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Conserved domains on  [gi|2182225615|ref|WP_235605956|]
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cytochrome c family protein [Rhodanobacter thiooxydans]

Protein Classification

c-type cytochrome( domain architecture ID 10007442)

c-type cytochrome is an electron carrier protein that contains one or more heme groups

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
204-297 4.03e-12

Cytochrome c2 [Energy production and conversion];


:

Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 61.44  E-value: 4.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 204 VAHGAQLVKdNGCVACHA--ADDKKLVGPGWGGLYNSKVSLADG---------STVTADDAYLRESILQPNAKiVAGYPt 272
Cdd:COG3474     3 AAAGEKLFN-RKCAACHSvdGGAGNRVGPNLNGVVGRKAGSVEGfaysdalkaSGLVWDEETLDAWLADPKAF-VPGTK- 79
                          90       100
                  ....*....|....*....|....*
gi 2182225615 273 gvMPaYGTLLKDDEVNAIVAYLHSL 297
Cdd:COG3474    80 --MP-FAGLKDPEDRADLIAYLKTL 101
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
36-153 2.26e-05

Cytochrome c2 [Energy production and conversion];


:

Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 42.56  E-value: 2.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615  36 AADGKRVFQAyNCMGCHTMVGNGAYL-GPDLT-----EEYKHAGPAWLAAFLPSAGGWpTTAAVRAQLQDPNqsadagtd 109
Cdd:COG3474     3 AAAGEKLFNR-KCAACHSVDGGAGNRvGPNLNgvvgrKAGSVEGFAYSDALKASGLVW-DEETLDAWLADPK-------- 72
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2182225615 110 sidaylKKFPGaaerierrgggtTMMPNLPLTK-DEIGQLIAYLK 153
Cdd:COG3474    73 ------AFVPG------------TKMPFAGLKDpEDRADLIAYLK 99
 
Name Accession Description Interval E-value
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
204-297 4.03e-12

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 61.44  E-value: 4.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 204 VAHGAQLVKdNGCVACHA--ADDKKLVGPGWGGLYNSKVSLADG---------STVTADDAYLRESILQPNAKiVAGYPt 272
Cdd:COG3474     3 AAAGEKLFN-RKCAACHSvdGGAGNRVGPNLNGVVGRKAGSVEGfaysdalkaSGLVWDEETLDAWLADPKAF-VPGTK- 79
                          90       100
                  ....*....|....*....|....*
gi 2182225615 273 gvMPaYGTLLKDDEVNAIVAYLHSL 297
Cdd:COG3474    80 --MP-FAGLKDPEDRADLIAYLKTL 101
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
207-297 7.74e-09

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 52.16  E-value: 7.74e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 207 GAQLVKDNgCVACHAADDKKLV--GPGWGGLYNSKVSLADGSTVTAddaylRESILQPNAKIVAGYPTGVMPAYGtLLKD 284
Cdd:pfam00034   3 GKKLFAAN-CAACHGVNGEGAGagGPDLAGLAARYPGDALGAIREN-----KHAIGGGGVDRAGGPPGTGMPAFD-GLTD 75
                          90
                  ....*....|...
gi 2182225615 285 DEVNAIVAYLHSL 297
Cdd:pfam00034  76 EEIADLVAYLLSL 88
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
216-297 1.90e-08

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 50.66  E-value: 1.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 216 CVACHAADDKKL----VGPgwgglynskvSLADGSTVTADDAYLRESILqpNAKIVagYPTGVMPAYGT--LLKDDEVNA 289
Cdd:TIGR04485   5 CLACHQIPGSEVfpgnIGP----------SLTGYGARYPDEAYLRAKIA--DAKAV--NPCTVMPRFGKngILTEQEIED 70

                  ....*...
gi 2182225615 290 IVAYLHSL 297
Cdd:TIGR04485  71 VVAYLLTL 78
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
36-153 2.26e-05

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 42.56  E-value: 2.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615  36 AADGKRVFQAyNCMGCHTMVGNGAYL-GPDLT-----EEYKHAGPAWLAAFLPSAGGWpTTAAVRAQLQDPNqsadagtd 109
Cdd:COG3474     3 AAAGEKLFNR-KCAACHSVDGGAGNRvGPNLNgvvgrKAGSVEGFAYSDALKASGLVW-DEETLDAWLADPK-------- 72
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2182225615 110 sidaylKKFPGaaerierrgggtTMMPNLPLTK-DEIGQLIAYLK 153
Cdd:COG3474    73 ------AFVPG------------TKMPFAGLKDpEDRADLIAYLK 99
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
37-156 3.57e-05

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 41.76  E-value: 3.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615  37 ADGKRVFQAyNCMGCHTMVGNGAYL-GPDLTEeykhagpawlaaflpsAGGWPTTAAVRAQLQDPNQSADAGTDsidayl 115
Cdd:pfam00034   1 ARGKKLFAA-NCAACHGVNGEGAGAgGPDLAG----------------LAARYPGDALGAIRENKHAIGGGGVD------ 57
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2182225615 116 kkfpgaaeriERRGGGTTMMPNLP-LTKDEIGQLIAYLKYTS 156
Cdd:pfam00034  58 ----------RAGGPPGTGMPAFDgLTDEEIADLVAYLLSLS 89
CxxCH_TIGR02603 TIGR02603
putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain ...
36-153 9.59e-05

putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).


Pssm-ID: 274224  Cd Length: 133  Bit Score: 41.58  E-value: 9.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615  36 AADGKRVFqAYNCMGCHTMVGNGAYLGPDLTEEYKHAGPAWLAAFL-PSAGGWPTTAAVRAQLQD--------PNQSADA 106
Cdd:TIGR02603   3 AARGKAVF-AKVCYLCHRIGGQGVDFGPNLTTVGTKGKEYLLEAILdPSRTVAPGFETYRVTTKDgrilaglvASETADP 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2182225615 107 GTdsidayLKKFPGAAERIERR------GGGTTMMPN---LPLTKDEIGQLIAYLK 153
Cdd:TIGR02603  82 LT------IKMPGGVEQVVPREeikkrkHLPVSLMPEgleMGLSDQDLADLVAYLK 131
 
Name Accession Description Interval E-value
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
204-297 4.03e-12

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 61.44  E-value: 4.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 204 VAHGAQLVKdNGCVACHA--ADDKKLVGPGWGGLYNSKVSLADG---------STVTADDAYLRESILQPNAKiVAGYPt 272
Cdd:COG3474     3 AAAGEKLFN-RKCAACHSvdGGAGNRVGPNLNGVVGRKAGSVEGfaysdalkaSGLVWDEETLDAWLADPKAF-VPGTK- 79
                          90       100
                  ....*....|....*....|....*
gi 2182225615 273 gvMPaYGTLLKDDEVNAIVAYLHSL 297
Cdd:COG3474    80 --MP-FAGLKDPEDRADLIAYLKTL 101
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
202-299 4.04e-11

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 58.37  E-value: 4.04e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 202 DPVAHGAQLVKDNGCVACHAAdDKKLVGPGWGGLYNSKVSLADgstvtaDDAYLRESILQPNAKIvagYPTGVMPAYGTl 281
Cdd:COG4654     2 ADAAAGKALAKKSGCLACHAV-DKKLVGPSYKDVAKKYKGKAD------AVAKLAKKIKKGGSGV---WGDVPMPPHPQ- 70
                          90
                  ....*....|....*...
gi 2182225615 282 LKDDEVNAIVAYLHSLEK 299
Cdd:COG4654    71 LSDAEAKALVKWILSLKK 88
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
202-297 5.46e-11

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 60.35  E-value: 5.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 202 DPVAHGAQLVKDNgCVACHAADDKKLVGPGWgglynskvSLADGSTVTADDAYLRESILQpnakivaGYPTGVMPAYGTL 281
Cdd:COG2010    87 EALARGKALYEQN-CAACHGADGKGGLGAAP--------NLTDDALYGGDPEALVETILN-------GRPGGAMPAFGGQ 150
                          90
                  ....*....|....*.
gi 2182225615 282 LKDDEVNAIVAYLHSL 297
Cdd:COG2010   151 LSDEEIAALAAYLRSL 166
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
207-297 7.74e-09

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 52.16  E-value: 7.74e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 207 GAQLVKDNgCVACHAADDKKLV--GPGWGGLYNSKVSLADGSTVTAddaylRESILQPNAKIVAGYPTGVMPAYGtLLKD 284
Cdd:pfam00034   3 GKKLFAAN-CAACHGVNGEGAGagGPDLAGLAARYPGDALGAIREN-----KHAIGGGGVDRAGGPPGTGMPAFD-GLTD 75
                          90
                  ....*....|...
gi 2182225615 285 DEVNAIVAYLHSL 297
Cdd:pfam00034  76 EEIADLVAYLLSL 88
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
216-297 1.90e-08

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 50.66  E-value: 1.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 216 CVACHAADDKKL----VGPgwgglynskvSLADGSTVTADDAYLRESILqpNAKIVagYPTGVMPAYGT--LLKDDEVNA 289
Cdd:TIGR04485   5 CLACHQIPGSEVfpgnIGP----------SLTGYGARYPDEAYLRAKIA--DAKAV--NPCTVMPRFGKngILTEQEIED 70

                  ....*...
gi 2182225615 290 IVAYLHSL 297
Cdd:TIGR04485  71 VVAYLLTL 78
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
204-297 2.13e-06

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 48.35  E-value: 2.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 204 VAHGAQLVKDNgCVACHAADDKKLVGPGwgglynsKVSLADGSTVTADDAylrESILQpnakIVAGYPTGVMPAYGTLLK 283
Cdd:TIGR00782 203 AAKGQELFADN-CTTCHGEDGKGLQELG-------APNLTDDVWLYGGDL---KTITT----TITNGRGGVMPAWGPRLS 267
                          90
                  ....*....|....
gi 2182225615 284 DDEVNAIVAYLHSL 297
Cdd:TIGR00782 268 EAQIKALAAYVHSL 281
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
202-294 1.33e-05

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 42.39  E-value: 1.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 202 DPVAHGAQLVKDNgCVACHAADDkklVGPgwgglynskvSLADgstVTADDAYLRESILQPNakivagyptGVMPAYGTL 281
Cdd:pfam13442   1 AAAAAGEALYAAN-CASCHGTGG---AGP----------SLAG---RALPPEALVDIIRNGK---------GAMPAFGGD 54
                          90
                  ....*....|...
gi 2182225615 282 LKDDEVNAIVAYL 294
Cdd:pfam13442  55 LSDEELEALAAYL 67
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
36-153 2.26e-05

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 42.56  E-value: 2.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615  36 AADGKRVFQAyNCMGCHTMVGNGAYL-GPDLT-----EEYKHAGPAWLAAFLPSAGGWpTTAAVRAQLQDPNqsadagtd 109
Cdd:COG3474     3 AAAGEKLFNR-KCAACHSVDGGAGNRvGPNLNgvvgrKAGSVEGFAYSDALKASGLVW-DEETLDAWLADPK-------- 72
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2182225615 110 sidaylKKFPGaaerierrgggtTMMPNLPLTK-DEIGQLIAYLK 153
Cdd:COG3474    73 ------AFVPG------------TKMPFAGLKDpEDRADLIAYLK 99
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
37-156 3.57e-05

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 41.76  E-value: 3.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615  37 ADGKRVFQAyNCMGCHTMVGNGAYL-GPDLTEeykhagpawlaaflpsAGGWPTTAAVRAQLQDPNQSADAGTDsidayl 115
Cdd:pfam00034   1 ARGKKLFAA-NCAACHGVNGEGAGAgGPDLAG----------------LAARYPGDALGAIRENKHAIGGGGVD------ 57
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2182225615 116 kkfpgaaeriERRGGGTTMMPNLP-LTKDEIGQLIAYLKYTS 156
Cdd:pfam00034  58 ----------RAGGPPGTGMPAFDgLTDEEIADLVAYLLSLS 89
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
204-300 4.06e-05

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 41.64  E-value: 4.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 204 VAHGAQLVKdnGCVACHAADDKKLVGPGW---GGLYnskvsladgstvtadDAYLRESILQPNAKIvagYPTGVMPAYGT 280
Cdd:COG2863    15 AARGKAYAA--ACAACHGADGEGNPGGGAprlAGQH---------------AEYLVAQLKAFRSGA---RKNGVMPAIAK 74
                          90       100
                  ....*....|....*....|
gi 2182225615 281 LLKDDEVNAIVAYLHSLEKQ 300
Cdd:COG2863    75 GLSDEDIKALAAYIASLKAP 94
NorB COG3256
Nitric oxide reductase large subunit [Inorganic ion transport and metabolism];
2-156 7.88e-05

Nitric oxide reductase large subunit [Inorganic ion transport and metabolism];


Pssm-ID: 442487  Cd Length: 738  Bit Score: 44.11  E-value: 7.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615   2 LAILALIFIVLSIFSFLKSRGQ-------VTPD-TVSFGPYQAADGKRVFQAYNCMGCHTMVGNGAYLGPDLTEEYKH-A 72
Cdd:COG3256    10 ALVLVVSFAVLGYGGVEIYRQAppipdkvVSPDgEVLFTKDDILDGQQVFQSYGLMQYGSIWGHGAYLGPDWTADWLHrE 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615  73 GPAWLAAFLPSAGGWP-------TTAAVRAQLQDP--NQSADAGTDSI---DAYLKKFPGAAERIERRGGGTT----MMP 136
Cdd:COG3256    90 AEAMLDYYAQQRYGKPyaalsaeEQAALRARVKRElrTNRYDAATGTLtlsPARAAAIEQVAAYYTDLFGDGPeeyaLPE 169
                         170       180
                  ....*....|....*....|
gi 2182225615 137 NLPLTKDEIGQLIAYLKYTS 156
Cdd:COG3256   170 GTIPDPEEARQLAAFFFWTA 189
CxxCH_TIGR02603 TIGR02603
putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain ...
36-153 9.59e-05

putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).


Pssm-ID: 274224  Cd Length: 133  Bit Score: 41.58  E-value: 9.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615  36 AADGKRVFqAYNCMGCHTMVGNGAYLGPDLTEEYKHAGPAWLAAFL-PSAGGWPTTAAVRAQLQD--------PNQSADA 106
Cdd:TIGR02603   3 AARGKAVF-AKVCYLCHRIGGQGVDFGPNLTTVGTKGKEYLLEAILdPSRTVAPGFETYRVTTKDgrilaglvASETADP 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2182225615 107 GTdsidayLKKFPGAAERIERR------GGGTTMMPN---LPLTKDEIGQLIAYLK 153
Cdd:TIGR02603  82 LT------IKMPGGVEQVVPREeikkrkHLPVSLMPEgleMGLSDQDLADLVAYLK 131
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
36-87 2.27e-04

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 39.50  E-value: 2.27e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2182225615  36 AADGKRVFQAYNCMGCHTMvgNGAYLGPDLTE---EYKH--AGPAWLAAFL--PSAGGW 87
Cdd:COG4654     4 AAAGKALAKKSGCLACHAV--DKKLVGPSYKDvakKYKGkaDAVAKLAKKIkkGGSGVW 60
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
104-300 1.24e-03

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 39.45  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 104 ADAGTDSIDAY---------LKKFPGAAERI----ERRGGGTTmmpnLPLTKDEIGQLIAYLKYTSamntEGWPPKVEVD 170
Cdd:COG3258    30 LDAGTKPWGVAaaypayrarNGKVVTLEDRIngcfTRSMNGKP----LPLDSAEMKALVAYLRWLS----RGLPVGVKLD 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615 171 GfdrrvqlahgvvataqaAPAPTTAAPVPAADPvAHGAQLVKDNgCVACHAADdkklvGPGwgglynskVSLADGSTV-- 248
Cdd:COG3258   102 G-----------------RGLPKLPKPAASADV-ERGKALYAER-CASCHGAD-----GEG--------QGRADGQYGfp 149
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2182225615 249 --TADDAYLRESILQPNAKIVAGYPTGVMPAY-GTLLKDDEVNAIVAYLHSLEKQ 300
Cdd:COG3258   150 plWGGDSYNDGAGMARLGTLADFIKGRNMPLGkPGSLSDDEAWDVAAYVRSLPRP 204
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
33-120 6.58e-03

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 36.85  E-value: 6.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2182225615  33 PYQAADGKRVFQAyNCMGCHTMVGNGAY-LGPDLTEEYKHAG-PAWLAAFLpsAGGWPTTA--AVRAQLqdpnqsADAGT 108
Cdd:COG2010    86 AEALARGKALYEQ-NCAACHGADGKGGLgAAPNLTDDALYGGdPEALVETI--LNGRPGGAmpAFGGQL------SDEEI 156
                          90
                  ....*....|..
gi 2182225615 109 DSIDAYLKKFPG 120
Cdd:COG2010   157 AALAAYLRSLSG 168
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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