625 AEVIDQLiakaKQQVSAY-NMSFSVRSADGLNIPTNLQ-------LQLMTLdrdkDALAHTAEKVVKLLEDYPGLTNINN 696
Cdd:PRK10503 638 QKVIARL----QTAVAKVpGVDLYLQPTQDLTIDTQVSrtqyqftLQATSL----DALSTWVPKLMEKLQQLPQLSDVSS 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 697 STLRDLPRFDLSIDRNAVILSGASYSDVTNALSTFLGSVKAADLhsddgFTYPIQVQVNLEMLGD----FNVLSKLYVTS 772
Cdd:PRK10503 710 DWQDKGLVAYVNVDRDSASRLGISMADVDNALYNAFGQRLISTI-----YTQANQYRVVLEHNTEntpgLAALDTIRLTS 784
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 773 ESGEALPLSQFVTIKQATAESNIKTFMGRDAALISADLMPGYSPGEIKLWLDEQLPSLLAPSQ-GYAYNGIIKELMDSQA 851
Cdd:PRK10503 785 SDGGVVPLSSIATIEQRFGPLSINHLDQFPSTTISFNVPDGYSLGDAVQAIMDTEKTLNLPADiTTQFQGSTLAFQSALG 864
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 852 GTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQIGLLTLVGLVTKHGILLVEFA-N 930
Cdd:PRK10503 865 STVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFAlA 944
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 931 KQRQAGKSALDAAMASARSRLRPILMTSLAMILSAIPLAIASGPGSLGRINIGLVLVGGLLMGTFFSLFVVPVAYLAMSQ 1010
Cdd:PRK10503 945 AEREQGMSPRDAIYQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGICMVGGLIVSQVLTLFTTPVIYLLFDR 1024
|
.
gi 2178769604 1011 L 1011
Cdd:PRK10503 1025 L 1025
|
|
| CusA |
COG3696 |
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism]; |
166-1008 |
1.22e-120 |
|
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism];
Pssm-ID: 442911 [Multi-domain] Cd Length: 1031 Bit Score: 394.40 E-value: 1.22e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 166 LVPQFKHLSGVGAVwGPYGGSQRAARVWLNPDQMKALNIKAADVVATLSTYNATFTSGTIVGKSRDFSINPLSQVENIED 245
Cdd:COG3696 164 IRPQLRSVPGVAEV-NSFGGFVKQYQVLVDPAKLRAYGLTLDDVIEALERNNANVGGGYIERGGQEYLVRGIGLIRSLED 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 246 IRDLVIRVDNGKIIRMKDIANVVMGEEnLRPSLLSIGGHQ-AMSLQILPLANANPVTVAQTIRAEIDRMQHQLPTGLKMQ 324
Cdd:COG3696 243 IENIVVKTRNGTPVLLRDVAEVRIGPA-PRRGAATLNGEGeVVGGIVLMLKGENALEVIEAVKAKLAELKPSLPEGVKIV 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 325 LVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLTILAIILAIGL 404
Cdd:COG3696 322 PFYDRSDLIDRAIHTVTKNLLEGALLVILVLFLFLGNLRAALIVALAIPLSLLFAFIVMRLFGISANLMSLGGLAIDFGI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 405 VVDDAIVVVENCYRHIEK------GETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVI 478
Cdd:COG3696 402 IVDGAVVMVENILRRLEEnraagtPRERLEVVLEAAREVRRPIFFATLIIILVFLPIFTLEGVEGKLFRPMALTVIFALL 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 479 ISGVVALTLSPMMSAYLI--QQSHKHPAWfqrvelgLERLIERYSQELELWFNRKRLLAGIALLLVVSGGVLYWYMPKVL 556
Cdd:COG3696 482 GALLLSLTLVPVLASLLLrgKVPEKENPL-------VRWLKRLYRPLLRWALRHPKLVLAVALVLLVLALALFPRLGSEF 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 557 LPTEDSGFIDASAKGPTGVGRQYHLNHNAELNSVMDDNPNVA--------ANLAyIEGGPVNH----VLLKP---WGERS 621
Cdd:COG3696 555 LPELDEGDLLVMATLPPGISLEESVELGQQVERILKSFPEVEsvvsrtgrAEDA-TDPMGVNMsetfVILKPrseWRSGR 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 622 DTaaeviDQLIAKAKQQVSAY---NMSFS-------------VRSADGLNI--PtnlqlqlmtldrDKDALAHTAEKVVK 683
Cdd:COG3696 634 TK-----EELIAEMREALEQIpgvNFNFSqpiqmrvdellsgVRADVAVKIfgD------------DLDVLRRLAEQIEA 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 684 LLEDYPGLTNINNSTLRDLPRFDLSIDRNAVILSGASYSDVTNALSTFLGSVKAADLHsDDGFTYPIQVQVNLEMLGDFN 763
Cdd:COG3696 697 VLKTVPGAADVQVERVTGLPQLDIRIDRDAAARYGLNVADVQDVVETAIGGKAVGQVY-EGERRFDIVVRLPEELRDDPE 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 764 VLSKLYVTSESGEALPLSQFVTIKQATAESNIKTFMGRDAALISADLMpGYSPG----EIKLWLDEQLPslLAPsqGY-- 837
Cdd:COG3696 776 AIRNLPIPTPSGAQVPLSQVADIEVVEGPNQISRENGRRRIVVQANVR-GRDLGsfvaEAQAKVAEQVK--LPP--GYyi 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 838 AYNGIIKELmdsQAGTQSLFL---LALVFIYLILAAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQIGLLTL 914
Cdd:COG3696 851 EWGGQFENL---QRATARLAIvvpLALLLIFLLLYLAFGSVRDALLILLNVPFALIGGVLALWLRGMPLSVSAGVGFIAL 927
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 915 VGLVTKHGILLVEFANKQRQAGKSALDAAMASARSRLRPILMTSLAMILSAIPLAIASGPGS--LGRINIglVLVGGLLM 992
Cdd:COG3696 928 FGVAVLNGVVLVSYINQLRAEGLDLREAIIEGALERLRPVLMTALVAALGLLPMALSTGPGSevQRPLAT--VVIGGLIT 1005
|
890
....*....|....*.
gi 2178769604 993 GTFFSLFVVPVAYLAM 1008
Cdd:COG3696 1006 STLLTLLVLPALYLLF 1021
|
|
| 2A0601 |
TIGR00914 |
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation ... |
8-1005 |
4.54e-84 |
|
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 129992 [Multi-domain] Cd Length: 1051 Bit Score: 294.36 E-value: 4.54e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 8 IRHPIFASVISIMIVLIGLVSFGKLPIQYFPDYNTHSASVSASINGASAEFMSENVADKLIDAASGLDKVDTMTTDCQEG 87
Cdd:TIGR00914 10 VAQRWLVLLATLVMAILGIWSYNRLPIDAVPDITNVQVQINTSAPGYSPLEVEQRVTYPIETAMAGLPGLETTRSLSRYG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 88 SCTLSINFsKEIDDIEYtnlmnkLRSSV-EAINDFpqsmidKPRVTDDVSATHSASN-------IISFVNEGGMTKQQ-- 157
Cdd:TIGR00914 90 LSQVTVIF-KDGTDLYF------ARQLVnERLQQA------RDNLPEGVSPEMGPIStglgeifLYTVEAEEGARKKDgg 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 158 ---------MYDYIsqqLVPQFKHLSGVGAVwGPYGGSQRAARVWLNPDQMKALNIKAADVVATLSTYNATFTSGTIVGK 228
Cdd:TIGR00914 157 aytltdlrtIQDWI---IRPQLRTVPGVAEV-NSIGGYVKQFLVAPDPEKLAAYGLSLADVVNALERNNQNVGAGYIERR 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 229 SRDFSINPLSQVENIEDIRDLVIRVDNGKIIRMKDIANVVMGEEnLRPSLLSIGGHQAMSLQILPLANANPVTVAQTIRA 308
Cdd:TIGR00914 233 GEQYLVRAPGQVQSMDDIRNIVIATGEGVPIRIRDVARVQIGKE-LRTGAATENGKEVVLGTVFMLIGENSRTVAQAVGD 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 309 EIDRMQHQLPTGLKMQLVYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGF 388
Cdd:TIGR00914 312 KLETINKTLPEGVEIVTTYDRSQLVDAAIATVKKNLLEGALLVIVILFLFLGNIRAALIAATVIPLSLLITFIGMVFQGI 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 389 SINVLTILAiiLAIGLVVDDAIVVVENCYRHIEKG----------ETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLM 458
Cdd:TIGR00914 392 SANLMSLGA--LDFGLIVDGAVVIVENAHRRLAEAqhhhgrqltlKERLHEVFAASREVRRPLIFGQLIITLVFLPIFTL 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 459 SGLTADLFRQFSFTLAAAVIISGVVALTLSPMMSAYLIQQshKHPAWFQRVelgLERLIERYSQELELWFNRKRLLAGIA 538
Cdd:TIGR00914 470 TGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRG--KVAEKENRL---MRVLKRRYEPLLERVLAWPAVVLGAA 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 539 LLLVVSGGVLYWYMPKVLLPTEDSGFIDASAKGPTGVGrqyhLNHNAELNSVMDDN----PNVA-----ANLAYIEGGPV 609
Cdd:TIGR00914 545 AVSIVLVVWIASRVGGEFIPSLNEGDLAYQALRIPGTS----LAQSVAMQQTLEKLiksfPEVArvfakTGTAEIATDPM 620
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 610 ------NHVLLKP---WGERSDTAAEVIDQLIAKAKQQVSAYN-------MSFS-----VRSADGLNIptnlqlqlmtLD 668
Cdd:TIGR00914 621 ppnasdTYIILKPesqWPEGKKTKEDLIEEIQEATVRIPGNNYeftqpiqMRFNelisgVRSDVAVKV----------FG 690
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 669 RDKDALAHTAEKVVKLLEDYPGLTNINNSTLRDLPRFDLSIDRNAVILSGASYSDVTNALSTFLGSVKAADLHSDDGfTY 748
Cdd:TIGR00914 691 DDLDDLDATAEKISAVLKGVPGAADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQDTVATAVGGRMSGETFEGDR-RF 769
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 749 PIQVQVNLEMLGDFNVLSKLYVTSESGEA-----LPLSQFVTIKQATAESNIKTFMGRDAALISADL----MPGYSPgEI 819
Cdd:TIGR00914 770 DIVIRLPESLRESPQALRQLPIPLPLSEDarkqfIPLSDVADLRVSPGPNQISRENGKRRVVVSANVrgrdLGSFVD-DA 848
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 820 KLWLDEQLPslLAPSQGYAYNGIIKELmdsQAGTQSLFL---LALVFIYLILAAQFESFVDPLIILLTVPLCLVGALLTL 896
Cdd:TIGR00914 849 KKAIAEQVK--LPPGYWITWGGQFEQL---QSATKRLQIvvpVTLLLIFVLLYAAFGNVKDALLVFTGIPFALTGGVFAL 923
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 897 NLFGQSMNIYSQIGLLTLVGLVTKHGILLVEFANKQRQAGKSALDAAMASARSRLRPILMTSLAMILSAIPLAIASGPGS 976
Cdd:TIGR00914 924 WLRGIPLSISAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEGALTRVRPVLMTALVASLGFVPMAIATGTGA 1003
|
1050 1060
....*....|....*....|....*....
gi 2178769604 977 LGRINIGLVLVGGLLMGTFFSLFVVPVAY 1005
Cdd:TIGR00914 1004 EVQRPLATVVIGGIITATLLTLFVLPALY 1032
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
261-1014 |
3.92e-27 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 118.81 E-value: 3.92e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 261 MKDIANVVMGEENLRPSLLSIGGHQAM---SLQILPLANANPVT-VAQTIRAEIDRMQhqlPTGLKMQL---VYNQADFI 333
Cdd:COG1033 137 LAELREKVLSSPLYVGRLVSPDGKATLivvTLDPDPLSSDLDRKeVVAEIRAIIAKYE---DPGVEVYLtgfPVLRGDIA 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 334 QASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLTILAIILAIGLVVDDAIVVV 413
Cdd:COG1033 214 EAIQSDLAIFFPLALLLILLLLFLFFRSLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSPLTILVPPLLLAIGIDYGIHLL 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 414 ENCYRHIEKGETPFNAAIKGSQEIIFPIIAMTLTLAavylpIGLMSGLTADL--FRQFSFTLAAAVIISGVVALTLSPMM 491
Cdd:COG1033 294 NRYREERRKGLDKREALREALRKLGPPVLLTSLTTA-----IGFLSLLFSDIppIRDFGIVAAIGVLLAFLTSLTLLPAL 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 492 SAYL-----IQQSHKHPAWFQRVELGLERLIERYsqelelwfnRKRLLAGIALLLVVSGgvlyWYMPKVLLPTEDSGFID 566
Cdd:COG1033 369 LSLLprpkpKTRRLKKPPELGRLLAKLARFVLRR---------PKVILVVALVLAVVSL----YGISRLKVEYDFEDYLP 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 567 ASAkgptgvgrqyhlnhnaelnsvmddnpnvaanlayieggPVNhvllkpwgersdTAAEVIDQLIAkakqqvSAYNMSF 646
Cdd:COG1033 436 EDS--------------------------------------PIR------------QDLDFIEENFG------GSDPLEV 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 647 SVRSADGLNIptnlqlqlmtldRDKDALAhTAEKVVKLLEDYPGLTNinnstlrdlprfdlsidrnavilsgasysdvTN 726
Cdd:COG1033 460 VVDTGEPDGL------------KDPEVLK-EIDRLQDYLESLPEVGK-------------------------------VL 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 727 ALSTFLGSVKAAdLHSDDGFTYPIQvqvnlemlGDFNVLSKLYVTSESGEALPLSQFVTIKQATAesNIKTFMGRDAALI 806
Cdd:COG1033 496 SLADLVKELNQA-LNEGDPKYYALP--------ESRELLAQLLLLLSSPPGDDLSRFVDEDYSAA--RVTVRLKDLDSEE 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 807 SADLMpgyspGEIKLWLDEQLP----SLLAPSQGYAYNGIIKELMDSQagTQSLfLLALVFIYLILAAQFESFVDPLIIL 882
Cdd:COG1033 565 IKALV-----EEVRAFLAENFPpdgvEVTLTGSAVLFAAINESVIESQ--IRSL-LLALLLIFLLLLLAFRSLRLGLISL 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 883 LTVPLCLVGALLTLNLFGQSMNIYSqIGLLTL-VGLVTKHGILLVEFANKQRQAGKSALDAAMASARSRLRPILMTSLAM 961
Cdd:COG1033 637 IPNLLPILLTFGLMGLLGIPLNIAT-AVVASIaLGIGVDYTIHFLSRYREERRKGGDLEEAIRRALRTTGKAILFTSLTL 715
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 2178769604 962 ILSAIPLAIASGPGSlgrINIGLVLVGGLLMGTFFSLFVVPVAYLAMSQLKQK 1014
Cdd:COG1033 716 AAGFGVLLFSSFPPL---ADFGLLLALGLLVALLAALLLLPALLLLLDPRIAK 765
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
236-489 |
1.53e-12 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 71.72 E-value: 1.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 236 PLSQVENIEDIRDLVirvdnGKIIRMKDIANVVMGEENLRPSLLSIGGHQAMSlqILPLANANPVTVAQTIRAEIDRMQH 315
Cdd:COG2409 71 TLTDPAFRAAVAALV-----ARLRADPGVAGVQDPWDDPAAGLVSEDGKAALV--TVTLDGDAGDEAAEAVDALRDAVAA 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 316 QLPTGLKMQL---VYNQADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINV 392
Cdd:COG2409 144 APAPGLTVYVtgpAALAADLNEAFEEDLGRAELITLPVALVVLLLVFRSLVAALLPLLTAGLAVGVALGLLALLAAFTDV 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 393 ---LTILAIILAIGLVVDDAIVVVeNCYRH-IEKGETPFNA---AIKGSQEIIFP-----IIAMtLTLAAVYLPIglmsg 460
Cdd:COG2409 224 ssfAPNLLTMLGLGVGIDYALFLV-SRYREeLRAGEDREEAvarAVATAGRAVLFsgltvAIAL-LGLLLAGLPF----- 296
|
250 260
....*....|....*....|....*....
gi 2178769604 461 ltadlFRQFSFTLAAAVIISGVVALTLSP 489
Cdd:COG2409 297 -----LRSMGPAAAIGVAVAVLAALTLLP 320
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
330-548 |
4.73e-08 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 57.16 E-value: 4.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 330 ADFIQASIEEGFSTLLEAIVLVSLIVVLFLGslRAASIPIITIPVCVIGVFAVMAWLGFSINVLTILAIILAIGLVVDDA 409
Cdd:PRK13024 258 PTLGQDAIDAGIIAGIIGFALIFLFMLVYYG--LPGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDAN 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 410 IVVVENCYRHIEKGETPFNAAIKGSQEIIFPII--AMTLTLAAVYL------PIglmsgltadlfRQFSFTLAAAVIISG 481
Cdd:PRK13024 336 VLIFERIKEELRKGKSLKKAFKKGFKNAFSTILdsNITTLIAAAILfffgtgPV-----------KGFATTLIIGILASL 404
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2178769604 482 VVALTLSPMMSAYLIQQSHKHPAWFQRVELGLERLIERYSQELELWF--NRKRLLAGIALLLVVSGGVL 548
Cdd:PRK13024 405 FTAVFLTRLLLELLVKRGDKKPFLFGVKKKKIHNINEGVTIFDRIDFvkKRKWFLIFSIVLVIAGIIIF 473
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
300-549 |
1.02e-06 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 52.92 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 300 VTVAQTIRAEIDRMQhqLPTGLKMQLVYNQAdfIQASIEEGF-----STLLEAIVLVSLIVVLFLGSLRAASIPIITIPV 374
Cdd:TIGR00921 154 VPIYNDVERSLERTN--PPSGKFLDVTGSPA--INYDIEREFgkdmgTTMAISGILVVLVLLLDFKRWWRPLLPLVIILF 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 375 CVIGVFAVMAWLGFSINVLTILAIILAIGLVVDDAIVVVENCYRHIEKGETPFNAAIKGSQEiifpiIAMTLTLAAVYLP 454
Cdd:TIGR00921 230 GVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRR-----TGRAVLIALLTTS 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 455 IGLMSGLTADL--FRQFSFTLAAAVIISGVVALTLSPMMsAYLIqqshkhPAWFQRVELGLERLIERYSQ-ELELW---- 527
Cdd:TIGR00921 305 AGFAALALSEFpmVSEFGLGLVAGLITAYLLTLLVLPAL-LQSI------DIGREKVKKEIIAIGGKSSEiEEELSkvls 377
|
250 260
....*....|....*....|..
gi 2178769604 528 FNRKRLLAGIALLLVVSGGVLY 549
Cdd:TIGR00921 378 ITVRHPVPALVAALIITGLGLY 399
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
321-488 |
4.64e-06 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 49.98 E-value: 4.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 321 LKMQLVYNQ---ADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSlrAASIPIITIPVCVIGVFAVMAWLGFSINVLTILA 397
Cdd:TIGR01129 228 APLQILEERtigPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL--FGLIAAIALVINIVLILAILSAFGATLTLPGIAG 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 398 IILAIGLVVDDAIVVVENCYRHIEKGETP---FNAAIKGSQEIIFPIIAMTLTLAAV--YLPIGLMSGltadlfrqFSFT 472
Cdd:TIGR01129 306 LILTIGMAVDANVLIYERIKEELRLGKSVrqaIEAGFERAFSTIFDANITTLIAALIlyVFGTGPVKG--------FAVT 377
|
170
....*....|....*.
gi 2178769604 473 LAAAVIISGVVALTLS 488
Cdd:TIGR01129 378 LAIGIIASLFTALVFT 393
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
330-495 |
4.84e-06 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 49.98 E-value: 4.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 330 ADFIQASIEEGFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCV------IGVFAVMAWLGFSINVLTILAIILaIG 403
Cdd:pfam03176 134 ADLRDAGDRDLGLIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLgaaqglVAILAHILGIGLSTFALNLLVVLL-IA 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 404 LVVDDAIVVVENCYRHIEKGETPFNAAIKGsqeiiFPIIAMTLTLAAVYLPIGLMSGLTADL--FRQFSFTLAAAVIISG 481
Cdd:pfam03176 213 VGTDYALFLVSRYREELRAGEDREEAVIRA-----VRGTGKVVTAAGLTVAIAMLALSFARLpvFAQVGPTIAIGVLVDV 287
|
170
....*....|....
gi 2178769604 482 VVALTLSPMMSAYL 495
Cdd:pfam03176 288 LAALTLLPALLALL 301
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
336-485 |
1.13e-05 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 47.25 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 336 SIEEGFSTLLEAIVLVSLIVVLFLGSLRA-ASIPIITIPVCVIgvFAVMAWLGFSINVLTILAIILAIGLVVDDAIVVVE 414
Cdd:TIGR00916 45 LIKAGIIALLIGLVLVLLYMLLRYEWRGAiAAIAALVHDVILI--LGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVIFD 122
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2178769604 415 NCYRHIEKGET-PFNAAIKGSQEIIFPIIAMT-----LTLAAVYLpiglmsgLTADLFRQFSFTLAAAVIISGVVAL 485
Cdd:TIGR00916 123 RIREELRKYKGrTFREAINLGINQTLSRIIDTnvttlLAVLALYV-------FGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
856-1002 |
5.76e-05 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 47.15 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 856 LFLLALVFIYLILAAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQIGLLTLVGLVTKHGILLVEfankqrqa 935
Cdd:COG4258 644 LLLLALLLILLLLLLRLRSLRRALRVLLPPLLAVLLTLAILGLLGIPLNLFHLIALLLVLGIGIDYALFFTE-------- 715
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2178769604 936 gksALDAAMASARSRLRPIL--MTSLA----MILSAIPlAIASgpgslgrinIGLVLVGGLLMGTFFSLFVVP 1002
Cdd:COG4258 716 ---GLLDKGELARTLLSILLaaLTTLLgfglLAFSSTP-ALRS---------FGLTVLLGILLALLLAPLLAP 775
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
334-502 |
5.98e-05 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 47.02 E-value: 5.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 334 QASIEEGFSTLLEAIVLVSLIVVLFLGSLraASIPIITIPVCVIGVFAVMAWLGFSINVLTILAIILAIGLVVDDAIVVV 413
Cdd:PRK14726 368 ADSIAAGLVAGLIAAILVAALMIGFYGFL--GVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIY 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 414 ENCYRHIEKGETPFNAAIKGSQEIIFPIIAMTLT--LAAVYLpIGLMSGltadLFRQFSFTLAAAVIISGVVALTLSPMM 491
Cdd:PRK14726 446 ERIREEEKTGHSLIQALDRGFSRALATIVDANVTilIAAVIL-FFLGSG----AVRGFAVTLAVGILTTVFTAFTLTRSL 520
|
170
....*....|.
gi 2178769604 492 SAYLIQQSHKH 502
Cdd:PRK14726 521 VAVWLRRRRPK 531
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
245-489 |
1.31e-04 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 46.12 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 245 DIRDLviRVDNGKIIRMKDianvVMGEENLRPSLLSIGGHQAMSLQILPLANANPVTVAQTIRAEIDRMQHQLPTGLKMQ 324
Cdd:TIGR00833 83 LIAKL--RADIMHVISVVD----FWGPPEAAEGLRSDDGKATIIIVNLAGEKGQKEAQEAINAVRRIVEQTNAPDGLTVH 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 325 LVYNQAdfIQASIEEGFSTLLEAIVLVSLIVVL-----FLGSLRAASIPIITIPVCVIGVFAVMAWLG----FSINVLTI 395
Cdd:TIGR00833 157 VTGPLA--TIADILESGDKDMNRITATTGIIVLiilllVYRSPITMLVPLVSVGFSVVVAQGIVSLLGipglIGVNAQTT 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 396 -LAIILAIGLVVDDAIVVVENCYRHIEKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLpigLMSGLTADLFRQFSFTLA 474
Cdd:TIGR00833 235 vLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTVAVAFL---ALSLARLPSFKTLGVSCA 311
|
250
....*....|....*
gi 2178769604 475 AAVIISGVVALTLSP 489
Cdd:TIGR00833 312 VGVLVALLNAVTLTP 326
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
305-548 |
2.72e-04 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 44.99 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 305 TIRAEIDRMQHQLPTGLKMQLVYNQAdfiqASIEEgFSTLLEAIVLVSLI------VVLFLGsLRAASIpIITIPVC-VI 377
Cdd:TIGR03480 233 AIRAAAKDLRLDEDHGVTVRLTGEVA----LSDEE-LATVSEGATVAGLLsfvlvlVLLWLA-LRSPRL-VFAVLVTlIV 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 378 GVFAVMAWLGFSINVLTILAI---ILAIGLVVDDAIVVVENCYRHIEKGETPFNAAIKGSQEIIFPIIAMTLTLAA---V 451
Cdd:TIGR03480 306 GLILTAAFATLAVGHLNLISVafaVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAgffA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 452 YLP--------IGLMSGLtadlfrqfsftlaaAVIISGVVALTLSPMMSAYLIQQSHKHPAWFQRVElGLERLIERYSqe 523
Cdd:TIGR03480 386 FLPtdykgvseLGIIAGT--------------GMFIALFVTLTVLPALLRLLRPPRRRKPPGYATLA-PLDAFLRRHR-- 448
|
250 260
....*....|....*....|....*
gi 2178769604 524 lelwfnrkRLLAGIALLLVVSGGVL 548
Cdd:TIGR03480 449 --------RPVLGVTLILGIAALAL 465
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
330-496 |
2.85e-04 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 44.72 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 330 ADFIQASIeegFSTLLeAIVLVSLIVVLFLGSLRAASiPIITIpVCVIGVFAVMAWLGFsinVLT---ILAIILAIGLVV 406
Cdd:COG0342 267 ADSIEKGL---IAGLI-GLLLVALFMLLYYRLPGLVA-NIALA-LNVVLLLGVLSLLGA---TLTlpgIAGIILTIGMAV 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 407 DDAIVVVENcYRH-IEKGETPFNAAIKGSQEIIFPIIA--MTLTLAAV---YLPIGLMSGltadlfrqFSFTLAAAVIIS 480
Cdd:COG0342 338 DANVLIFER-IREeLRAGRSLRAAIEAGFKRAFSTILDanVTTLIAAVvlfVLGTGPVKG--------FAVTLILGILIS 408
|
170
....*....|....*.
gi 2178769604 481 GVVALTLSPMMSAYLI 496
Cdd:COG0342 409 MFTAVPVTRPLLNLLL 424
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
858-1003 |
3.38e-04 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 44.44 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 858 LLALVFIyLILAAQFESFVDPLIILLTVPLCLVGALLTLNL---FGQSMNIYSQIGLLTLVGLVTKHGILLVEFANKQRQ 934
Cdd:TIGR00921 198 TMAISGI-LVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGImgwLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERD 276
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2178769604 935 AGKSALDAAMASARSRLRPILMTSLAMILSAIPLAIASGPgSLGRINIGLVLvgGLLMGTFFSLFVVPV 1003
Cdd:TIGR00921 277 IGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFP-MVSEFGLGLVA--GLITAYLLTLLVLPA 342
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
298-511 |
5.23e-04 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 44.22 E-value: 5.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 298 NPVTVAQTIRAEIDRMQHQLPTGLKMQLVYNQADFIQASIEEGFSTLLE--------------AIVLVSLIVVLFLGSLR 363
Cdd:PRK13023 216 NQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEertiasalgedyasAAVLAALLAALVVGLFM 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 364 AAS------IPIITIPVCVIGVFAVMAWLGFSINVLTILAIILAIGLVVDDAIVVVENCYRHIEKGETPFNAAIKGSQEI 437
Cdd:PRK13023 296 VLSygilgvIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRA 375
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2178769604 438 IFPIIAMTLTLAAVYLPIGLMSGLTAdlfRQFSFTLAAAVIISGVVALTLSPMMSAYLIQQSHKHPAWFQRVEL 511
Cdd:PRK13023 376 LSTIVDANLTTLIAALVLFLLGSGTV---HGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRLKL 446
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
348-506 |
5.49e-04 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 44.00 E-value: 5.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 348 IVLVSLIVVLFLGSLRAAsIPIITIPVCVIGVFAVMAWLGFSINVLTILAIILAIGLVVDDAIVVVENCYRHIEKG---- 423
Cdd:NF037998 454 LAIAIMIYLLFAYRLLGL-FAIIIALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNkrsi 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 424 ETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIGLMSgltadlFRQFSFTLAAAVIISGVVALTLSPMMSAYLI--QQSHK 501
Cdd:NF037998 533 EESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNS------IKSFATILLVGVIISLVLVIIVARLMIWLTIklQWFKK 606
|
....*
gi 2178769604 502 HPAWF 506
Cdd:NF037998 607 YPWLL 611
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
857-987 |
8.92e-04 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 43.45 E-value: 8.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 857 FLLALVFIYLILAAQFESFVDPLIILltVPLcLVGALLTLN---LFGQSMNIYSQIGLLTLVGLVTKHGILLVEfankqr 933
Cdd:TIGR03480 718 FIYALVAITVLLLLTLRRVRDVLLVL--APL-LLAGLLTVAamvLLGIPFNFANIIALPLLLGLGVDFGIYMVH------ 788
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2178769604 934 qAGKSALDAAMASARSRLRPILMTSLAMILSAIPLAIASGPG--SLGRI-NIGLVLV 987
Cdd:TIGR03480 789 -RWRNGVDSGNLLQSSTARAVFFSALTTATAFGSLAVSSHPGtaSMGILlSLGLGLT 844
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
344-419 |
1.21e-03 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 42.92 E-value: 1.21e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2178769604 344 LLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLTILAIILAIGLVVDDAIVVVENCYRH 419
Cdd:COG4258 645 LLLALLLILLLLLLRLRSLRRALRVLLPPLLAVLLTLAILGLLGIPLNLFHLIALLLVLGIGIDYALFFTEGLLDK 720
|
|
| CusA |
COG3696 |
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism]; |
879-1009 |
1.72e-03 |
|
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism];
Pssm-ID: 442911 [Multi-domain] Cd Length: 1031 Bit Score: 42.32 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 879 LIILLTVPLCLVGALLTLNLFGQSMNIYSqIGLLTL-VGLVTKHGILLVEFA------NKQRQAGKSALDAAMASARSRL 951
Cdd:COG3696 363 LIVALAIPLSLLFAFIVMRLFGISANLMS-LGGLAIdFGIIVDGAVVMVENIlrrleeNRAAGTPRERLEVVLEAAREVR 441
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2178769604 952 RPILmTSLAMI---------LSAI------PLAIAsgpgslgrinIGLVLVGGLLmgtfFSLFVVPV-AYLAMS 1009
Cdd:COG3696 442 RPIF-FATLIIilvflpiftLEGVegklfrPMALT----------VIFALLGALL----LSLTLVPVlASLLLR 500
|
|
| Patched |
pfam02460 |
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic ... |
325-451 |
2.01e-03 |
|
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog. This protein associates with the smoothened protein to transduce hedgehog signals.
Pssm-ID: 308203 [Multi-domain] Cd Length: 793 Bit Score: 41.96 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 325 LVYNQADFIQASIEE----GFSTLLEAIVLVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLTILAIIL 400
Cdd:pfam02460 622 TVFDEDAPFADQYLTilpsTIQNIVITLICMFIVCFLFIPNPPCVFVITLAIASIDIGVFGFLSLWGVDLDPISMITIIM 701
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2178769604 401 AIGLVVDDAIVVVENCYRhiEKGETPFNAAIKGSQEIIFPII-AMTLTLAAV 451
Cdd:pfam02460 702 SIGFSVDFSAHIAYHFVR--SRGDTPAERVVDALEALGWPVFqGGLSTILGV 751
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
858-1002 |
3.18e-03 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 41.29 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 858 LLALVFIYLILAAQFESFVDPLIILLTVPLCLVGALLTLNLFGQSMNIYSQ-IGLLTLVGL--VTKHGILLV----Efan 930
Cdd:COG2409 176 LITLPVALVVLLLVFRSLVAALLPLLTAGLAVGVALGLLALLAAFTDVSSFaPNLLTMLGLgvGIDYALFLVsryrE--- 252
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2178769604 931 kQRQAGKSALDAAMASARSRLRPILMTSLAMILSAIPLAIAsGPGSLGriNIGLVLVGGLLMGTFFSLFVVP 1002
Cdd:COG2409 253 -ELRAGEDREEAVARAVATAGRAVLFSGLTVAIALLGLLLA-GLPFLR--SMGPAAAIGVAVAVLAALTLLP 320
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
337-488 |
5.43e-03 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 39.13 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 337 IEEGFSTLLEAIVLVsLIVVLFLGSLRAASIPIITIPVCVIGVFAVMAWLGFSINVLTILAIILAIGLVVDDAIVVVENC 416
Cdd:pfam02355 30 ARKAVLALLFALLLI-LIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIGYSVNDTVVVFDRV 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2178769604 417 YRHIEKGET-PFNAAIKGSQEIIFP-IIAMTLTLAAVYLPIGLMSGltaDLFRQFSFTLaaaviISGVVALTLS 488
Cdd:pfam02355 109 RENLRKKTRaTLNEIMNLSINQTLTrTINTSLTTLLVVVALFVFGG---GSLKDFSLAL-----LVGVIVGTYS 174
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
237-489 |
7.13e-03 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 40.21 E-value: 7.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 237 LSQVENIEDIRDLVIRVdNGKIIRMKDIANVVMGEEnlRPSLLSiGGHQAMSLQILPLANANPVTVAQTIRAEIDRMQhq 316
Cdd:TIGR00921 469 AARVFGAPSIIDLVKEV-EGLPAPERSALEPIPEDE--EGGYIS-GGQIKVAVIQVQLKQGEPKVQGRKILRDVQHEH-- 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 317 LPTGLKMQLVYNQADFI----QASIEEGFSTLLEAIVLVSLIVVLFLgSLRAASIPIITIPVCVIGVFAVMAWLGFSINV 392
Cdd:TIGR00921 543 PPPGVKVGVTGLPVAFAemheLVNEGMRRMTIAGAILVLMILLAVFR-NPIKAVFPLIAIGSGILWAIGLMGLRGIPSFL 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178769604 393 LTILAIILAIGLVVDDAIVVVENcYRHIEKGETPFNAAIKGSQEIIFPIIAMTLTLAAVYLPIgLMSGLTAdlFRQFSFT 472
Cdd:TIGR00921 622 AMATTISIILGLGMDYSIHLAER-YFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSL-LLSHFPI--MRNFGLV 697
|
250
....*....|....*..
gi 2178769604 473 LAAAVIISGVVALTLSP 489
Cdd:TIGR00921 698 QGIGVLSSLTAALVVFP 714
|
|
| |
