hypothetical protein [Legionella bozemanae]
Protein Classification
HNH endonuclease family protein( domain architecture ID 1640)
HNH endonuclease family protein, similar to Physarum polycephalum intron-encoded endonuclease I-Ppoi which mediates the mobility of intron 3 in the ribosomal DNA
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| HNHc super family | cl00083 | HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic ... |
1-48 | 2.30e-10 | ||
HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins. The actual alignment was detected with superfamily member PRK15137: Pssm-ID: 469607 Cd Length: 235 Bit Score: 53.33 E-value: 2.30e-10
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| Name | Accession | Description | Interval | E-value | ||
| PRK15137 | PRK15137 | DNA-specific endonuclease I; Provisional |
1-48 | 2.30e-10 | ||
DNA-specific endonuclease I; Provisional Pssm-ID: 185091 Cd Length: 235 Bit Score: 53.33 E-value: 2.30e-10
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| Endonuclease_1 | pfam04231 | Endonuclease I; Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli ... |
1-48 | 2.29e-05 | ||
Endonuclease I; Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown. Other family members are known to be extracellular. This family also includes a non-specific, Mg2+ activated ribonuclease precursor. Pssm-ID: 398077 [Multi-domain] Cd Length: 235 Bit Score: 39.41 E-value: 2.29e-05
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| Name | Accession | Description | Interval | E-value | ||
| PRK15137 | PRK15137 | DNA-specific endonuclease I; Provisional |
1-48 | 2.30e-10 | ||
DNA-specific endonuclease I; Provisional Pssm-ID: 185091 Cd Length: 235 Bit Score: 53.33 E-value: 2.30e-10
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| Endonuclease_1 | pfam04231 | Endonuclease I; Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli ... |
1-48 | 2.29e-05 | ||
Endonuclease I; Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown. Other family members are known to be extracellular. This family also includes a non-specific, Mg2+ activated ribonuclease precursor. Pssm-ID: 398077 [Multi-domain] Cd Length: 235 Bit Score: 39.41 E-value: 2.29e-05
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| Blast search parameters | ||||
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