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Conserved domains on  [gi|2182132935|ref|WP_235556865|]
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AraC family transcriptional regulator [Bordetella bronchiseptica]

Protein Classification

helix-turn-helix transcriptional regulator( domain architecture ID 11454547)

helix-turn-helix (HTH) transcriptional regulator containing an AraC family DNA-binding HTH domain controls the expression of genes with diverse biological functions including metabolism, stress response, and virulence

CATH:  1.10.10.1310
Gene Ontology:  GO:0003700|GO:0043565|GO:0006355
PubMed:  9409145|8831795|15808743|2644244
SCOP:  4000332

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
153-233 4.10e-16

helix_turn_helix, arabinose operon control protein;


:

Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 71.04  E-value: 4.10e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935  153 EAVCQRFALSRSTLFRLFKAHGG--FARYLKMRRMQQCFDLLtseRMRHDNVKAVYLSCGFDNAQQFSRVFSGVYGVAPS 230
Cdd:smart00342   5 EDLAEALGVSPRHLQRLFKKETGttPKQYLRDRRLERARRLL---RDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81


                   ...
gi 2182132935  231 VLR 233
Cdd:smart00342  82 EYR 84
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
6-239 1.89e-13

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


:

Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 67.88  E-value: 1.89e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935   6 AAIARDARRGALAVVLRAGDVRLAQDGGERAAAAAGDCLLLDLARPWRLDLSDDFAGYLAWTEGAGQPASAGTVAPGASV 85
Cdd:COG2207    25 LLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935  86 TAHRLAGMLPALVAGPLSATQLRGLHDTVAAALARADGAALGDGHCHPLAQIRAYIDACLHDQGFGYEAVCQRFALSRST 165
Cdd:COG2207   105 LLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRT 184

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2182132935 166 LFRLFKAHGG--FARYLKMRRMQQCFDLLTSERMrhdNVKAVYLSCGFDNAQQFSRVFSGVYGVAPSVLRQLTRQR 239
Cdd:COG2207   185 LSRLFKEETGtsPKQYLRELRLERAKRLLAETDL---SISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRKRLRAR 257
 
Name Accession Description Interval E-value
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
153-233 4.10e-16

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 71.04  E-value: 4.10e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935  153 EAVCQRFALSRSTLFRLFKAHGG--FARYLKMRRMQQCFDLLtseRMRHDNVKAVYLSCGFDNAQQFSRVFSGVYGVAPS 230
Cdd:smart00342   5 EDLAEALGVSPRHLQRLFKKETGttPKQYLRDRRLERARRLL---RDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81


                   ...
gi 2182132935  231 VLR 233
Cdd:smart00342  82 EYR 84
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
6-239 1.89e-13

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 67.88  E-value: 1.89e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935   6 AAIARDARRGALAVVLRAGDVRLAQDGGERAAAAAGDCLLLDLARPWRLDLSDDFAGYLAWTEGAGQPASAGTVAPGASV 85
Cdd:COG2207    25 LLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935  86 TAHRLAGMLPALVAGPLSATQLRGLHDTVAAALARADGAALGDGHCHPLAQIRAYIDACLHDQGFGYEAVCQRFALSRST 165
Cdd:COG2207   105 LLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRT 184

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2182132935 166 LFRLFKAHGG--FARYLKMRRMQQCFDLLTSERMrhdNVKAVYLSCGFDNAQQFSRVFSGVYGVAPSVLRQLTRQR 239
Cdd:COG2207   185 LSRLFKEETGtsPKQYLRELRLERAKRLLAETDL---SISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRKRLRAR 257
HTH_18 pfam12833
Helix-turn-helix domain;
155-234 1.04e-12

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 61.84  E-value: 1.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 155 VCQRFALSRSTLFRLFKAHGG--FARYLKMRRMQQCFDLLTseRMRHDNVKAVYLSCGFDNAQQFSRVFSGVYGVAPSVL 232
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGlsPKEYLRRLRLERARRLLL--EDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEY 78


                  ..
gi 2182132935 233 RQ 234
Cdd:pfam12833  79 RR 80
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 133-239 6.13e-08

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 52.47  E-value: 6.13e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 133 PLAQIRAYIDACLHDQgFGYEAVCQRFALSRSTLFRLFKAHGG--FARYLKMRRMQQCFDLLTSERMrhdNVKAVYLSCG 210
Cdd:COG4977   211 RLARAQAWMEANLEEP-LSVDELARRAGMSPRTLERRFRAATGttPARYLQRLRLERARRLLETTDL---SIEEIAAACG 286

                          90       100
                  ....*....|....*....|....*....
gi 2182132935 211 FDNAQQFSRVFSGVYGVAPSVLRQLTRQR 239
Cdd:COG4977   287 FGSASHFRRAFRRRFGVSPSAYRRRFRAR 315
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 1-234 3.31e-07

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 50.03  E-value: 3.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935   1 MAREPAAIARDARRGALAVVLRAGDVRLAQdGGERAAAAAGDCLLLDLARPWRL---DLSDDFAGYLAWTE-----GAGQ 72
Cdd:PRK09685   57 LSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ-DDRQVQLAAGDITLIDASRPCSIypqGLSEQISLLLPRELveqyfPGQK 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935  73 PASAGTVAPGASVT--AHRLagMLPALVAGPLSATQ-----------LR-GLHDTVAAalaradgaalGDGHCHPLAQIR 138
Cdd:PRK09685  136 PACAGRLSASLPMVqlSHRL--LQQSMNGPALSETEseallealialLRpALHQRESV----------QPRRERQFQKVV 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 139 AYIDACLHDQGFGYEAVCQRFALSRSTLFRLFKAHG-GFARYLKMRRMQQCFDLLTSERMRhDNVKAVYLSCGFDNAQQF 217
Cdd:PRK09685  204 ALIDQSIQEEILRPEWIAGELGISVRSLYRLFAEQGlVVAQYIRNRRLDRCADDLRPAADD-EKITSIAYKWGFSDSSHF 282

                         250
                  ....*....|....*..
gi 2182132935 218 SRVFSGVYGVAPSVLRQ 234
Cdd:PRK09685  283 STAFKQRFGVSPGEYRR 299
PRK13503 PRK13503
HTH-type transcriptional activator RhaS;
152-234 3.60e-07

HTH-type transcriptional activator RhaS;


Pssm-ID: 184094 [Multi-domain]  Cd Length: 278  Bit Score: 49.68  E-value: 3.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 152 YEAVCQRFALSRSTLFRLFKAHGGFA--RYLKMRRMQQCFDLLtseRMRHDNVKAVYLSCGFDNAQQFSRVFSGVYGVAP 229
Cdd:PRK13503  190 WEALADQFSLSLRTLHRQLKQQTGLTpqRYLNRLRLLKARHLL---RHSDASVTDIAYRCGFGDSNHFSTLFRREFSWSP 266


                  ....*
gi 2182132935 230 SVLRQ 234
Cdd:PRK13503  267 RDIRQ 271
 
Name Accession Description Interval E-value
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
153-233 4.10e-16

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 71.04  E-value: 4.10e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935  153 EAVCQRFALSRSTLFRLFKAHGG--FARYLKMRRMQQCFDLLtseRMRHDNVKAVYLSCGFDNAQQFSRVFSGVYGVAPS 230
Cdd:smart00342   5 EDLAEALGVSPRHLQRLFKKETGttPKQYLRDRRLERARRLL---RDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81


                   ...
gi 2182132935  231 VLR 233
Cdd:smart00342  82 EYR 84
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
6-239 1.89e-13

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 67.88  E-value: 1.89e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935   6 AAIARDARRGALAVVLRAGDVRLAQDGGERAAAAAGDCLLLDLARPWRLDLSDDFAGYLAWTEGAGQPASAGTVAPGASV 85
Cdd:COG2207    25 LLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935  86 TAHRLAGMLPALVAGPLSATQLRGLHDTVAAALARADGAALGDGHCHPLAQIRAYIDACLHDQGFGYEAVCQRFALSRST 165
Cdd:COG2207   105 LLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRT 184

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2182132935 166 LFRLFKAHGG--FARYLKMRRMQQCFDLLTSERMrhdNVKAVYLSCGFDNAQQFSRVFSGVYGVAPSVLRQLTRQR 239
Cdd:COG2207   185 LSRLFKEETGtsPKQYLRELRLERAKRLLAETDL---SISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRKRLRAR 257
HTH_18 pfam12833
Helix-turn-helix domain;
155-234 1.04e-12

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 61.84  E-value: 1.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 155 VCQRFALSRSTLFRLFKAHGG--FARYLKMRRMQQCFDLLTseRMRHDNVKAVYLSCGFDNAQQFSRVFSGVYGVAPSVL 232
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGlsPKEYLRRLRLERARRLLL--EDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEY 78


                  ..
gi 2182132935 233 RQ 234
Cdd:pfam12833  79 RR 80
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 133-239 6.13e-08

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 52.47  E-value: 6.13e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 133 PLAQIRAYIDACLHDQgFGYEAVCQRFALSRSTLFRLFKAHGG--FARYLKMRRMQQCFDLLTSERMrhdNVKAVYLSCG 210
Cdd:COG4977   211 RLARAQAWMEANLEEP-LSVDELARRAGMSPRTLERRFRAATGttPARYLQRLRLERARRLLETTDL---SIEEIAAACG 286

                          90       100
                  ....*....|....*....|....*....
gi 2182132935 211 FDNAQQFSRVFSGVYGVAPSVLRQLTRQR 239
Cdd:COG4977   287 FGSASHFRRAFRRRFGVSPSAYRRRFRAR 315
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 1-234 3.31e-07

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 50.03  E-value: 3.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935   1 MAREPAAIARDARRGALAVVLRAGDVRLAQdGGERAAAAAGDCLLLDLARPWRL---DLSDDFAGYLAWTE-----GAGQ 72
Cdd:PRK09685   57 LSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ-DDRQVQLAAGDITLIDASRPCSIypqGLSEQISLLLPRELveqyfPGQK 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935  73 PASAGTVAPGASVT--AHRLagMLPALVAGPLSATQ-----------LR-GLHDTVAAalaradgaalGDGHCHPLAQIR 138
Cdd:PRK09685  136 PACAGRLSASLPMVqlSHRL--LQQSMNGPALSETEseallealialLRpALHQRESV----------QPRRERQFQKVV 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 139 AYIDACLHDQGFGYEAVCQRFALSRSTLFRLFKAHG-GFARYLKMRRMQQCFDLLTSERMRhDNVKAVYLSCGFDNAQQF 217
Cdd:PRK09685  204 ALIDQSIQEEILRPEWIAGELGISVRSLYRLFAEQGlVVAQYIRNRRLDRCADDLRPAADD-EKITSIAYKWGFSDSSHF 282

                         250
                  ....*....|....*..
gi 2182132935 218 SRVFSGVYGVAPSVLRQ 234
Cdd:PRK09685  283 STAFKQRFGVSPGEYRR 299
PRK13503 PRK13503
HTH-type transcriptional activator RhaS;
152-234 3.60e-07

HTH-type transcriptional activator RhaS;


Pssm-ID: 184094 [Multi-domain]  Cd Length: 278  Bit Score: 49.68  E-value: 3.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 152 YEAVCQRFALSRSTLFRLFKAHGGFA--RYLKMRRMQQCFDLLtseRMRHDNVKAVYLSCGFDNAQQFSRVFSGVYGVAP 229
Cdd:PRK13503  190 WEALADQFSLSLRTLHRQLKQQTGLTpqRYLNRLRLLKARHLL---RHSDASVTDIAYRCGFGDSNHFSTLFRREFSWSP 266


                  ....*
gi 2182132935 230 SVLRQ 234
Cdd:PRK13503  267 RDIRQ 271
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 135-234 5.66e-07

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 49.67  E-value: 5.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 135 AQIRAYIDAClHDQGFGYEAVCQRFALSRSTLFRLFKAHGG--FARYLKMRRMQQCFDLLTSermrHDNVKAVYLSCGFD 212
Cdd:COG2169    87 ARACRLIEAG-AEDRPSLEDLAARLGLSPRHLRRLFKAHTGvtPKAYARARRLLRARQLLQT----GLSVTDAAYAAGFG 161

                          90       100
                  ....*....|....*....|..
gi 2182132935 213 NAQQFSRVFSGVYGVAPSVLRQ 234
Cdd:COG2169   162 SLSRFYEAFKKLLGMTPSAYRR 183
PRK13502 PRK13502
HTH-type transcriptional activator RhaR;
150-239 7.79e-06

HTH-type transcriptional activator RhaR;


Pssm-ID: 184093 [Multi-domain]  Cd Length: 282  Bit Score: 45.82  E-value: 7.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 150 FGYEAVCQRFALSRSTLFRLFKAHGGFA--RYLKMRRMQQCFDLLTSERMRhdnVKAVYLSCGFDNAQQFSRVFSGVYGV 227
Cdd:PRK13502  193 FALDAFCQQEQCSERVLRQQFRAQTGMTinQYLRQVRICHAQYLLQHSPLM---ISEISMQCGFEDSNYFSVVFTRETGM 269

                          90
                  ....*....|..
gi 2182132935 228 APSVLRQLTRQR 239
Cdd:PRK13502  270 TPSQWRHLSNQS 281
PRK13501 PRK13501
HTH-type transcriptional activator RhaR;
150-239 2.91e-05

HTH-type transcriptional activator RhaR;


Pssm-ID: 184092 [Multi-domain]  Cd Length: 290  Bit Score: 44.12  E-value: 2.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 150 FGYEAVCQRFALSRSTLFRLFKAHGGF--ARYLKMRRMQQCFDLLTSERMRHDNVKAvylSCGFDNAQQFSRVFSGVYGV 227
Cdd:PRK13501  193 FDMADFCHKNQLVERSLKQLFRQQTGMsiSHYLRQIRLCHAKCLLRGSEHRISDIAA---RCGFEDSNYFSAVFTREAGM 269

                          90
                  ....*....|..
gi 2182132935 228 APSVLRQLTRQR 239
Cdd:PRK13501  270 TPRDYRQRFIRS 281
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
140-234 1.29e-03

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 37.21  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 140 YIDACLhDQGFGYEAVCQRFALSRSTLFRLFKA--HGGFARYLKMRRMQQCFDLL-TSERMRHDnvkaVYLSCGFDNAQQ 216
Cdd:PRK10219   13 WIDEHI-DQPLNIDVVAKKSGYSKWYLQRMFRTvtHQTLGDYIRQRRLLLAAVELrTTERPIFD----IAMDLGYVSQQT 87

                          90
                  ....*....|....*...
gi 2182132935 217 FSRVFSGVYGVAPSVLRQ 234
Cdd:PRK10219   88 FSRVFRRQFDRTPSDYRH 105
PRK11511 PRK11511
MDR efflux pump AcrAB transcriptional activator MarA;
153-233 1.53e-03

MDR efflux pump AcrAB transcriptional activator MarA;


Pssm-ID: 236920 [Multi-domain]  Cd Length: 127  Bit Score: 37.77  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 153 EAVCQRFALSRSTLFRLFKAHGG--FARYLKMRRMQQcfdllTSERMRHDNVKAVYLS--CGFDNAQQFSRVFSGVYGVA 228
Cdd:PRK11511   29 EKVSERSGYSKWHLQRMFKKETGhsLGQYIRSRKMTE-----IAQKLKESNEPILYLAerYGFESQQTLTRTFKNYFDVP 103


                  ....*
gi 2182132935 229 PSVLR 233
Cdd:PRK11511  104 PHKYR 108
PRK13500 PRK13500
HTH-type transcriptional activator RhaR;
150-239 2.28e-03

HTH-type transcriptional activator RhaR;


Pssm-ID: 184091 [Multi-domain]  Cd Length: 312  Bit Score: 38.54  E-value: 2.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182132935 150 FGYEAVCQRFALSRSTLFRLFKAHGGFA--RYLKMRRMQQCFDLLTSERMRhdnVKAVYLSCGFDNAQQFSRVFSGVYGV 227
Cdd:PRK13500  223 FALDKFCDEASCSERVLRQQFRQQTGMTinQYLRQVRVCHAQYLLQHSRLL---ISDISTECGFEDSNYFSVVFTRETGM 299

                          90
                  ....*....|..
gi 2182132935 228 APSVLRQLTRQR 239
Cdd:PRK13500  300 TPSQWRHLNSQK 311
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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